TCONS_00013718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013718
Unique NameTCONS_00013718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013718 ID=TCONS_00013718|Name=TCONS_00013718|organism=Clytia hemisphaerica|type=transcript|length=1418bp
CGACAGCAACTTTTATGATTTGAACTTTGCCGCTTAACTAGACAACAACG
TATTTGAGGCTCTCTTCCAGCTAGTTTTTGTATATTGTTCATTCTTTGGA
AAAATGTAACTTTACTGTACAGACTTTAAATGGCTAATTCTCCTGTATAT
AGGGTGGTGGTTTTTTAAACTGTATATTTTTGCAAGATAGAAGTTTGTGT
GTTTGTTATGAAATCTTGGTCTGATGATGGTTTATTTTCATCCTTTTTAG
ATATATTTTTATAACATCATATGAATTTAAATGAACTTATAATAACACAT
AAACATCAAACATCATGCCACAATTACCAACTTCTACAGCAGAGGAATAT
GGAGCCGAGGATGAAATTAAACAATACACACAGGAGGAAGGGGAAGAATC
TGACAGTTCCACAGTCGATGTAGTCAATGATATTAAAGACGATTTGCTAA
ATGAAGATGGGCGAGAATCGGTGAAGGGAGATGAGCCTTTGTTTCGAACC
ACATCAAACAGATATAACAAAGATAGTCCAGGATTATATGGAAGGCCAGC
ACCTGTGATAGTGGGACCACATCATAATTACTATGATCAATCAAATGGAT
ATCGAAGCTCAAGTAATCAACAACAACATGGAAATTCATACCAGTCAACA
ACCCAAATCAGAATGCCAATGTACCAAAGAGGGAGTGGTGATGAAAGATA
TAGTTATGAGCATGGCTCATGGCCATCGCAAGTGCCTGTCCATGGTTATG
CTGTAGGATATGGTGCTGGCGGCGTACCGAAAAATTATAATTATCGTTAT
CCACCACATCCTGGAGTTGCATACTACGCACCAggACATGGATACCCAGG
GATGACAGGAAGACCAGTAAAAGAACCGAAACGACCACACGTCAAAAAAC
CACTAAACGCTTTCATGTTATTCATGAAAGAGCAACGACCAAAAATTGCA
GCTGAATATACATTGAAAGAAAGTGCAGCTATCAATCAAATATTAGGGAA
AAGGTGGCATGCATTGGATAAGTCAGaacaagcaaaatattatgaattaG
CAAGAAAAGAACGAGCAATACATATGCAATTATATCCTGGTTGGAGTGCC
CGTGATAACTACGCTCAACTTGGAAGGAAAAAGAAACGACCAAGAGATAA
AAACGAagAAATGAACCCAAAGAAATGTCGTGCACGTTATGGTTTAGATC
GTCAAGAACAATGGTGTAAACCGTGCAGGAGGAAGAAGAAGTGTATTCGA
TTCATTGTTGGTGCTGATGGTGAAACTACTGAAGTACCTGATAAAGAACA
ACAAACCGAAATAAATTCCGATTCAGATAATGAAAATACCAATGCAGAAA
ATCGTGCTTCTGCTCCTACTAACAATAATACTACAGactctttgaaagaa
aatttatcgGAGCGTGTA
Run BLAST on NCBI

transcript from alignment at sc0000171:248912..255381-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013718 ID=TCONS_00013718|Name=TCONS_00013718|organism=Clytia hemisphaerica|type=transcript|length=6470bp|location=Sequence derived from alignment at sc0000171:248912..255381- (Clytia hemisphaerica)
CGACAGCAACTTTTATGATTTGAACTTTGCCGCTTAACTAGACAACAACG TATTTGAGGCTCTCTTCCAGCTAGTTTTTGTATATTGTTCATTCTTTGGA AAAATGTAACTTTACTGTACAGACTTTAAATGGCTAATTCTCCTGTATAT AGGGTGGTGGTTTTTTAAACTGTATATTTTTGCAAGATAGAAGTTTGTGT GTTTGTTATGAAATCTTGGTCTGATGATGGTTTATTTTCATCCTTTTTAG ATATATTTTTATAACATCATATGAATTTAAATGAACTTATAATAACACAT AAACATCAAACATCATGCCACAATTACCAACTTCTACAGCAGAGGAATAT GGAGCCGAGGATGAAATTAAACAATACACACAGGAGGAAGGGGAAGAATC TGACAGTTCCACAGTCGATGTAGTCAATGATATTAAAGACGATTTGCTAA ATGAAGATGGGCGAGAATCGGTATATTAGTTTTTTGTCTCATTTTCTTGA TACGGTTGGCGTTGACTGGTTTTGAATTAAAATTTGTATCATAGATGATG CAAGTTATATATAGACCTTTTGCTAGGTCCGATCAATGCAATGTTGGTAT GTTGGATTATAAACTCCAGCATAAATCACGATAATTTCAGGTTTGAATGG ATAAAAGGAAAACGTTGGTTATTTTTGTTGTTTCCCTCACATTTAATCTA TTGATTGAAACATAGAAGTATCACGATTTAATGCTGAAGTTTTTAACTAT CCAACATGACATCGCGCCTAGGAAAAGGTCTATGCTACCGCCAAAACAAG ACCTGGAATTCCAGGGAATCCTTTATTCCCTCAATTTTGAGGGGTACACT TATTCTATTCATCAAACTAAACACTTACCGTAAGTTGGTCTAATGTCGAC ATCCGTCTTCTAATTTTGACATCCTTCTTTATAGATAGGAATAATTAGAA GGTCGAAATCACTGATAGTCTAAAGATTTTTCCTATCATCGTGCTAATCA AAGTCAATCAGCGATTCCGACCTTACTCAGTTTCTATTGTTCCTATCTCT AAAGAAGGGTGTCGAAATTAGAAGACGGATGTCGACATTAGACCAACTTA CGGTATTTATGACTATGTCATTTCTATTCGAACTACACTTTCCAGAAACA GAAAAAAAAAACAGGAATTGTTAAAAATAAAATCAGCTCTCAAACTTAAT TGCTTGGATAGATAGAATTTTATAGATAGACAAAACCTTCTTTTTGCCAG TACTACCTTTAACCTTAGAAAAAAGCAGCAAAAATATATTGGAAAAGTGG AATCTTAGTTTTAGAGCCGGTACCGTGAAGTCAGGTAACTTGCATCAGTG GAGGGAAACTTGCATACCCCTCAAATGACTGACCAAACAAAGCAGCAAAA TTTCAAAACAAATGAACTGCGTAGCTCCGCTGCTGTCGCAGCTCTACTAT ACCCTTTTTGTTTTGATTTAACTTTGCATTTTTATAATGACCAGACACGC CATTCATTTGAGGAGCATGCAAGTTTCCCTCCACTGATGCAAGTTACCCG ACTTCACGGTATCTTAGATATGAAGAAATAGTACACATAACTTTTAATGA AAAAGGTGGAAATGGGGTTTAAAGAGGTGATTGGAAAATAGATATATAAT GAACTTGCAGTACAAGTATGGAGGTTTTATGAATGAATAAAACCAAAAAC CAGAATGATTTACCAAATTTCCCGAATTGAAACTATTATTCACACAAAAT CAAAATCTTACGATACTGTAAATGAATCCATTACCTTGAAAACTGTAATA TGGCAAAACATATCATACACAATATTTAAATTTAACAGTTACTCTCTGGT ACCTCTCTGGGGGGGGGGGCTGGAATAAAAATATCCTGGTCAGAAATTTT TTGAAAAGGAGGCTAATACAGCAGAATTAGGGCTAAAGAGGGAACTTTAA TAAACATTTTCCCAAAAATTAATAAGCCGGGTGTTGGAATAAGAATGTCC TGGGTGAAAAATTTTCAAAATTAATTAGCGGGGAGACACTAGTAGTCATT TATTTTATAAATGACATTCAGTCTAGGCCTAAAATCTACAGCAATGTTTA AAAATTTACCTTTACTACACCCTTTTTCTATAAGAGCAATTTTATAAGAA CAGTGAGGCTCAAAATCGCTTAAAAATATGAACAATCTAAGAACATCGAG TCTGCACTACTTAATTTCAGGAAATTTATGGGTCAAATAAAAAAAATTGG GTGTAAATCCCAATATTCCGCAATTTCACCCTATCCCTGTAAATAAGAGC AGGATGAAGACAATTTTGAAGCTCAAAGTGCCAAAAAATGAAAAAGCTGA GGCTCCTCAGAAATTCACTTGTTTCAAAGTTTCCTGTTCACAGCAGGATA AAAAATAAATGACTAGGAATTTAGGCTCAGGTTCATATTTTACTCTTTTC ACCATTTTTTAACAAGGCTTTGAGATGAAATTTAATAATAAGTGGTTTTA TTCCAAGATAATCCCTGGTTTTGTGTATTACTTCATTCAAATTAAAAGAA GATCAAAGACAACCGACAGTCAAGAGTTATTAATAGCTGTTGTTCTAATT ATTTCCTTTTCTTTTATTAACTGTCACTAATTAGGTTATCATCATATAAA GACTTTTTTAGCATTGGAGATGGCTACTAACCTTAAGTTGAACCTTAATA TTTTAAAGATGATTTTTGTCCCTTGGGAATTATTACATATTTAACACATT TTCCAATGTGTAAACATTTAAATTCTTTTGTATTTTACAGGTGAAGGGAG ATGAGCCTTTGTTTCGAACCACATCAAACAGATATAACAAAGATAGTCCA GGTCAGTCTCAATCATTTATTAATGATATTATGTATCTTTCTATATGTGT CCTAAATTCGGCTTTTTTCTTCTCTATGTTGAATATGTATTTAAATTTTG CAGACTCATTCACATATTTTAGTTCAATGCTTGTGGTTTTCTCACTAAAG ATTTCCTTATTTTCTTTCAATCAGTGATTGCATTATTTTCCTTCTTTGAA TGCTGTTTAGTTTCTATTTATATTTCCCTGCCAGTTTTTGAAGATGAATA AATTGTGCAATGTACTCATTTGGGCTGCATAAAATTTTTCTTTTTTCCTC TCTCCCTTGGTAAACATTTGCCAAATTGTTTTTAAGAAATATTTCAATGC TTACTATATCCCAATTTTTAGGACAAATGGGAATGTTTTCCATTTCATGA TTAAATATTTTCTAGGATAAATAGAATAAAAACACAAACATGGTCTATGT TTTTTCTTTTGATGCAAATATTTTTAGAGTCTATACAGCCTCTGTTTATT GCCTGGTTTTTCTTTAAAATTTAAAAACAAAAAACCCACTTTAGGTATAA ATTTTTCACATCTTTCATAATTGGTTATTTGAAAATATTTGAATTCCTTT TAATTTTGAGGCCAGCCCACTTTTGACTTACCTTGGGCGCAATTCTTCAA ACAAAAGGAATGAAAGTTTAAAAAAATTACAAATGACTCACATCTTTTAG TTGTGTAAAGGCAATATTAATTGCTATGAAATACAAAAAAGTGAATTTAA CCAGAAAATTTGCAGAAAAAGCAACATTTTCAAAATTTTCTGAGGCAATT TTGAGTGCAGACAAGAAAGCCTGCTGAAATTGTAATTTTTCAAGCTTAAG CTGATATAAACAAGATGTCATAGCTCACCCCTTTTGTCCCACTCATTTTG ACATTTTAATTAAGTGATTCTTGATAGACTGTGTTATCAAAACAATCAGT TTTTAACCCCTCAGTTTCCTGTAAGAACTATATAAATTTAACACAATGTT GCGAAAATTAGTGTACTTTAGTACAATAGTAAATTGTTGTTTTTATGACC ATAATATTATAGATTATCAATAATTCATGTGTTTATTTTGCCTGTGAGAT TGAACTTTCTTTATTTCATATGCAGGATTATATGGAAGGCCAGCACCTGT GATAGTGGGACCACATGTAAGTGTCATTGAATTTTCCGTAAAAAAGTGAA ACCATCCTAATGTTCAGTGTGATCTTTTGGTCAATAATACAATGGCATCA TTCTATGACATTTTTAGTTTAATCTTCCCACATTTATCTTTTATGCTTCT GTCACTGTATTAATTAGAGTATACTTTTCCTTCCACAGCATAATTACTAT GATCAATCAAATGGATATCGAAGCTCAAGTAATCAACAACAACATGGAAA TTCATACCAGTCAACAACCCAAATCAGAATGCCAATGTACCAAAGAGGGA GTGGTGATGAAAGATATAGTTATGAGCATGGCTCATGGTATGTTTTCAAG GGTCGTCAAATTCATAATATGCATTGCAATGTCTTCTAACATTAATAAAC CATAAACCTGACGTAAAATCAGTCAATACGCCACTTGCAACCAGTCAGCT ATTGGGTCTGTGATGTAATGTTAGAAAACATCGCAATGCTGTATATCCTG GTATATCATGAATTGTTTAAAAATATAATTTTAGAGTGACAGGAAAAGTT TTATAAAGCTCCCGTTCTTTCAGAATACAACAAGATTTTAAGTTTTTTAT TTTATAACCAGGTATTATGTCAATTAAACATTATTTTGATTTTTCCTTCT TGTTTTTGTTAGGCCATCGCAAGTGCCTGTCCATGGTTATGCTGTAGGAT ATGGTGCTGGCGGCGTACCGAAAAATTATAATTATCGTTATCCACCACAT CCTGGAGTTGCATACTACGCACCAGGGTAAAAATAAATTTAGTCTTTTGT CATCAGTGATTTTTATAATAATCGGGTATAAATAAAAAGTTTGAACTGGT TTGAACCTTCATGCTTTCATATGATGCATTTGATTTAGAGTATGTGATTC TTAACTACCAAATTACTTGTTCAATGCCTTATATTCTTTTCTGAATCTAT TTTTTCATAATATGTAGACATGTTTCCCTTTATTTCTTTTTAGACATGGA TACCCAGGGATGACAGGAAGACCAGTAAAAGAACCGAAACGACCACACGT CAAAAAACCACTAAACGCTTTCATGTTATTCATGAAAGAGCAACGACCAA AAATTGCAGCTGAATATACATTGAAAGAAAGTGCAGCTATCAATCAAATA TTAGGGAAAAGGGTAAGTGATAGATTTTGAAATGAAGATAACAAATTTTA GGCTAGACATCGGACATTGCCCGACCCAAATAGCTTCTTGTCCGACCTGA AAATCATAATTTTTAAGCTAAAGCAACCCTGATCGAACATATTTTCCGAC CCACTTGAAATTGTTATTTCGAGCCTTAGACACATGCTGAATTTTGACAT ACTTGAGTACATAGGCATTAGTGTCAATCCGTATGATCTTAAATACATGT AACATTCTTTTTCAGTGGCATGCATTGGATAAGTCAGAACAAGCAAAATA TTATGAATTAGCAAGAAAAGAACGAGCAATACATATGCAATTATATCCTG GTTGGAGTGCCCGTGATAACTACGCTCAACTTGGAAGGAAAAAGAAACGA CCAAGAGATAAAAACGAAGGTATATTTTCATTTTTTTTGGAATCTATCAT TTTTTAAATCTTCTTGTCATAAGTATGACATGGTTATCTAAATTTCCAAC TATTCTAATGCAAAATGTTTGATTAGCTTTCTTCACAGTTTTCAAAGAAG TCAGAAGGATTTATTTTGTTTGGAGCTGCTACGTGATTGATTATCTTTTA TAATACTTTTCTTCTCTTAGAAATGAACCCAAAGAAATGTCGTGCACGTT ATGGTTTAGATCGTCAAGAACAATGGTGTAAACCGTGCAGGTCAGCTCAT AAACTTTTCATTGATTTCTATGTTTCTTTAAGCTTTTGATAACTCCCTAG ATTTTACAGTGTTCAAAAATTTTCCGTCTTAGCGAGGTGCCAAAAGAGGT TTTTCGTCTCCAAATTCAACAAAATTCTGCAAAACAATGAATTTGGCCAG ATTTGTTGTTTAAAGTCCATTTCCGTCTGTGATGAAAACTTCGCTTTGAC CACCAATTTTACCTCCAAAACCACTGTCATGACTTTTAGTTACAGCAGAG TTTCATTGTTACACTTTTCCTGAAAAATGGAGTAAAGCCTTGATCTTTTG TAAAGATATCAGAAAAATGGCACCAATATCATGCTTCGTGATTCCCCGGC AATTTGTCGTTATGAATACCCTGTATCAAATCCCTGGAGCTCGATTCTCA TCTGATTTCATTTCTGTCTATTTCTTACAGGAGGAAGAAGAAGTGTATTC GATTCATTGTTGGTGCTGATGGTGAAACTACTGAAGTACCTGATAAAGAA CAACAAACCGAAATAAATTCCGATTCAGATAATGAAAATACCAATGCAGA AAATCGTGCTTCTGCTCCTACTAACAATAATACTACAGACTCTTTGAAAG AAAATTTATCGGAGCGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007658XLOC_007658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013718-exon-sc0000171-1575043694:254912..255381TCONS_00013718-exon-sc0000171-1575043694:254912..255381Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:252531..252591TCONS_00013718-exon-sc0000171-1575043694:252531..252591Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:251366..251406TCONS_00013718-exon-sc0000171-1575043694:251366..251406Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:251045..251193TCONS_00013718-exon-sc0000171-1575043694:251045..251193Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:250606..250719TCONS_00013718-exon-sc0000171-1575043694:250606..250719Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:250220..250388TCONS_00013718-exon-sc0000171-1575043694:250220..250388Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:249813..249966TCONS_00013718-exon-sc0000171-1575043694:249813..249966Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:249542..249611TCONS_00013718-exon-sc0000171-1575043694:249542..249611Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1575043694:248912..249101TCONS_00013718-exon-sc0000171-1575043694:248912..249101Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:254912..255381TCONS_00013718-exon-sc0000171-1510915933:254912..255381Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:252531..252591TCONS_00013718-exon-sc0000171-1510915933:252531..252591Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:251366..251406TCONS_00013718-exon-sc0000171-1510915933:251366..251406Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:251045..251193TCONS_00013718-exon-sc0000171-1510915933:251045..251193Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:250606..250719TCONS_00013718-exon-sc0000171-1510915933:250606..250719Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:250220..250388TCONS_00013718-exon-sc0000171-1510915933:250220..250388Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:249813..249966TCONS_00013718-exon-sc0000171-1510915933:249813..249966Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:249542..249611TCONS_00013718-exon-sc0000171-1510915933:249542..249611Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1510915933:248912..249101TCONS_00013718-exon-sc0000171-1510915933:248912..249101Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:254912..255381TCONS_00013718-exon-sc0000171-1491911889:254912..255381Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:252531..252591TCONS_00013718-exon-sc0000171-1491911889:252531..252591Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:251366..251406TCONS_00013718-exon-sc0000171-1491911889:251366..251406Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:251045..251193TCONS_00013718-exon-sc0000171-1491911889:251045..251193Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:250606..250719TCONS_00013718-exon-sc0000171-1491911889:250606..250719Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:250220..250388TCONS_00013718-exon-sc0000171-1491911889:250220..250388Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:249813..249966TCONS_00013718-exon-sc0000171-1491911889:249813..249966Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:249542..249611TCONS_00013718-exon-sc0000171-1491911889:249542..249611Clytia hemisphaericaexon
TCONS_00013718-exon-sc0000171-1491911889:248912..249101TCONS_00013718-exon-sc0000171-1491911889:248912..249101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:248912..255381 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36396 0 1.54705 0 2.62814 0.0053537 0 3.17041e-05 2.82202e-08 0 0 0.0129018 0 0 0.711429 0.467345 1.58269 0.938401 0 0 2.14665 1.45945 2.79361e-07 5.02144 2.67262 0.73868 2.97205 0 3.19699 1.88841e-06
Blast
BLAST of TCONS_00013718 vs. Swiss-Prot (Human)
Match: TCF7 (Transcription factor 7 OS=Homo sapiens GN=TCF7 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.223e-40
Identity = 72/97 (74.23%), Postives = 84/97 (86.60%), Query Frame = 3
Query:  870 KEPKRPHVKKPLNAFMLFMKEQRPKIAAEYTLKESAAINQILGKRWHALDKSEQAKYYELARKERAIHMQLYPGWSARDNYAQLGRKKKRPRDKNEE 1160
            KE K+P +KKPLNAFML+MKE R K+ AE TLKESAAINQILG+RWHAL + EQAKYYELARKER +HMQLYPGWSARDNY   G+KK+R R+K++E
Sbjct:  262 KEAKKPTIKKPLNAFMLYMKEMRAKVIAECTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARDNY---GKKKRRSREKHQE 355          
The following BLAST results are available for this feature:
BLAST of TCONS_00013718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCF71.223e-4074.23Transcription factor 7 OS=Homo sapiens GN=TCF7 PE=... [more]
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