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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013721 ID=TCONS_00013721|Name=TCONS_00013721|organism=Clytia hemisphaerica|type=transcript|length=2503bpRun BLAST on NCBI protein sequence of TCONS_00013721-protein >TCONS_00013721-protein ID=TCONS_00013721-protein|Name=TCONS_00013721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp MSSCSRLSKLSRSAVLQARSCINVQVKETGLKTITSANKIAFSPLSRPQNRun BLAST on NCBI transcript from alignment at sc0000171:269286..291446- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013721 ID=TCONS_00013721|Name=TCONS_00013721|organism=Clytia hemisphaerica|type=transcript|length=22161bp|location=Sequence derived from alignment at sc0000171:269286..291446- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:269286..291446- >TCONS_00013721 ID=TCONS_00013721|Name=TCONS_00013721|organism=Clytia hemisphaerica|type=CDS|length=17556bp|location=Sequence derived from alignment at sc0000171:269286..291446- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013721 vs. Swiss-Prot (Human)
Match: ODP2 (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3) HSP 1 Score: 459.529 bits (1181), Expect = 3.610e-150 Identity = 254/447 (56.82%), Postives = 314/447 (70.25%), Query Frame = 3
Query: 336 SSYPTHEMVKLPNLSPTMEAGTIVAWXXXXXXXXXXXXVLAIIETDKSTMEMETPEEGYVAKIFLPAGSKDVPVNQPIAIIVSEEEDIAAFANYNPDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFASPLAKRVALERGVDINQVNGTGPRGRITVEDVEAHKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFTDLQLSNMRKIIAKRLTESKQTVPHYYLSVDVNMDKVLELRKQLNSESNGEYKLSVNDFILKASALALKKVPECNSQWMTDFIREFHTVDISVAVSTEGGLITPIVFDADKKGLQNINNDVVSLAGKARENKLQPHEFQGGTFTISNLGMFGVTNFSAVINPPQSCILAVGGTEDRIIPANNEAGFAAAKVMSVTLSCDHRVVDGAVGAQWLKVFRSFLENPITMLL 1676
SSYP H V LP LSPTM GT+ WEK+ GE++ EG++LA IETDK+T+ E EEGY+AKI +P G++DVP+ P+ IIV +E DI+AFA+Y P E P PV + PP P +A P P RVF SPLAK++A+E+G+D+ QV GTGP GRIT +D+++ A V+ P P T FTD+ +SN+R++IA+RL +SKQT+PHYYLS+DVNM +VL +RK+LN G K+SVNDFI+KASALA KVPE NS WM IR+ H VD+SVAVST GLITPIVF+A KG++ I NDVVSLA KARE KLQPHEFQGGTFTISNLGMFG+ NFSA+INPPQ+CILA+G +ED+++PA+NE GF A +MSVTLSCDHRVVDGAVGAQWL FR +LE PITMLL
Sbjct: 213 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGPKG-----RVFVSPLAKKLAVEKGIDLTQVKGTGPDGRITKKDIDSF-------VPSKVAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 647 HSP 2 Score: 91.6633 bits (226), Expect = 5.035e-19 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query: 327 RMYSSYPTHEMVKLPNLSPTMEAGTIVAWXXXXXXXXXXXXVLAIIETDKSTMEMETPEEGYVAKIFLPAGSKDVPVNQPIAIIVSEEEDIAAFANYNPD 626
R Y S P H+ V LP+LSPTM+AGTI WEK+EG++I EG+++A +ETDK+T+ E+ EE Y+AKI + G++DVP+ I I V + EDI AF NY D
Sbjct: 83 RRYYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLD 182 The following BLAST results are available for this feature:
BLAST of TCONS_00013721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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