TCONS_00013586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013586
Unique NameTCONS_00013586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013586 ID=TCONS_00013586|Name=TCONS_00013586|organism=Clytia hemisphaerica|type=transcript|length=1686bp
ttttaatagatcgtcactatttgtgttttgaatgattttttaatggtcac
gctcacgtagatatcaattatatatgtgttaaatgcataaccaggtaggt
ccataaaagtatcacttgtttatctCTTGTGGCACGGCGTGAAAGCACAA
AAGTGAAAGCTGATGGGTGCAATTGTGGTGTTGCTTACTTTATTGTGGCT
CATCAATCGAGGCAAATAACCGAAGAAAAAGTGTTCCAACTGATGTACGA
TCAAGAAGACTAGGAGCTTGACGTTAACAGATTAAAAACAAGAAGCAAGA
ACACGATGGAAAAGAATGAGTtgattttcgccaaattaaagCAAGCTGTT
AAGAACCACAAAAACAACATGATTCAAGAGGAGATGTACCGCGGAACTAC
GAATTTGTTCATTTGACGTCCTGCCAAGCTCGCATTGATAAACCGATAGA
AATGGCTTCTAAGATGCTAACAAGAAATAATTTCCACCACAAACTCAGTT
TACGAGGAcatgacgtaacggatgaacaAGTTGAAGAAGATTGCGAAGCC
CAGTCTGGAAGAACCATAAGCTGGGTGAAAGAGTTGATGGTGAAGCTGGA
TCATCGCATCTATGATGGGAGCGTCTACAGAAAAGTTAAAGAAGCAACGT
ACACATTTAAGTTTTACAAGAGTGTCGAGGCATACGTTCACCAAATGTGC
AACAATCAAGAGCGAGGTGAATTCATCATGAGAGACAAGAAAAATTTGGA
GTCTTTTATGTCCTCAAAACATATTCAGGTACTTCCCGTCATTGAGTTTG
ATTACGATTACATCGAGATTGCTTAAGGCTGGTTTTTCAAACTCTCTTCA
CGGCAGTTTGAAGAGTGCCCTTTCACTGCTGAAGACTTTGGGAAAGTTAG
CCCCAGAACATACAGCAATTTCAAAAGAGGAACCGTATGTGACGGTGGTT
TCTTTGCTAAATCAGTGCACAGCAGTTTCCCTGAGCTGAGAGAGAAGGTC
CAGTTCATGAACAGAATGTATCAGTGTATGTCACCAGAATGTCACCAGTT
TCCCCACAAAGTACCAAGATTAACAACTGTTGGTGACAACAACATTGTGG
GGTAATGTTTTGTTTGGGCTAATACATTCGTCAAAGATCGCTGTGCTAAG
CAAGGAGACAAATTTTGGAGCAAGCATGATCACGGAGCGAACCGAACTGC
TCTTTATCGATTAATTGGTCTACGAAACCATGGCGCTCGACCAGATGAAA
ACGATCCTCCAAGGTGACTACTTCTCACAGGCAGTGAAACATGAGAAGCC
AAGAATGACAAAAATGAATGCTGGCATTTACATCACCTGTCAAAAGATGC
CTCACTTGGGGATGACGAAGATGCCATGCGATGCAGGTTGGCTGATTTTC
AAACAAAGAAGTTAGTCAACAAGCAAGCAGCTGCACCGGCGTGGATCTTG
AAAAACGCGTTTGAGTGTCTGATGTGGATGCCAACGCTCGTCTACCAATT
GatgttgaagaagaagaagaagaatcgcAGAAAATTGTAAACTTCAAGCA
GAACGACTTAACGGGGATTGACCTTTGCGATGGTGATATCAACCCTATTG
TTGAAACAAGTCAAGAAGAAGCTCAAAGCCCATCATCCGTCATTGACGTC
ATTGCTTTTAGTCCAATCAGGACTCCGATCACGCCT
Run BLAST on NCBI

protein sequence of TCONS_00013586-protein

>TCONS_00013586-protein ID=TCONS_00013586-protein|Name=TCONS_00013586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MASKMLTRNNFHHKLSLRGHDVTDEQVEEDCEAQSGRTISWVKELMVKLD
HRIYDGSVYRKVKEATYTFKFYKSVEAYVHQMCNNQERGEFIMRDKKNLE
SFMSSKHIQVLPVIEFDYDYIEIA
Run BLAST on NCBI

transcript from alignment at sc0000170:14349..17041-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013586 ID=TCONS_00013586|Name=TCONS_00013586|organism=Clytia hemisphaerica|type=transcript|length=2693bp|location=Sequence derived from alignment at sc0000170:14349..17041- (Clytia hemisphaerica)
TTTTAATAGATCGTCACTATTTGTGTTTTGAATGATTTTTTAATGGTCAC
GCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGTAGGT
CCATAAAAGTATCACTTGTTTATCTCTTGTGGCACGGCGTGAAAGCACAA
AAGTGAAAGCTGATGGGTGCAATTGTGGTGTTGCTTACTTTATTGTGGCT
CATCAATCGAGGCAAATAACCGAAGAAAAAGTGTTCCAACTGATGTACGA
TCAAGAAGACTAGGAGCTTGACGTTAACAGATTAAAAACAAGAAGCAAGA
ACACGATGGAAAAGAATGAGTTGATTTTCGCCAAATTAAAGCAAGCTGTT
AAGGTAATAGTATTTATTTACGTTAAAGTGTTTCAGTTCTGAATATGATA
GTTGGTGCAGCTTTTGAATCTCGACGGGCTATCACTTTCTTTTGTAGATT
TAATAAATTGAAATACTATTTTGTGCTTTAGAACCACAAAAACAACATGA
TTCAAGAGGAGATGTACCGCGGAACTACGAATTTGTTCATTTGACGTCCT
GCCAAGCTCGCATTGATAAACCGATAGAAATGGCTTCTAAGATGCTAACA
AGAAATAATTTCCACCACAAACTCAGTTTACGAGGACATGACGTAACGGA
TGAACAAGTTGAAGAAGATTGCGAAGCCCAGTCTGGAAGAACCATAAGCT
GGGTGAAAGAGTTGATGGTGAAGCTGGATCATCGCATCTATGATGGGAGC
GTCTACAGAAAAGTTAAAGAAGGTAGATTTAAATTCATCATCCGTATCTT
GAATGCAGCCATGAACTGAAATTGTAACCTAACAAATTTTTTTTTACGAA
AAGACTTTTTCTAAAACAGCTCTTGTCTTCATTTTCACAATTCATGGATG
TCATTTCTAACCACTGACCTTTATATACCCTGGACAAAGCTTCTCAATCC
CAGCCAAGCAAAATCTTTGATCGGAGTTTTTCGAAAAGTGGTACCCTAAT
GGCGGTGTAAATGCATCGAGAGTGCTAGGTCTACTTTTTTTCAAATTCTT
TTGGCGATGTAGCGCCGTTAGACGTTAATTTTTTAACATTGCAATGGCTT
CTTCTCGGGTAACAATTGCAAAAAAACTCCAATCAAAGATGACGGATATT
GTTTGGTCCAGGGATATATAAAGGTCAGTGTTTCTAACTCCCTTATTTGT
TTTTGCTCCTTTTGTAGCAACGTACACATTTAAGTTTTACAAGAGTGTCG
AGGCATACGTTCACCAAATGTGCAACAATCAAGAGCGAGGTGAATTCATC
ATGAGAGACAAGAAAAATTTGGAGTCTTTTATGTCCTCAAAACATATTCA
GGTAAAAAATTACGTCTATTCTGCAAATTTGAAATTTCTTTTAATCAAAA
ATGTTCGTACCTAAATTTAATTTGAATAAGGTATACTAAAAAGTACAAGC
TATACTCAAAAAACCTTTTCTCTCTGTTTTCAGGTACTTCCCGTCATTGA
GTTTGATTACGATTACATCGAGATTGCTTAAGGCTGGTTTTTCAAACTCT
CTTCACGGCAGTTTGAAGAGTGCCCTTTCACTGCTGAAGACTTTGGGAAA
GTTAGCCCCAGAACATACAGCAATTTCAAAAGAGGAACCGTATGTGACGG
TGGTTTCTTTGCTAAATCAGTGCACAGCAGTTTCCCTGAGCTGAGAGAGA
AGGTCCAGTTCATGAACAGAATGTATCAGTGTATGTCACCAGAATGTCAC
CAGTTTCCCCACAAAGTACCAAGATTAACAACTGTTGGTACGTAATCATC
TTTTGCTATTTTTTTCCTTATACCCTTCGATAATTGTGACTTGAATGATT
GTATGGCCTTATATCAACAGAAATAAAAGTATGACTCGTGACCTAATATC
ATCATGTATCATCATGAATCTTTAATCTTGTCATGTTTTTTTGTTAGGTG
ACAACAACATTGTGGGGTAATGTTTTGTTTGGGCTAATACATTCGTCAAA
GATCGCTGTGCTAAGCAAGGAGACAAATTTTGGAGCAAGCATGATCACGG
AGCGAACCGAACTGCTCTTTATCGATTAATTGGTCTACGAAACCATGGCG
CTCGACCAGATGAAAACGATCCTCCAAGGTGACTACTTCTCACAGGCAGT
GAAACATGAGAAGCCAAGAATGACAAAAATGAATGCTGGCATTTACATCA
CCTGTCAAAAGATGCCTCACTTGGGGATGACGAAGATGCCATGCGATGCA
GGTTGGCTGATTTTCAAACAAAGAAGTTAGTCAACAAGCAAGCAGCTGCA
CCGGCGTGGATCTTGAAAAACGCGTTTGAGTGTCTGATGTGGATGCCAAC
GCTCGTCTACCAATTGATGTTGAAGAAGAAGAAGAAGAATCGCAGAAAAT
TGTAAACTTCAAGCAGAACGACTTAACGGGGATTGACCTTTGCGATGGTG
ATATCAACCCTATTGTTGAAACAAGTGAGTAGAATGCAATTGTTTTTTTT
AATCTGGTCTTAGATATTATGTATAGTAGAGGAAAGTTTTGTTATTCTGG
TTCTCGTTTGGTTTTCTCAAGAAATCATCATTTCTCTTTAATAATCGTAT
ACGATTTAATTTGAAGGTCAAGAAGAAGCTCAAAGCCCATCATCCGTCAT
TGACGTCATTGCTTTTAGTCCAATCAGGACTCCGATCACGCCT

Coding sequence (CDS) from alignment at sc0000170:14349..17041-

>TCONS_00013586 ID=TCONS_00013586|Name=TCONS_00013586|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0000170:14349..17041- (Clytia hemisphaerica)
GTACTTCCCGTCATTGAGTTTGATTACGATTACATCGAGATTGCTTAACA
ACGTACACATTTAAGTTTTACAAGAGTGTCGAGGCATACGTTCACCAAAT
GTGCAACAATCAAGAGCGAGGTGAATTCATCATGAGAGACAAGAAAAATT
TGGAGTCTTTTATGTCCTCAAAACATATTCAGATGGCTTCTAAGATGCTA
ACAAGAAATAATTTCCACCACAAACTCAGTTTACGAGGACATGACGTAAC
GGATGAACAAGTTGAAGAAGATTGCGAAGCCCAGTCTGGAAGAACCATAA
GCTGGGTGAAAGAGTTGATGGTGAAGCTGGATCATCGCATCTATGATGGG
AGCGTCTACAGAAAAGTTAAAGAAGGTACTTCCCGTCATTGAGTTTGATT
ACGATTACATCGAGATTGCTTAACAACGTACACATTTAAGTTTTACAAGA
GTGTCGAGGCATACGTTCACCAAATGTGCAACAATCAAGAGCGAGGTGAA
TTCATCATGAGAGACAAGAAAAATTTGGAGTCTTTTATGTCCTCAAAACA
TATTCAGATGGCTTCTAAGATGCTAACAAGAAATAATTTCCACCACAAAC
TCAGTTTACGAGGACATGACGTAACGGATGAACAAGTTGAAGAAGATTGC
GAAGCCCAGTCTGGAAGAACCATAAGCTGGGTGAAAGAGTTGATGGTGAA
GCTGGATCATCGCATCTATGATGGGAGCGTCTACAGAAAAGTTAAAGAAG
GTACTTCCCGTCATTGAGTTTGATTACGATTACATCGAGATTGCTTAACA
ACGTACACATTTAAGTTTTACAAGAGTGTCGAGGCATACGTTCACCAAAT
GTGCAACAATCAAGAGCGAGGTGAATTCATCATGAGAGACAAGAAAAATT
TGGAGTCTTTTATGTCCTCAAAACATATTCAGATGGCTTCTAAGATGCTA
ACAAGAAATAATTTCCACCACAAACTCAGTTTACGAGGACATGACGTAAC
GGATGAACAAGTTGAAGAAGATTGCGAAGCCCAGTCTGGAAGAACCATAA
GCTGGGTGAAAGAGTTGATGGTGAAGCTGGATCATCGCATCTATGATGGG
AGCGTCTACAGAAAAGTTAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007590XLOC_007590Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013586-proteinTCONS_00013586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013586-exon-sc0000170-1575043694:16689..17041TCONS_00013586-exon-sc0000170-1575043694:16689..17041Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1575043694:16270..16560TCONS_00013586-exon-sc0000170-1575043694:16270..16560Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1575043694:15691..15824TCONS_00013586-exon-sc0000170-1575043694:15691..15824Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1575043694:15255..15558TCONS_00013586-exon-sc0000170-1575043694:15255..15558Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1575043694:14568..15094TCONS_00013586-exon-sc0000170-1575043694:14568..15094Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1575043694:14349..14425TCONS_00013586-exon-sc0000170-1575043694:14349..14425Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:16689..17041TCONS_00013586-exon-sc0000170-1510915933:16689..17041Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:16270..16560TCONS_00013586-exon-sc0000170-1510915933:16270..16560Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:15691..15824TCONS_00013586-exon-sc0000170-1510915933:15691..15824Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:15255..15558TCONS_00013586-exon-sc0000170-1510915933:15255..15558Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:14568..15094TCONS_00013586-exon-sc0000170-1510915933:14568..15094Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1510915933:14349..14425TCONS_00013586-exon-sc0000170-1510915933:14349..14425Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:16689..17041TCONS_00013586-exon-sc0000170-1491911889:16689..17041Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:16270..16560TCONS_00013586-exon-sc0000170-1491911889:16270..16560Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:15691..15824TCONS_00013586-exon-sc0000170-1491911889:15691..15824Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:15255..15558TCONS_00013586-exon-sc0000170-1491911889:15255..15558Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:14568..15094TCONS_00013586-exon-sc0000170-1491911889:14568..15094Clytia hemisphaericaexon
TCONS_00013586-exon-sc0000170-1491911889:14349..14425TCONS_00013586-exon-sc0000170-1491911889:14349..14425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:14349..17041 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.050483	0.122949	0.361224	0.367816	0.153553	0.256034	0.0619458	0.0579247	0.0616233	0.101315	0.138621	0.196264	0.190182	0.284993	0.274171	0.14223	0.0365319	0.147963	0	0.0273764	0.312011	0.215026	0.0951589	0.0285111	0.129824	0.12326	0.0556943	0.0747052	0.22317	0.225148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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