TCONS_00013610 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00013610
Unique Name	TCONS_00013610
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3449

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000170:298294..302553-

transcript sequence

>TCONS_00013610 ID=TCONS_00013610|Name=TCONS_00013610|organism=Clytia hemisphaerica|type=transcript|length=3449bp
CTGGTTCTGCTCAAACATTTCTTCAATAGAATCTAAAGGATGTTTTAAAT
CATCCAGAAGTTCACTGACAACGTTTTGATGTTTATAAATGGCAAGCTCC
AGCAATCTGACTTTAAGTTGGATATTGATTTGACTAGCTCCTTTTTGGTC
TTCGCAGATCTCGTTGGTGATTTCATCTACTGTTTTTGCCTCTTCTTCCG
GCAATAACCTCAACGTTTGGTGATCATTCGGAGCATTTGTAATTTCTGAA
TCAATTTTTAGCTCTTCGGGAGACGACCCGGACATGGTTTGCTGGATAGA
TTCTGCATCCCTAGAATCGTCGGAAAACGGTCTCTGAACATTTTCGAGAT
CTGTAATTGTAGGCAGGCTCTCACCTGATAGCACGGAAATATTTTGCTGT
TGCTGAAGGGTTGGGGAATCTACATTCCTTGAATCACCACACGTGGATTG
TTCTGAAATCGTTTCAAGCTTTTTACTTGTTGATAATGATAAATCGTTCA
TAGAGTCACTCGAACTTGATATCAAGGGTGGAAGATCTTCACCAGAACTT
TCGGATTCACCAGAAGTATCTTTGATTACTGGAGAATCTAGATTCCTTAA
ATTTCCATTttgttcttcatcttcttcCCTTGGAATAGTATCAGAAACTT
GAAGGTCGATCGTGGAATTAATAAAAGTTTCAGCTCCCGAAGGTGGCTCT
GATCCTTTCTGAGCGATTGGAAGTCCATCGCGAGCTTGTACTTTTTGTTG
ATTTGGTGGCGATTGAGATTTTGCTTCCTTGTCTTGTAACATGTCGACAG
TTTCTGGATCATTGAACGAGTCAGACTCTAAAGTATCCAGCGCATCTACA
GTTGGTTGTTTCTCTATCCAGGAAGACGAAGTGAAAGGTTCTTGACCAAT
TATTGGTTCTACAACCGTCTCCATATTCCCACTTGTTGCAAATGAAATAT
CATCTAGCAACTCACTTGAACTTGATATTAAAGGCGTAAGACGATCTACA
GAACTGTCAAGATTTTCTTCGGATGTTTCTGGAGTACTTGAGCTTCCTGC
TTCAGATACACTTAGTTCCATAGTCCTTTCCAATACATAATGTTCTGGAG
ATTCCCGATTCACCATGGAGAAATCATCTATAACGATCCTTTTGGATTTA
GCAGGAATTAGCTCGTTTTGATTCAAATCTGATGCATTTTCTGGTATACT
TTGATCTGAAGACTCTTGATCCATAGAATTGGTTTTGGCGGTCTCGGGGG
ATACATCTTCACAGTTTGATATAGATGTTTCGTCCATTGAAGAAGAGCTG
TCAAATACATTAAGGTCCTGTGTCAAATCTAAACGACTTCCCTCAAAACT
CACAGCACTACCTTCAGGAGATAGTATTGAGGTGCTCGATTCTTGGAAAC
TTTCAACAGTTTCAGAGCTATATTCGGgagattgatttgaaaataacttg
CGTTTAATAGTATCTCGCTCTTGAGATTTGAAATCAAGAGTTGAAGTATC
ATGAGTTCTTGCAAATGTATCGGAGTCTTGAGAACCTAGCGTAGAATCGT
CTTCTTTGAAACTAGAATCAAATTGAAACTCTAAAGCATTTTCTTGATTT
GCAGTTTCAAGCTCCCTACAAAGAAACTCGTCTATAGATGGTCCTCTATT
TCGCTTCAATGGTGATTGGGACTTGACCAcaatttcatcatcagattcGT
CTAAATATTCAACCAGCAATGGCTGTATTGAAATACATGGCAATTCAATG
ATCTCCAAGTAgtcaaaattagtttttgatTTCCCTCCGCGTTCAGCTTT
AGCAATGCAATAAACATCAAGGTCGGTTTTAAGTTGAGCTAACGCGCCTT
GAACTCGGTTGATAAACTCCAAAATCTCTAATAAATCTTTTTCGGGAAGA
TCATTAAAGAATTCCTGGTTCTCAGTCTCCAGAGTATCAATAGTGTCCTC
GAAATCAGTTAACATTCGAGTCATAGCTAAAGCATCAAACGGTTGGTCAG
ACTGAATCAACAGTTCAGACTGCTCAAGTGAATTTTCTATAGTAGCCAAC
TGTGTTTCGATACCATTCAAGACTAACAGTTTCTTCATAACAATTGCATC
TTCTCTTGTNCTAAACGACTTCCCTCAAAACTCACAGCACTACCTTCAGG
AGATAGTATTGAGGTGCTCGATTCTTGGAAACTTTCAACAGTTTCAGAGC
TATATTCGGgagattgatttgaaaataacttgCGTTTGACAATATCTCGC
TCTTGAGATTTGAAATCAAGAGTTGAAGTATCATGAGTTCTTGCAAATGT
ATCGGAGTCTTGAGAATCTAGCGTGGAATCGTCTTCTTTGAAACTAGAAT
CAAATTGAAACTCTAAAGCATTTTCTTGATTTGCAGTTTCAAGCTCCCTA
CAAAGAAACTCGTCTATAGATGGTCCTCTATTTCGTTTCAATGATGATGG
GGACTTGACCAcaatttcatcatcagattcGTCTAAATATTCAACCAGCA
ATGGCTGTATTGAAATACATGGCAATTCAATGATCTCCAAGTAgtcaaaa
ttagtttttgatTTCCCTCCGCGTTCAGCTTTAGCAATGCAATAAACATC
AAGGTCGGTTTTAAGTTGAGCTAACGCGCCTTGAACTCGGTTGATAAACT
CCAAAATCTCTAATAAATCTTTTTCGGGAAGATCATTAAAGAATTCCTGG
TTCTCAGTCTCCAGAGTATCAATAGTGTCCTCGAAATCAGTTAACATTCG
AGTCATAGCTAAAGCATCAAACGGTTGGTCAGACTGAATCAACAGTTCAG
ACTGCTCAAGTGAATTTTCTATAGTAGCCAACTGTGTTTCGATACCATTC
AAGACTAACAGTTTCTTCATAACAATTGCATCTTCTCTTGTTAAGTGGTC
TTCCAAATCGTACATTCGATTCCGACAAGACTCTAAACAACCAAGCAACG
TCCTTTTCTTTTTATCAGGGAATCTCcccataaaaaaatcacaatagTTC
AACAGCTTGTTCATTTGTTCACGATGATCTTTAATTGCCGAGGATACGGT
AGACAGAACAATCTTCATGTTATAAAGACAATCAGCCTTTACCAGTTCTG
TAGTGAAGAAATATTCTGTTTGATTCAGATTCTCCAAGTAGTCCTCTGCT
TGCTTACGGCCGTCCATAAAATTGATCAACGTCGTATTCGTATCCTCACT
AAGACGTTTTAAAGACGTCAAATATTGATCCATGAGTGGTAAGTTATATC
TCACTTTCTCCTGCATTGTTCTAACGATCAACGGATAAAAATCAACATCA
ATTTTCTCCAGTAATTTTCTAGAACCGGTCAGCTCTTTTCTCAGTTGCTG
CAAACTACGAATATTTTCATCGATAGTTTTCAGCTTTTCTTGTAAATCGT
CAGTTTCGTTGTTTTCGATTTCTTGGATGCTTTGTAAAATGATTTCGAC

Run BLAST on NCBI

transcript from alignment at sc0000170:298294..302553-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00013610 ID=TCONS_00013610|Name=TCONS_00013610|organism=Clytia hemisphaerica|type=transcript|length=4260bp|location=Sequence derived from alignment at sc0000170:298294..302553- (Clytia hemisphaerica)
CTGGTTCTGCTCAAACATTTCTTCAATAGAATCTAAAGGATGTTTTAAAT
CATCCAGAAGTTCACTGACAACGTTTTGATGTTTATAAATGGCAAGCTCC
AGCAATCTGACTTTAAGTTGGATATTGATTTGACTAGCTCCTTTTTGGTC
TTCGCAGATCTCGTTGGTGATTTCATCTACTGTTTTTGCCTCTTCTTCCG
GCAATAACCTCAACGTTTGGTGATCATTCGGAGCATTTGTAATTTCTGAA
TCAATTTTTAGCTCTTCGGGAGACGACCCGGACATGGTTTGCTGGATAGA
TTCTGCATCCCTAGAATCGTCGGAAAACGGTCTCTGAACATTTTCGAGAT
CTGTAATTGTAGGCAGGCTCTCACCTGATAGCACGGAAATATTTTGCTGT
TGCTGAAGGGTTGGGGAATCTACATTCCTTGAATCACCACACGTGGATTG
TTCTGAAATCGTTTCAAGCTTTTTACTTGTTGATAATGATAAATCGTTCA
TAGAGTCACTCGAACTTGATATCAAGGGTGGAAGATCTTCACCAGAACTT
TCGGATTCACCAGAAGTATCTTTGATTACTGGAGAATCTAGATTCCTTAA
ATTTCCATTTTGTTCTTCATCTTCTTCCCTTGGAATAGTATCAGAAACTT
GAAGGTCGATCGTGGAATTAATAAAAGTTTCAGCTCCCGAAGGTGGCTCT
GATCCTTTCTGAGCGATTGGAAGTCCATCGCGAGCTTGTACTTTTTGTTG
ATTTGGTGGCGATTGAGATTTTGCTTCCTTGTCTTGTAACATGTCGACAG
TTTCTGGATCATTGAACGAGTCAGACTCTAAAGTATCCAGCGCATCTACA
GTTGGTTGTTTCTCTATCCAGGAAGACGAAGTGAAAGGTTCTTGACCAAT
TATTGGTTCTACAACCGTCTCCATATTCCCACTTGTTGCAAATGAAATAT
CATCTAGCAACTCACTTGAACTTGATATTAAAGGCGTAAGACGATCTACA
GAACTGTCAAGATTTTCTTCGGATGTTTCTGGAGTACTTGAGCTTCCTGC
TTCAGATACACTTAGTTCCATAGTCCTTTCCAATACATAATGTTCTGGAG
ATTCCCGATTCACCATGGAGAAATCATCTATAACGATCCTTTTGGATTTA
GCAGGAATTAGCTCGTTTTGATTCAAATCTGATGCATTTTCTGGTATACT
TTGATCTGAAGACTCTTGATCCATAGAATTGGTTTTGGCGGTCTCGGGGG
ATACATCTTCACAGTTTGATATAGATGTTTCGTCCATTGAAGAAGAGCTG
TCAAATACATTAAGGTCCTGTGTCAAATCTAAACGACTTCCCTCAAAACT
CACAGCACTACCTTCAGGAGATAGTATTGAGGTGCTCGATTCTTGGAAAC
TTTCAACAGTTTCAGAGCTATATTCGGGAGATTGATTTGAAAATAACTTG
CGTTTAATAGTATCTCGCTCTTGAGATTTGAAATCAAGAGTTGAAGTATC
ATGAGTTCTTGCAAATGTATCGGAGTCTTGAGAACCTAGCGTAGAATCGT
CTTCTTTGAAACTAGAATCAAATTGAAACTCTAAAGCATTTTCTTGATTT
GCAGTTTCAAGCTCCCTACAAAGAAACTCGTCTATAGATGGTCCTCTATT
TCGCTTCAATGGTGATTGGGACTTGACCACAATTTCATCATCAGATTCGT
CTAAATATTCAACCAGCAATGGCTGTATTGAAATACATGGCAATTCAATG
ATCTCCAAGTAGTCAAAATTAGTTTTTGATTTCCCTCCGCGTTCAGCTTT
AGCAATGCAATAAACATCAAGGTCGGTTTTAAGTTGAGCTAACGCGCCTT
GAACTCGGTTGATAAACTCCAAAATCTCTAATAAATCTTTTTCGGGAAGA
TCATTAAAGAATTCCTGGTTCTCAGTCTCCAGAGTATCAATAGTGTCCTC
GAAATCAGTTAACATTCGAGTCATAGCTAAAGCATCAAACGGTTGGTCAG
ACTGAATCAACAGTTCAGACTGCTCAAGTGAATTTTCTATAGTAGCCAAC
TGTGTTTCGATACCATTCAAGACTAACAGTTTCTTCATAACAATTGCATC
TTCTCTTGTNCTAAACGACTTCCCTCAAAACTCACAGCACTACCTTCAGG
AGATAGTATTGAGGTGCTCGATTCTTGGAAACTTTCAACAGTTTCAGAGC
TATATTCGGGAGATTGATTTGAAAATAACTTGCGTTTGACAATATCTCGC
TCTTGAGATTTGAAATCAAGAGTTGAAGTATCATGAGTTCTTGCAAATGT
ATCGGAGTCTTGAGAATCTAGCGTGGAATCGTCTTCTTTGAAACTAGAAT
CAAATTGAAACTCTAAAGCATTTTCTTGATTTGCAGTTTCAAGCTCCCTA
CAAAGAAACTCGTCTATAGATGGTCCTCTATTTCGTTTCAATGATGATGG
GGACTTGACCACAATTTCATCATCAGATTCGTCTAAATATTCAACCAGCA
ATGGCTGTATTGAAATACATGGCAATTCAATGATCTCCAAGTAGTCAAAA
TTAGTTTTTGATTTCCCTCCGCGTTCAGCTTTAGCAATGCAATAAACATC
AAGGTCGGTTTTAAGTTGAGCTAACGCGCCTTGAACTCGGTTGATAAACT
CCAAAATCTCTAATAAATCTTTTTCGGGAAGATCATTAAAGAATTCCTGG
TTCTCAGTCTCCAGAGTATCAATAGTGTCCTCGAAATCAGTTAACATTCG
AGTCATAGCTAAAGCATCAAACGGTTGGTCAGACTGAATCAACAGTTCAG
ACTGCTCAAGTGAATTTTCTATAGTAGCCAACTGTGTTTCGATACCATTC
AAGACTAACAGTTTCTTCATAACAATTGCATCTTCTCTTGTTAAGTGGTC
TTCCAAATCGTACATTCGATTCCGACAAGACTCTAAACAACCAAGCAACG
TCCTTTTCTTTTTATCAGGGAATCTCCCCATAAAAAAATCACAATAGTTC
AACAGCTTGTTCATTTGTTCACGATGATCTTTAATTGCCGAGGATACGGT
AGACAGAACAATCTTCATGTTATAAAGACAATCAGCCTTTACCAGTTCTG
TAGTGAAGAAATATTCTGTTTGATTCAGATTCTCCAAGTAGTCCTCTGCT
TGCNCTAGAATCAAATTGAAACTCTAAAGCATTTTCTTGATTTGCAGTTT
CAAGCTCCCTACAAAGAAACTCGTCTATAGATGGTCCTCTATTTCGCTTC
AATGGTGATTGGGACTTGACCACAATTTCATCATCAGATTCGTCTAAATA
TTCAACCAGCAATGGCTGTATTGAAATACATGGCAATTCAATGATCTCCA
AGTAGTCAAAATTAGTTTTTGATTTCCCTCCGCGTTCAGCTTTAGCAATG
CAATAAACATCAAGGTCGGTTTTAAGTTGAGCTAACGCGCCTTGAACTCG
GTTGATAAACTCCAAAATCTCTAATAAATCTTTTTCGGGAAGATCATTAA
AGAATTCCTGGTTCTCAGTCTCCAGAGTATCAATAGTGTCCTCGAAATCA
GTTAACATTCGAGTCATAGCTAAAGCATCAAACGGTTGGTCAGATTGAAT
CAACAGTTCAGACTGTTCAAGTGAATTTTCTATAGTAGCCAACTGTGTTT
CGATACCATTCAAGACTAACAGTTTCTTCATGACAATGACATCTTCTCTT
TGTAAGTGGTCTTCCAAATCGTACATTCGATTCCGACAAGACTCTAAACA
ACCAAGCAACGTCCTTTTCTTTTTATCAGGGAATCTCCCCATAAAAAAAT
CACAATAGTTCAACAGCTTGTTCATTTGTTCACGATGATCTTTAATTGCC
GAGGATACGGTAGACAGAACAATCTTCATGTTATAAAGACAATCAGCCTT
TACCAGTTCTGTAGTGAAGAAATATTCTGTTTGATTTAGATTCTCCAGGT
AGTCCTCTGCTTGCTTACGGCCGTCCATAAAATTGATCAACGTCGTATTC
GTATCCTCACTAAGACGTTTTAAAGACGTCAAATATTGATCCATGAGTGG
TAAGTTATATCTCACTTTCTCCTGCATTGTTCTAACGATCAACGGATAAA
AATCAACATCAATTTTCTCCAGTAATTTTCTAGAACCGGTCAGCTCTTTT
CTCAGTTGCTGCAAACTACGAATATTTTCATCGATAGTTTTCAGCTTTTC
TTGTAAATCGTCAGTTTCGTTGTTTTCGATTTCTTGGATGCTTTGTAAAA
TGATTTCGAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_007595	XLOC_007595	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00013610-exon-sc0000170-1575043694:299417..302553	TCONS_00013610-exon-sc0000170-1575043694:299417..302553	Clytia hemisphaerica	exon
TCONS_00013610-exon-sc0000170-1575043694:298294..298605	TCONS_00013610-exon-sc0000170-1575043694:298294..298605	Clytia hemisphaerica	exon
TCONS_00013610-exon-sc0000170-1510915933:299417..302553	TCONS_00013610-exon-sc0000170-1510915933:299417..302553	Clytia hemisphaerica	exon
TCONS_00013610-exon-sc0000170-1510915933:298294..298605	TCONS_00013610-exon-sc0000170-1510915933:298294..298605	Clytia hemisphaerica	exon
TCONS_00013610-exon-sc0000170-1491911889:299417..302553	TCONS_00013610-exon-sc0000170-1491911889:299417..302553	Clytia hemisphaerica	exon
TCONS_00013610-exon-sc0000170-1491911889:298294..298605	TCONS_00013610-exon-sc0000170-1491911889:298294..298605	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000170	supercontig	sc0000170:298294..302553 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0731694	0.0320168	0.263801	0.145737	0.0941006	0.102784	0.0241079	0.111172	0.0776562	0.0361162	0.0303636	0	0.00183875	0.0138046	0.0375823	0	0	0.0416194	0.121123	0.0444849	0	0.0149109	0.275053	0.159634	0.0249845	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00013610 vs. Swiss-Prot (Human)

BLAST of TCONS_00013610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00013610 (transcript) - C. hemisphaerica