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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013830 ID=TCONS_00013830|Name=TCONS_00013830|organism=Clytia hemisphaerica|type=transcript|length=1028bpRun BLAST on NCBI protein sequence of TCONS_00013830-protein >TCONS_00013830-protein ID=TCONS_00013830-protein|Name=TCONS_00013830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp MDETDSGHRLPRNVIPSHYDIQIQPDLENFTFTGQVSIKVHVKQPTRTVTRun BLAST on NCBI transcript from alignment at sc0000174:127548..132713+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013830 ID=TCONS_00013830|Name=TCONS_00013830|organism=Clytia hemisphaerica|type=transcript|length=5166bp|location=Sequence derived from alignment at sc0000174:127548..132713+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000174:127548..132713+ >TCONS_00013830 ID=TCONS_00013830|Name=TCONS_00013830|organism=Clytia hemisphaerica|type=CDS|length=8586bp|location=Sequence derived from alignment at sc0000174:127548..132713+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013830 vs. Swiss-Prot (Human)
Match: PSA (Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2) HSP 1 Score: 333.183 bits (853), Expect = 1.756e-105 Identity = 160/319 (50.16%), Postives = 216/319 (67.71%), Query Frame = 1
Query: 73 MDETDSGHRLPRNVIPSHYDIQIQPDLENFTFTGQVSIKVHVKQPTRTVTFNYRDIEIEEVTFNTAEGLSITPGSMDYHPQKDRIVLNFDGELLQCDGQLVIKYKGHLRDDLKGFYRSLQTSDSGEKKYAAVTHFEPTGARRAFPCWDEPALKCTFDITLIVPEGKTALSNMNVIETKPMENNAVLKMVKFATTPKMSTYIIAFIVGDFDYIEGKANNDVRVRVYTSVGKSEGGRFALEFAKKALVFLENYFQVPYGLPKIDLIGIADFGIGAMENWGLVTYRERYIMVD-ENTSASTKQFITEIVAHEFTHNWFGNLV 1026
M E RLP +V P +Y + ++PDL +FTF G++ V+Q T + N DI+I ++ I +Y + +++ L+F L G L I + G L D +KGFYRS T+ SGE +YAAVT FE T ARRAFPCWDEPA+K TFDI+L+VP+ + ALSNMNVI+ KP ++ L VKFA TP MSTY++AF+VG++D++E ++ + V VRVYT VGK+E G+FALE A K L F ++YF VPY LPKIDLI IADF GAMENWGLVTYRE +++D +N+ +S++Q++ +V HE H WFGNLV
Sbjct: 45 MPEKRPFERLPADVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEEIHATGFNYQNEDEKVTLSFPSTLQTGTGTLKIDFVGELNDKMKGFYRSKYTTPSGEVRYAAVTQFEATDARRAFPCWDEPAIKATFDISLVVPKDRVALSNMNVIDRKPYPDDENLVEVKFARTPVMSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFYKDYFNVPYPLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGHELAHQWFGNLV 363 The following BLAST results are available for this feature:
BLAST of TCONS_00013830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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