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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013641 ID=TCONS_00013641|Name=TCONS_00013641|organism=Clytia hemisphaerica|type=transcript|length=1049bp
GTTGAGTTTCCACAGGAGCGACTTCAGTCTTTTCGGATGGTTGATTTTCC
ACAGGAGCGACTTCAGTCTTTTCAGATGGTTGAGCTTCCACAGGAGCGAC
TTCAGTCTTTTCGGATGGTTGAGTTTCCACAGGAGCGACCTCAGTCTTTT
CAGATGGTTGAGCTTCCACAAGAGTGACTTCTGTCTTTTTAGAAGGTTTA
CTTTCAACTTGAGCGACTTCAGTCTTTTCGGATAGTTGGACTTGCTCTGG
AGATATTTCGATCTCTATTGATGGTTTTGCCTTCTCTTGAGTCAATTCAG
TCCTTACTAACTGTCCAGTTTCAATTGGTGCCATTTCCATGACCTTTGAT
GCATGTGCTTCCATCAAAGATATTACAGAGCTCAATTCTTCTGGAAGGTT
CTCGTTCGATGAGAGAGCATGTCTGTCAAGTTCTTGTAATTTGATGACAA
CAGAAGCCTTCAGCATATCCAATTCTCCATGGTCCTGCAAAGGCACACCA
GAAATATCCAAAGCTACAAATTGttcaatcttttctccaagagATTGTCT
CTGAAATAAGATATCTTTTGACATTTCTACTTTATCGATCTCCATAACTG
CTTTACATCTTTCCAAAGAGGACTCCAGACTAGTAAGATCAGCCAGAATC
TCCCTCCCTTCGCTGGTAACGTCTTGTTTAAATTCAATCTTTTGATTGCA
GGAATGAGTCAAGTCTTGAAAATTGGACAACAAACTAGTGATTCTATCTG
CGGAAGTTTTCATTTTACATTCAATAAAATCATGATCAACTACTGGTAAT
TCTGAGACATCAACAGTCTCAAATTCACTGATATCTTTCAGAGCAGAGCT
TATACGTTCTGAAAAAATCGCATAAGAAGCTTTCATCTCCGTTAAATTCT
CCAGTTTATTGATACCATCAACTTCATCCTCTAATGGTTTCAGTAAAGCA
TCTGAAGCATCCAGAATCATTTCAGCTTCGAATTTATTGTCCTGACATTT
ATTCAGATAGTGAGCTTTCTGATCAAGTAACTGTTCCAATTCGGTATGA Run BLAST on NCBI protein sequence of TCONS_00013641-protein >TCONS_00013641-protein ID=TCONS_00013641-protein|Name=TCONS_00013641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp
HTELEQLLDQKAHYLNKCQDNKFEAEMILDASDALLKPLEDEVDGINKLE
NLTEMKASYAIFSERISSALKDISEFETVDVSELPVVDHDFIECKMKTSA
DRITSLLSNFQDLTHSCNQKIEFKQDVTSEGREILADLTSLESSLERCKA
VMEIDKVEMSKDILFQRQSLGEKIEQFVALDISGVPLQDHGELDMLKASV
VIKLQELDRHALSSNENLPEELSSVISLMEAHASKVMEMAPIETGQLVRT
ELTQEKAKPSIEIEISPEQVQLSEKTEVAQVESKPSKKTEVTLVEAQPSE
KTEVAPVETQPSEKTEVAPVEAQPSEKTEVAPVENQPSEKTEVAPVETQ Run BLAST on NCBI transcript from alignment at sc0000170:302691..303739 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013641 ID=TCONS_00013641|Name=TCONS_00013641|organism=Clytia hemisphaerica|type=transcript|length=1049bp|location=Sequence derived from alignment at sc0000170:302691..303739 (Clytia hemisphaerica)
TCATACCGAATTGGAACAGTTACTTGATCAGAAAGCTCACTATCTGAATA
AATGTCAGGACAATAAATTCGAAGCTGAAATGATTCTGGATGCTTCAGAT
GCTTTACTGAAACCATTAGAGGATGAAGTTGATGGTATCAATAAACTGGA
GAATTTAACGGAGATGAAAGCTTCTTATGCGATTTTTTCAGAACGTATAA
GCTCTGCTCTGAAAGATATCAGTGAATTTGAGACTGTTGATGTCTCAGAA
TTACCAGTAGTTGATCATGATTTTATTGAATGTAAAATGAAAACTTCCGC
AGATAGAATCACTAGTTTGTTGTCCAATTTTCAAGACTTGACTCATTCCT
GCAATCAAAAGATTGAATTTAAACAAGACGTTACCAGCGAAGGGAGGGAG
ATTCTGGCTGATCTTACTAGTCTGGAGTCCTCTTTGGAAAGATGTAAAGC
AGTTATGGAGATCGATAAAGTAGAAATGTCAAAAGATATCTTATTTCAGA
GACAATctcttggagaaaagattgaaCAATTTGTAGCTTTGGATATTTCT
GGTGTGCCTTTGCAGGACCATGGAGAATTGGATATGCTGAAGGCTTCTGT
TGTCATCAAATTACAAGAACTTGACAGACATGCTCTCTCATCGAACGAGA
ACCTTCCAGAAGAATTGAGCTCTGTAATATCTTTGATGGAAGCACATGCA
TCAAAGGTCATGGAAATGGCACCAATTGAAACTGGACAGTTAGTAAGGAC
TGAATTGACTCAAGAGAAGGCAAAACCATCAATAGAGATCGAAATATCTC
CAGAGCAAGTCCAACTATCCGAAAAGACTGAAGTCGCTCAAGTTGAAAGT
AAACCTTCTAAAAAGACAGAAGTCACTCTTGTGGAAGCTCAACCATCTGA
AAAGACTGAGGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACTGAAG
TCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCGCTCCTGTG
GAAAATCAACCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAAC Coding sequence (CDS) from alignment at sc0000170:302691..303739 >TCONS_00013641 ID=TCONS_00013641|Name=TCONS_00013641|organism=Clytia hemisphaerica|type=CDS|length=1047bp|location=Sequence derived from alignment at sc0000170:302691..303739 (Clytia hemisphaerica)
CATACCGAATTGGAACAGTTACTTGATCAGAAAGCTCACTATCTGAATAA
ATGTCAGGACAATAAATTCGAAGCTGAAATGATTCTGGATGCTTCAGATG
CTTTACTGAAACCATTAGAGGATGAAGTTGATGGTATCAATAAACTGGAG
AATTTAACGGAGATGAAAGCTTCTTATGCGATTTTTTCAGAACGTATAAG
CTCTGCTCTGAAAGATATCAGTGAATTTGAGACTGTTGATGTCTCAGAAT
TACCAGTAGTTGATCATGATTTTATTGAATGTAAAATGAAAACTTCCGCA
GATAGAATCACTAGTTTGTTGTCCAATTTTCAAGACTTGACTCATTCCTG
CAATCAAAAGATTGAATTTAAACAAGACGTTACCAGCGAAGGGAGGGAGA
TTCTGGCTGATCTTACTAGTCTGGAGTCCTCTTTGGAAAGATGTAAAGCA
GTTATGGAGATCGATAAAGTAGAAATGTCAAAAGATATCTTATTTCAGAG
ACAATctcttggagaaaagattgaaCAATTTGTAGCTTTGGATATTTCTG
GTGTGCCTTTGCAGGACCATGGAGAATTGGATATGCTGAAGGCTTCTGTT
GTCATCAAATTACAAGAACTTGACAGACATGCTCTCTCATCGAACGAGAA
CCTTCCAGAAGAATTGAGCTCTGTAATATCTTTGATGGAAGCACATGCAT
CAAAGGTCATGGAAATGGCACCAATTGAAACTGGACAGTTAGTAAGGACT
GAATTGACTCAAGAGAAGGCAAAACCATCAATAGAGATCGAAATATCTCC
AGAGCAAGTCCAACTATCCGAAAAGACTGAAGTCGCTCAAGTTGAAAGTA
AACCTTCTAAAAAGACAGAAGTCACTCTTGTGGAAGCTCAACCATCTGAA
AAGACTGAGGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACTGAAGT
CGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCGCTCCTGTGG
AAAATCAACCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013641-exon-sc0000170-1491911889:302691..303739 | TCONS_00013641-exon-sc0000170-1491911889:302691..303739 | Clytia hemisphaerica | exon |
| TCONS_00013641-exon-sc0000170-1510915933:302691..303739 | TCONS_00013641-exon-sc0000170-1510915933:302691..303739 | Clytia hemisphaerica | exon |
| TCONS_00013641-exon-sc0000170-1575043694:302691..303739 | TCONS_00013641-exon-sc0000170-1575043694:302691..303739 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:302691..303739 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR032675 | L_dom-like |
Blast
The following BLAST results are available for this feature:
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