TCONS_00013676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013676
Unique NameTCONS_00013676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013676 ID=TCONS_00013676|Name=TCONS_00013676|organism=Clytia hemisphaerica|type=transcript|length=1257bp
AATGGAATTGAGAaggtttcattttttgaaatcaataTTGAGAATCAAGA
AATAGGTAAAGTTTCATAATACATTTTTCTTCCTATAATTTTTACACCAT
GTATTTGTTTTCTTTACGATTTAGACCAGAAATGGTAGTTGGATGGTATC
ATTCCCATCCGGGATTCGGATGTTGGTTATCAGGTGTTGATATCAATACA
CAGCAGAGCTTTGAAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTAGA
TCCTATCCAATCAGTCAAAGGAAAAGTTGTTATCGATGCTTTCCGTCTCA
TCAACCCTAATTCAATGGTATTGAGTCCTGAACCAAGACAAACCACTTCA
AATCTCGGACACTTACAAAAGCCCTCTATACAGgcACTTATTCACGGCTT
AAACAGACACTATTACTCAATCTCAATAAACTACAGGAAAAACGAACTCG
AACAAAAGATGTTGTTAAACTTACACAAGAAATCATGGATGGAAGGATTG
AACCTAAAAGATTATAATGAACATTGTCAAGGCAACGAAGAAACAGTTAA
AACTATGTTAGATTTGGTCAAGAATTATCACAAGGCGCTCGAAGACGAAG
ATTCGATGACGCCGGAACAACTCGCCATCAAAAACGTCGGGAAACAGGAT
CCAAAGAGACATTTAGAAGAGaaagttgatgacgtcatgaatacAAATAT
CGTTCAATGCTTAGGTGCCATGTTGGATTCCATATCGTTCTAAACGAATA
TGTGCCAGAACTTTTTATCATAACTAGGGAATGTTAAATAAATACGTATT
TTTACGAATTTCATCTAATGGCTCTGTGTTAGAGAGATAAAGATACTGTG
TGGCAGTTGAGTCGACATCATATTCCACTGAGTTTCATGGCGGTGTGATA
AAGCTAAGTAAACCGTTACGATTTTTCAACCAACTTAGATCACATCTAGA
ATATTTATGATTTGGGCTAGTAGAATCCTGAATTAGCACAGGCTTTTAGT
GATAAGTGATGTTGGCAAGAAGTTAAAATACGAAATTAAACTTGTCGTAC
TTTAATTAATAGTCTTTGGGTTTGCGATCTTCATAGATGCGTGCGTTTTA
TATCTGTTCTTAAGCGATAGATGGTTGAACTTATTCTAAATTCTGCTTTA
TGACTTTATGATATTTATTACGTTAGATTGTTggaatttaagattttttt
cattcaatagtTTTTTATCGTTTGAGATTAGAAGATAACTCAAGaaacat
tttatat
Run BLAST on NCBI

protein sequence of TCONS_00013676-protein

>TCONS_00013676-protein ID=TCONS_00013676-protein|Name=TCONS_00013676-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
MYLFSLRFRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVV
DPIQSVKGKVVIDAFRLINPNSMVLSPEPRQTTSNLGHLQKPSIQALIHG
LNRHYYSISINYRKNELEQKMLLNLHKKSWMEGLNLKDYNEHCQGNEETV
KTMLDLVKNYHKALEDEDSMTPEQLAIKNVGKQDPKRHLEEKVDDVMNTN
IVQCLGAMLDSISF
Run BLAST on NCBI

transcript from alignment at sc0000171:342136..346125+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013676 ID=TCONS_00013676|Name=TCONS_00013676|organism=Clytia hemisphaerica|type=transcript|length=3990bp|location=Sequence derived from alignment at sc0000171:342136..346125+ (Clytia hemisphaerica)
AATGGAATTGAGAaggtttcattttttgaaatcaataTTGAGAATCAAGA
AATAGGTAAAGTTTCATAATACATTTTTCTTCCTATAATTTTTACACCAT
GTATTTGTTTTCTTTACGATTTAGACCAGAAATGGTAGTTGGATGGTATC
ATTCCCATCCGGGATTCGGATGTTGGTTATCAGGTGTTGATATCAATACA
CAGCAGAGCTTTGAAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTAGA
TCCTATCCAATCAGTCAAAGGAAAAGTAAGTAAACATTGgttcttttttc
tgttttcttagTTTGAGCTTCCAGAGTTTTTGCCATTGCAATAGGTAACA
ACAGCTTTGAATCCATTTTAACATCAAACGCCATTTTTAACTCAGTTAAG
CCAGTCTGACCAATACTTTCTTTCTGTATGTCACAGATAAAGATAGTATG
GCTAAGTTCTTCCGTTTCAGCGAAGTATATAAAGAGctttttccgtctca
aaattctgtatagtttatcaaaattttaacaatAAGTGTTataatttgct
gtgtaaaatcttAGACGAAAAATCTTGCTTTTTAAAGCCTGCTGTTAGAA
ATATTATTGTATTTTCTAATAGGTTGTTATCGATGCTTTCCGTCTCATCA
ACCCTAATTCAATGGTATTGAGTCCTGAACCAAGACAAACCACTTCAAAT
CTCGGACACTTACAAAAGCCCTCTATACAGGTAAGAATGAACAACTACAA
TGAAGTTtataatatttgataaaatggGGAATTCCTTGCAAAAACACCAC
AAATGTTTTGAAGTGCTCTAATTTATCTAGTCTTATCTCAGATCttttca
aaatcgaaatatccaaTGAAATGAAGTGGAACTGTTGAAATCGCGATTCT
CACCTGAACttttgaattctgaaaaacgttaaaatatccATAATAATTAT
CAATATATTTCGAACTTCACTATAGCGACATTGACTTATTGCTATacaac
tttcatcatcaggttgtccattcagcatctagctcgttttctttactttt
aaattttgaagttcCTGAAGAACAACCCATATAGGGATATTTTAGATCTA
AGTGGTGAGAAATTGCTGAAAAAATAATAGACAATTTTTTTGGTGTCAAT
TAAGAAGCATATGTGGGATTCTTTTTTAGTCATGATTTTTACCACTATTT
CACTACTATTTGAACCCAACccaatttgtttcattttcttttatttcagg
cACTTATTCACGGCTTAAACAGACACTATTACTCAATCTCAATAAACTAC
AGGAAAAACGAACTCGAACAAAAGGTATTATAGCCTTAATCTTAacttaa
agtctatttcaaattagctggcagtgttttttcaaacctcaataaatttt
gatagaatttgaattagttagcggttttgtgctcgttaaaaagccggagt
ggaatattatcaaaaaagaaaaaaattcaaaaaatggaaaaacgaagatg
aaaaatgaagaagaagaaaatcaacttgttgtagaataatgctatgatct
tcatttttgaatcagaaactcttcaatcttagaacgtcataaatgtaaaa
aaatatttaaaaaatatttattcaatcaaaaaatacagcttaaagctttg
ccctggttgacttaaaaaaggactcttttttgatgatttttgaagtcaat
cattgttaaactttggactatatctttcgatggaataaacttttttgaaa
ttttttttcacattaatgatgttctaagatcaaagaatcactcgtATGAT
AATCTATACTTGTagcacaattattgaagaagttgattttcttcttcttc
attttcaatcttcattttccgatcttttgttatttttttctttatgacaa
taccccactcctgtttgtcttttcaacgagcacaaaatcgctacttaatt
taatcaaaagttatcgaggtttgaaaaaacactacTAGCTAATTTGAATT
TGCTNattctatcaaaagttattgaggtttgaaaaaacactacTAGCTAA
TTTGAATTTGCTGGAATTTGAAATACTTTAATTCTATGGTCCTTCTGGAA
AACATTCACATTGCTAAAGACAAATTCTTGTTTTTGGAACACCTCATAAT
AcgcttttaaatgttttttgttAGATGTTGTTAAACTTACACAAGAAATC
ATGGATGGAAGGATTGAACCTAAAAGATTATAATGAACATTGTCAAGGCA
ACGAAGAAACAGTTAAAACTATGTTAGATTTGGTCAAGAATTATCACAAG
GTAATAGCCATTATCACTCTCTattactttttccccaaatttctcatgca
aaataagTTTATAATAATGTATcaattttaagttttctttcTTATGAAAG
taattttacattcattgaataaAATGTATTTGCTTAAGAGATAGATGAAA
TAGTTGAAGTCTAAAATATTCCTCCAATGCAATGTGAAATAGTAAATCGT
TGCTCTGACCATATTTCCATATTCCCTATTtccataattttcaattttta
attcttGTACTTTTTCATCTTTAGGCGCTCGAAGACGAAGATTCGATGAC
GCCGGAACAACTCGCCATCAAAAACGTCGGGAAACAGGTAAGGAAATTTC
ACTTTCATAAGGTATTGCATCACTGAGCTCTAAAGTAAGTATTGGAATAG
ACCTCATATTtaacaagaaagcctaagcggcGTAAAGGTCCAGCAGTGTT
GGCATTGTCAGCATATTTTTCCGCTGCAGAATCGCCATAAAACAGGAgcg
aattttttcaatgtatagaCTCGAGTCGGGCGAGAAATAAAGATTTAATT
ACTTTAAGATTTGACCATATAAGTTGGAGGTATTAATTATATGTGTTTTT
TTCTTACGCACGCTCACAATAGAAAGTCAGGTAGTTCGATTTCAGCCTGG
AATCGTCGATTGATAATTGCGCGCATAGGGCCCgacaaagtcaaattttt
tcgaccggttgtgttttaaaggcccattgcgctgcgcgctgggccaataa
tAGCAGCCTGCTTCAAAAATTATATGCGGATGTTCATTCCAGTTTCcctt
ttagatattttttctcCTCCAAAACTTTCGTTCGATGGTTTCGTTCTATG
AGAGCCTTAAATTGGTGATGGTGTTTTAGAATATTTAAACTTTCCGAATA
TTAgaagaattctttttttgaagTAGCTTGCTTGGTTTGCTGTTAAAGTT
TGATGTTAAGACGCGAGTCTAATGCTTTAAGATTGGGGTTAGTTACCATG
GTCACTGCCTGACAGTGTTGATTTACAATCAAATGCATTTGGTGAAAATT
CTAAATTATTTCCTTTTTGTTTCCTTTCAGGATCCAAAGAGACATTTAGA
AGAGaaagttgatgacgtcatgaatacAAATATCGTTCAATGCTTAGGTG
CCATGTTGGATTCCATATCGTTCTAAACGAATATGTGCCAGAACTTTTTA
TCATAACTAGGGAATGTTAAATAAATACGTATTTTTACGAATTTCATCTA
ATGGCTCTGTGTTAGAGAGATAAAGATACTGTGTGGCAGTTGAGTCGACA
TCATATTCCACTGAGTTTCATGGCGGTGTGATAAAGCTAAGTAAACCGTT
ACGATTTTTCAACCAACTTAGATCACATCTAGAATATTTATGATTTGGGC
TAGTAGAATCCTGAATTAGCACAGGCTTTTAGTGATAAGTGATGTTGGCA
AGAAGTTAAAATACGAAATTAAACTTGTCGTACTTTAATTAATAGTCTTT
GGGTTTGCGATCTTCATAGATGCGTGCGTTTTATATCTGTTCTTAAGCGA
TAGATGGTTGAACTTATTCTAAATTCTGCTTTATGACTTTATGATATTTA
TTACGTTAGATTGTTggaatttaagatttttttcattcaatagtTTTTTA
TCGTTTGAGATTAGAAGATAACTCAAGaaacattttatat

Coding sequence (CDS) from alignment at sc0000171:342136..346125+

>TCONS_00013676 ID=TCONS_00013676|Name=TCONS_00013676|organism=Clytia hemisphaerica|type=CDS|length=3870bp|location=Sequence derived from alignment at sc0000171:342136..346125+ (Clytia hemisphaerica)
ATGTATTTGTTTTCTTTACGATTTAGACCAGAAATGGTAGTTGGATGGTA
TCATTCCCATCCGGGATTCGGATGTTGGTTATCAGGTGTTGATATCAATA
CACAGCAGAGCTTTGAAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTA
GATCCTATCCAATCAGTCAAAGGAAAAGTTGTTATCGATGCTTTCCGTCT
CATCAACCCTAATTCAATGGTATTGAGTCCTGAACCAAGACAAACCACTT
CAAATCTCGGACACTTACAAAAGCCCTCTATACAGgcACTTATTCACGGC
TTAAACAGACACTATTACTCAATCTCAATAAACTACAGGAAAAACGAACT
CGAACAAAAGATGTTGTTAAACTTACACAAGAAATCATGGATGGAAGGAT
TGAACCTAAAAGATTATAATGAACATTGTCAAGGCAACGAAGAAACAGTT
AAAACTATGTTAGATTTGGTCAAGAATTATCACAAGGCGCTCGAAGACGA
AGATTCGATGACGCCGGAACAACTCGCCATCAAAAACGTCGGGAAACAGG
ATCCAAAGAGACATTTAGAAGAGaaagttgatgacgtcatgaatacAAAT
ATCGTTCAATGCTTAGGTGCCATGTTGGATTCCATATCGTTCTAAATGTA
TTTGTTTTCTTTACGATTTAGACCAGAAATGGTAGTTGGATGGTATCATT
CCCATCCGGGATTCGGATGTTGGTTATCAGGTGTTGATATCAATACACAG
CAGAGCTTTGAAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTAGATCC
TATCCAATCAGTCAAAGGAAAAGTTGTTATCGATGCTTTCCGTCTCATCA
ACCCTAATTCAATGGTATTGAGTCCTGAACCAAGACAAACCACTTCAAAT
CTCGGACACTTACAAAAGCCCTCTATACAGgcACTTATTCACGGCTTAAA
CAGACACTATTACTCAATCTCAATAAACTACAGGAAAAACGAACTCGAAC
AAAAGATGTTGTTAAACTTACACAAGAAATCATGGATGGAAGGATTGAAC
CTAAAAGATTATAATGAACATTGTCAAGGCAACGAAGAAACAGTTAAAAC
TATGTTAGATTTGGTCAAGAATTATCACAAGGCGCTCGAAGACGAAGATT
CGATGACGCCGGAACAACTCGCCATCAAAAACGTCGGGAAACAGGATCCA
AAGAGACATTTAGAAGAGaaagttgatgacgtcatgaatacAAATATCGT
TCAATGCTTAGGTGCCATGTTGGATTCCATATCGTTCTAAATGTATTTGT
TTTCTTTACGATTTAGACCAGAAATGGTAGTTGGATGGTATCATTCCCAT
CCGGGATTCGGATGTTGGTTATCAGGTGTTGATATCAATACACAGCAGAG
CTTTGAAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTAGATCCTATCC
AATCAGTCAAAGGAAAAGTTGTTATCGATGCTTTCCGTCTCATCAACCCT
AATTCAATGGTATTGAGTCCTGAACCAAGACAAACCACTTCAAATCTCGG
ACACTTACAAAAGCCCTCTATACAGgcACTTATTCACGGCTTAAACAGAC
ACTATTACTCAATCTCAATAAACTACAGGAAAAACGAACTCGAACAAAAG
ATGTTGTTAAACTTACACAAGAAATCATGGATGGAAGGATTGAACCTAAA
AGATTATAATGAACATTGTCAAGGCAACGAAGAAACAGTTAAAACTATGT
TAGATTTGGTCAAGAATTATCACAAGGCGCTCGAAGACGAAGATTCGATG
ACGCCGGAACAACTCGCCATCAAAAACGTCGGGAAACAGGATCCAAAGAG
ACATTTAGAAGAGaaagttgatgacgtcatgaatacAAATATCGTTCAAT
GCTTAGGTGCCATGTTGGATTCCATATCGTTCTAAATGTATTTGTTTTCT
TTACGATTTAGACCAGAAATGGTAGTTGGATGGTATCATTCCCATCCGGG
ATTCGGATGTTGGTTATCAGGTGTTGATATCAATACACAGCAGAGCTTTG
AAGCCCTCTCTGAACGCGCTGTAGCTGTCGTTGTAGATCCTATCCAATCA
GTCAAAGGAAAAGTTGTTATCGATGCTTTCCGTCTCATCAACCCTAATTC
AATGGTATTGAGTCCTGAACCAAGACAAACCACTTCAAATCTCGGACACT
TACAAAAGCCCTCTATACAGgcACTTATTCACGGCTTAAACAGACACTAT
TACTCAATCTCAATAAACTACAGGAAAAACGAACTCGAACAAAAGATGTT
GTTAAACTTACACAAGAAATCATGGATGGAAGGATTGAACCTAAAAGATT
ATAATGAACATTGTCAAGGCAACGAAGAAACAGTTAAAACTATGTTAGAT
TTGGTCAAGAATTATCACAAGGCGCTCGAAGACGAAGATTCGATGACGCC
GGAACAACTCGCCATCAAAAACGTCGGGAAACAGGATCCAAAGAGACATT
TAGAAGAGaaagttgatgacgtcatgaatacAAATATCGTTCAATGCTTA
GGTGCCATGTTGGATTCCATATCGTTCTAAATGTATTTGTTTTCTTTACG
ATTTAGACCAGAAATGGTAGTTGGATGGTATCATTCCCATCCGGGATTCG
GATGTTGGTTATCAGGTGTTGATATCAATACACAGCAGAGCTTTGAAGCC
CTCTCTGAACGCGCTGTAGCTGTCGTTGTAGATCCTATCCAATCAGTCAA
AGGAAAAGTTGTTATCGATGCTTTCCGTCTCATCAACCCTAATTCAATGG
TATTGAGTCCTGAACCAAGACAAACCACTTCAAATCTCGGACACTTACAA
AAGCCCTCTATACAGgcACTTATTCACGGCTTAAACAGACACTATTACTC
AATCTCAATAAACTACAGGAAAAACGAACTCGAACAAAAGATGTTGTTAA
ACTTACACAAGAAATCATGGATGGAAGGATTGAACCTAAAAGATTATAAT
GAACATTGTCAAGGCAACGAAGAAACAGTTAAAACTATGTTAGATTTGGT
CAAGAATTATCACAAGGCGCTCGAAGACGAAGATTCGATGACGCCGGAAC
AACTCGCCATCAAAAACGTCGGGAAACAGGATCCAAAGAGACATTTAGAA
GAGaaagttgatgacgtcatgaatacAAATATCGTTCAATGCTTAGGTGC
CATGTTGGATTCCATATCGTTCTAAATGTATTTGTTTTCTTTACGATTTA
GACCAGAAATGGTAGTTGGATGGTATCATTCCCATCCGGGATTCGGATGT
TGGTTATCAGGTGTTGATATCAATACACAGCAGAGCTTTGAAGCCCTCTC
TGAACGCGCTGTAGCTGTCGTTGTAGATCCTATCCAATCAGTCAAAGGAA
AAGTTGTTATCGATGCTTTCCGTCTCATCAACCCTAATTCAATGGTATTG
AGTCCTGAACCAAGACAAACCACTTCAAATCTCGGACACTTACAAAAGCC
CTCTATACAGgcACTTATTCACGGCTTAAACAGACACTATTACTCAATCT
CAATAAACTACAGGAAAAACGAACTCGAACAAAAGATGTTGTTAAACTTA
CACAAGAAATCATGGATGGAAGGATTGAACCTAAAAGATTATAATGAACA
TTGTCAAGGCAACGAAGAAACAGTTAAAACTATGTTAGATTTGGTCAAGA
ATTATCACAAGGCGCTCGAAGACGAAGATTCGATGACGCCGGAACAACTC
GCCATCAAAAACGTCGGGAAACAGGATCCAAAGAGACATTTAGAAGAGaa
agttgatgacgtcatgaatacAAATATCGTTCAATGCTTAGGTGCCATGT
TGGATTCCATATCGTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007643XLOC_007643Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013676-proteinTCONS_00013676-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013676-exon-sc0000171-1491911889:342136..342410TCONS_00013676-exon-sc0000171-1491911889:342136..342410Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:342136..342410TCONS_00013676-exon-sc0000171-1510915933:342136..342410Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:342136..342410TCONS_00013676-exon-sc0000171-1575043694:342136..342410Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1491911889:342758..342865TCONS_00013676-exon-sc0000171-1491911889:342758..342865Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:342758..342865TCONS_00013676-exon-sc0000171-1510915933:342758..342865Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:342758..342865TCONS_00013676-exon-sc0000171-1575043694:342758..342865Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1491911889:343385..343459TCONS_00013676-exon-sc0000171-1491911889:343385..343459Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:343385..343459TCONS_00013676-exon-sc0000171-1510915933:343385..343459Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:343385..343459TCONS_00013676-exon-sc0000171-1575043694:343385..343459Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1491911889:344310..344435TCONS_00013676-exon-sc0000171-1491911889:344310..344435Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:344310..344435TCONS_00013676-exon-sc0000171-1510915933:344310..344435Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:344310..344435TCONS_00013676-exon-sc0000171-1575043694:344310..344435Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1491911889:344710..344772TCONS_00013676-exon-sc0000171-1491911889:344710..344772Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:344710..344772TCONS_00013676-exon-sc0000171-1510915933:344710..344772Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:344710..344772TCONS_00013676-exon-sc0000171-1575043694:344710..344772Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1491911889:345516..346125TCONS_00013676-exon-sc0000171-1491911889:345516..346125Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1510915933:345516..346125TCONS_00013676-exon-sc0000171-1510915933:345516..346125Clytia hemisphaericaexon
TCONS_00013676-exon-sc0000171-1575043694:345516..346125TCONS_00013676-exon-sc0000171-1575043694:345516..346125Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:342136..346125 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
173.462	172.52	214.226	207.561	189.594	140.873	189.282	199.858	132.879	148.762	118.635	85.0201	56.849	56.4429	88.3477	100.587	121.755	112.76	32.1717	43.9458	69.1929	70.3096	82.4818	78.3403	164.394	159.401	108.017	79.4119	90.2903	66.2278
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024969Rpn11/EIF3F_C
IPR000555JAMM/MPN+_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00013676 vs. Swiss-Prot (Human)
Match: PSDE (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 377.481 bits (968), Expect = 1.639e-128
Identity = 177/206 (85.92%), Postives = 189/206 (91.75%), Query Frame = 3 
Query:  123 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNSMVLSPEPRQTTSNLGHLQKPSIQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWMEGLNLKDYNEHCQGNEETVKTMLDLVKNYHKALEDEDSMTPEQLAIKNVGKQDPKRHLEEKVDDVMNTNIVQCLGAMLDSISF 740
            RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLIN N MVL  EPRQTTSNLGHL KPSIQALIHGLNRHYYSI+INYRKNELEQKMLLNLHKKSWMEGL L+DY+EHC+ NE  VK ML+L KNY+KA+E+ED MTPEQLAIKNVGKQDPKRHLEE VD +M +NIVQCL AMLD++ F
Sbjct:  104 RPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLDTVVF 309
The following BLAST results are available for this feature:
BLAST of TCONS_00013676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSDE1.639e-12885.9226S proteasome non-ATPase regulatory subunit 14 OS... [more]
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