TCONS_00013806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013806
Unique NameTCONS_00013806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013806 ID=TCONS_00013806|Name=TCONS_00013806|organism=Clytia hemisphaerica|type=transcript|length=333bp
GGCAGATATTTAAGTTTATCAAAGAGCTGAGACTAAAACTAGCATATCTG
TTGCAAAGATTTTTAGAGCCCTATTGCATTAATATCTGGCAGCAGTACAT
AGCGGAGAAATATCTGCATGTTATTGGTGAATAAATATTTATGGGTACTT
TTACAAGAACAATGAACCAAGTTCACAGAAAAAAAACACGATGTCTGTAA
AAGACAAACCAACGAAAATTATTTGCTTTGTActtaattagcctccgtct
cagaacgcggtcagaaaattttgcggataatttcacagcgaaaatgcatc
cagtgaaatgtgagtaatgtatcatgattcaag
Run BLAST on NCBI

transcript from alignment at sc0000173:172412..172744

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013806 ID=TCONS_00013806|Name=TCONS_00013806|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0000173:172412..172744 (Clytia hemisphaerica)
cttgaatcatgatacattactcacatttcactggatgcattttcgctgtg
aaattatccgcaaaattttctgaccgcgttctgagacggaggctaattaa
gTACAAAGCAAATAATTTTCGTTGGTTTGTCTTTTACAGACATCGTGTTT
TTTTTCTGTGAACTTGGTTCATTGTTCTTGTAAAAGTACCCATAAATATT
TATTCACCAATAACATGCAGATATTTCTCCGCTATGTACTGCTGCCAGAT
ATTAATGCAATAGGGCTCTAAAAATCTTTGCAACAGATATGCTAGTTTTA
GTCTCAGCTCTTTGATAAACTTAAATATCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007710XLOC_007710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013806-exon-sc0000173-1491911889:172412..172744TCONS_00013806-exon-sc0000173-1491911889:172412..172744Clytia hemisphaericaexon
TCONS_00013806-exon-sc0000173-1510915933:172412..172744TCONS_00013806-exon-sc0000173-1510915933:172412..172744Clytia hemisphaericaexon
TCONS_00013806-exon-sc0000173-1575043694:172412..172744TCONS_00013806-exon-sc0000173-1575043694:172412..172744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000173supercontigsc0000173:172412..172744 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00823	0	4.03634	2.79614	6.18447	3.01954	0.843618	1.68338	2.56637	1.92518	0	2.27983	3.02598	1.64152	6.15619	3.73849	8.19389	5.51234	2.1448	3.45171	16.6832	16.7786	2.98305	4.49968	2.2952	0	0.190444	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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