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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013740 ID=TCONS_00013740|Name=TCONS_00013740|organism=Clytia hemisphaerica|type=transcript|length=1022bp
GCCATTtctgtctcagctgcaaattattttgagatacactttaatacacg
ggtttcgaattagcACTGTTATGATTCTGtgtaatttgcacgaaaaaaaa
agtaaataaacttCTGATTagatatgataaaaaattataaatatctTACA
ATACAGCACTGGGTTGGGTAGATCAAATTATCATATTAAAGCTACTGGAT
AATGTCACTGTTGTTACTTACACCATTGAAAAGTCCTGAAGCGGCATTTC
TTACAATTTCAGCTAAAAATCAGCTTTATCCCCGTTCTCTAAATGTTTTG
CATTGAAGACTCGAAacatattttcttttgattctcCAACATAAGTCTAT
ACTTCCTGTGTTTAACCCATTTCTCCACCATCTCCATTTTCAGATCTTTC
ATTTCCAAATCATCCATTTCCTTTCTAGCAGAAACGTTCTTTGAAAGACT
TGCGTACTCGTCAAAAAGAAGTTTGCAAATGTATTTTTCATCTATATCAA
CCAGGCTCGTACCCATCTCACGAATTAACACAAAAAGAATGGTTTCCAAT
AGAATCGATTGGAATTCAAGAATTGAATCAGGAATCAAACTTTCTGAATG
AATAGCAGCACTGTATGATGTAAGAGGTGTTTTTTGGTTGAGACTATTTG
GAATCCTTTTTCTTCGCTTGCTGATGGTAGATTTCGGTCGATCATTTTGG
CACCCTTTGCAAAAGCAAGATGTACCGCATTTAGTTCCTCTCTTTACACA
GGAGCATTTCTTCAGCTTACTAGTATCAATTTCCAAGCAATGACTAGAAC
CTTCCTGTTTACTGTTTCTGCCACACCTACAACTTGTAGGCTCATTTGAG
TTGCTTACCAAACAAGTAAATTCTTTTTCCTTCGGACCACACCATACATA
GCACACATGTGGTATTGCTACACCTTGCCTCGGGGTAATGGGTAAGAACG
GCATTCCAAAACATGCTGGTATCAACACGATCATGATGCCTAAAGAATTG
GCCAATGCTTCTGGAATATTGC Run BLAST on NCBI protein sequence of TCONS_00013740-protein >TCONS_00013740-protein ID=TCONS_00013740-protein|Name=TCONS_00013740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
NIPEALANSLGIMIVLIPACFGMPFLPITPRQGVAIPHVCYVWCGPKEKE
FTCLVSNSNEPTSCRCGRNSKQEGSSHCLEIDTSKLKKCSCVKRGTKCGT
SCFCKGCQNDRPKSTISKRRKRIPNSLNQKTPLTSYSAAIHSESLIPDSI
LEFQSILLETILFVLIREMGTSLVDIDEKYICKLLFDEYASLSKNVSARK
EMDDLEMKDLKMEMVEKWVKHRKYRLMLENQKKICFESSMQNI Run BLAST on NCBI transcript from alignment at sc0000171:30528..31549 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013740 ID=TCONS_00013740|Name=TCONS_00013740|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at sc0000171:30528..31549 (Clytia hemisphaerica)
GCAATATTCCAGAAGCATTGGCCAATTCTTTAGGCATCATGATCGTGTTG
ATACCAGCATGTTTTGGAATGCCGTTCTTACCCATTACCCCGAGGCAAGG
TGTAGCAATACCACATGTGTGCTATGTATGGTGTGGTCCGAAGGAAAAAG
AATTTACTTGTTTGGTAAGCAACTCAAATGAGCCTACAAGTTGTAGGTGT
GGCAGAAACAGTAAACAGGAAGGTTCTAGTCATTGCTTGGAAATTGATAC
TAGTAAGCTGAAGAAATGCTCCTGTGTAAAGAGAGGAACTAAATGCGGTA
CATCTTGCTTTTGCAAAGGGTGCCAAAATGATCGACCGAAATCTACCATC
AGCAAGCGAAGAAAAAGGATTCCAAATAGTCTCAACCAAAAAACACCTCT
TACATCATACAGTGCTGCTATTCATTCAGAAAGTTTGATTCCTGATTCAA
TTCTTGAATTCCAATCGATTCTATTGGAAACCATTCTTTTTGTGTTAATT
CGTGAGATGGGTACGAGCCTGGTTGATATAGATGAAAAATACATTTGCAA
ACTTCTTTTTGACGAGTACGCAAGTCTTTCAAAGAACGTTTCTGCTAGAA
AGGAAATGGATGATTTGGAAATGAAAGATCTGAAAATGGAGATGGTGGAG
AAATGGGTTAAACACAGGAAGTATAGACTTATGTTGgagaatcaaaagaa
aatatgtTTCGAGTCTTCAATGCAAAACATTTAGAGAACGGGGATAAAGC
TGATTTTTAGCTGAAATTGTAAGAAATGCCGCTTCAGGACTTTTCAATGG
TGTAAGTAACAACAGTGACATTATCCAGTAGCTTTAATATGATAATTTGA
TCTACCCAACCCAGTGCTGTATTGTAagatatttataattttttatcata
tctAATCAGaagtttatttactttttttttcgtgcaaattacaCAGAATC
ATAACAGTgctaattcgaaacccgtgtattaaagtgtatctcaaaataat
ttgcagctgagacagaAATGGC Coding sequence (CDS) from alignment at sc0000171:30528..31549 >TCONS_00013740 ID=TCONS_00013740|Name=TCONS_00013740|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000171:30528..31549 (Clytia hemisphaerica)
AATATTCCAGAAGCATTGGCCAATTCTTTAGGCATCATGATCGTGTTGAT
ACCAGCATGTTTTGGAATGCCGTTCTTACCCATTACCCCGAGGCAAGGTG
TAGCAATACCACATGTGTGCTATGTATGGTGTGGTCCGAAGGAAAAAGAA
TTTACTTGTTTGGTAAGCAACTCAAATGAGCCTACAAGTTGTAGGTGTGG
CAGAAACAGTAAACAGGAAGGTTCTAGTCATTGCTTGGAAATTGATACTA
GTAAGCTGAAGAAATGCTCCTGTGTAAAGAGAGGAACTAAATGCGGTACA
TCTTGCTTTTGCAAAGGGTGCCAAAATGATCGACCGAAATCTACCATCAG
CAAGCGAAGAAAAAGGATTCCAAATAGTCTCAACCAAAAAACACCTCTTA
CATCATACAGTGCTGCTATTCATTCAGAAAGTTTGATTCCTGATTCAATT
CTTGAATTCCAATCGATTCTATTGGAAACCATTCTTTTTGTGTTAATTCG
TGAGATGGGTACGAGCCTGGTTGATATAGATGAAAAATACATTTGCAAAC
TTCTTTTTGACGAGTACGCAAGTCTTTCAAAGAACGTTTCTGCTAGAAAG
GAAATGGATGATTTGGAAATGAAAGATCTGAAAATGGAGATGGTGGAGAA
ATGGGTTAAACACAGGAAGTATAGACTTATGTTGgagaatcaaaagaaaa
tatgtTTCGAGTCTTCAATGCAAAACATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013740-exon-sc0000171-1491911889:30528..31549 | TCONS_00013740-exon-sc0000171-1491911889:30528..31549 | Clytia hemisphaerica | exon |
| TCONS_00013740-exon-sc0000171-1510915933:30528..31549 | TCONS_00013740-exon-sc0000171-1510915933:30528..31549 | Clytia hemisphaerica | exon |
| TCONS_00013740-exon-sc0000171-1575043694:30528..31549 | TCONS_00013740-exon-sc0000171-1575043694:30528..31549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000171 | supercontig | sc0000171:30528..31549 . |
Blast
The following BLAST results are available for this feature:
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