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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013671 ID=TCONS_00013671|Name=TCONS_00013671|organism=Clytia hemisphaerica|type=transcript|length=1893bpRun BLAST on NCBI protein sequence of TCONS_00013671-protein >TCONS_00013671-protein ID=TCONS_00013671-protein|Name=TCONS_00013671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp LLSYKSVCQFFTYSYTFSCNLCLLTSKMDTTTQDDQQLRDIQRQYLDFLDRun BLAST on NCBI transcript from alignment at sc0000171:293105..306059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013671 ID=TCONS_00013671|Name=TCONS_00013671|organism=Clytia hemisphaerica|type=transcript|length=12955bp|location=Sequence derived from alignment at sc0000171:293105..306059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000171:293105..306059+ >TCONS_00013671 ID=TCONS_00013671|Name=TCONS_00013671|organism=Clytia hemisphaerica|type=CDS|length=28350bp|location=Sequence derived from alignment at sc0000171:293105..306059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013671 vs. Swiss-Prot (Human)
Match: MCM3 (DNA replication licensing factor MCM3 OS=Homo sapiens GN=MCM3 PE=1 SV=3) HSP 1 Score: 874.389 bits (2258), Expect = 0.000e+0 Identity = 418/584 (71.58%), Postives = 503/584 (86.13%), Query Frame = 3
Query: 144 FLDDDADQGFYHAKVRDMIERNEYRLVININDLRKKNPERAMKLLNDSQEEMIGAQNALKEFVGYADTTYAKKVEEFYIGFEGSFGSKHVSPRSLSARNLGNLVCCEGIVTKCSLVSPKVVKSVHYCPKTAKTMERRYTDLTSLNPFPSSTAYPTKDEDGNLLETEYGLSVYKDHQTFTIQEMPEKAPAGQLPRSVDIVSDNDLADKCKPGDRIQVIGIYRCLPSKRQGFTPGTFRTILIANNIKVMSKEVQPNFSPEDLTKIKKFSRSKSEDVFELLAKSLAPSIHGHNYIKKAILCLLLGGTEKVLDNGTRLRGDINIMMVGDPSTAKSQLLRYVLHTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRTAIHEVMEQGRVTIAKAGIHAKLNARCSVLAAANPVYGRYDPFKTPMDNIGMQDSLLSRFDLLFIVLDKMDPDSDKKISEHVLRMHRYRNPGEQDGDPLPFGGTNDLLATYANXXXXXXXXXXRVYAKKDSQLYG-DNRQEKFVSAQFMKKYIHVARNIKPMLSQKAADLISERYADLRDQDQQGS 1892
FLDD+ DQG Y +KVR++I N+YRL++N+NDLR+KN +RA +LLN++ EE++ Q ALK+FV D TYAK+ EEFY+G EGSFGSKHVSPR+L++ L +VC EGIVTKCSLV PKVV+SVHYCP T KT+ERRY+DLT+L FPSS+ YPTKDE+ N LETEYGLSVYKDHQT TIQEMPEKAPAGQLPRSVD++ D+DL DK KPGDR+QV+G YRCLP K+ G+T GTFRT+LIA N+K MSK+ QP+FS ED+ KIKKFS+++S+D+F+ LAKSLAPSIHGH+Y+KKAILCLLLGG E+ L+NG+ +RGDINI+++GDPS AKSQLLRYVL TAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSD+DRTAIHEVMEQGRVTIAKAGIHA+LNARCSVLAAANPVYGRYD +KTPM+NIG+QDSLLSRFDLLFI+LD+MDP+ D++IS+HVLRMHRYR PGEQDGD +P G D+LAT ++E++ T++Y K D+ L+G ++EK VSA FMKKYIHVA+ IKP+L+Q++A I+E Y+ LR QD S
Sbjct: 22 FLDDEEDQGIYQSKVRELISDNQYRLIVNVNDLRRKNEKRANRLLNNAFEELVAFQRALKDFVASIDATYAKQYEEFYVGLEGSFGSKHVSPRTLTSCFLSCVVCVEGIVTKCSLVRPKVVRSVHYCPATKKTIERRYSDLTTLVAFPSSSVYPTKDEENNPLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDKAKPGDRVQVVGTYRCLPGKKGGYTSGTFRTVLIACNVKQMSKDAQPSFSAEDIAKIKKFSKTRSKDIFDQLAKSLAPSIHGHDYVKKAILCLLLGGVERDLENGSHIRGDINILLIGDPSVAKSQLLRYVLCTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDMDRTAIHEVMEQGRVTIAKAGIHARLNARCSVLAAANPVYGRYDQYKTPMENIGLQDSLLSRFDLLFIMLDQMDPEQDREISDHVLRMHRYRAPGEQDGDAMPLGSAVDILATDDPNFSQEDQQDTQIYEKHDNLLHGTKKKKEKMVSAAFMKKYIHVAKIIKPVLTQESATYIAEEYSRLRSQDSMSS 605 The following BLAST results are available for this feature:
BLAST of TCONS_00013671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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