TCONS_00013571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013571
Unique NameTCONS_00013571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013571 ID=TCONS_00013571|Name=TCONS_00013571|organism=Clytia hemisphaerica|type=transcript|length=505bp
TCTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAAAGCGAACACGC
TGCAGGAAATGAGTAACAACCTTGATCAAATTCagCATTTAATGGATGAA
ATGGACAATAGTGACACGATTATCCTTCAAGTCTACACTAAAGGAGAGGA
AATCCTTCAAAAATATGACGATGCAAATGGCTTACAGAAATCCGTCTCAC
AGCAACTAGAAGTCATGGAAAAAGACTGGGCCTCGTTTTGTACCCAAACA
TCCGAGCATAGACAAGTCATAGACGATTGTGTATCTCAATGGGTAGATTT
TGAAAACAGTTTCCAAAGTTTAAGCACGCTTCTCAAAGAATTCTCAACTA
TTCTGGATCAAGATGCTAATGACAAAATTGACCATGGAAGTGTAGAACAT
TCTATCAACCGATATGAGAACATCATCAAGAGTATTCAAAAGAAGAAGCC
TCGTTTCCGACAATTACAACAAATGTATCAACGTATCAAACCACATATCG
CTGAC
Run BLAST on NCBI

protein sequence of TCONS_00013571-protein

>TCONS_00013571-protein ID=TCONS_00013571-protein|Name=TCONS_00013571-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
LAKKEFENCRVFKANTLQEMSNNLDQIQHLMDEMDNSDTIILQVYTKGEE
ILQKYDDANGLQKSVSQQLEVMEKDWASFCTQTSEHRQVIDDCVSQWVDF
ENSFQSLSTLLKEFSTILDQDANDKIDHGSVEHSINRYENIIKSIQKKKP
RFRQLQQMYQRIKPHIAD
Run BLAST on NCBI

transcript from alignment at sc0000170:288565..291915+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013571 ID=TCONS_00013571|Name=TCONS_00013571|organism=Clytia hemisphaerica|type=transcript|length=3351bp|location=Sequence derived from alignment at sc0000170:288565..291915+ (Clytia hemisphaerica)
TCTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAAAGCGAACACGC
TGCAGGAAATGAGTAACAACCTTGATCAAATTCaggtaatttttgttatt
tactATTGTTTTCTATTTGGTACATTGAGATCTTCAAATGCCGACATGCT
TGGGTTCTTCTAATAGATGAATATATGAGGGCTCGAAGGGCATGACGATT
CGTAAGTTTTAAACAATAACCTTTATGTAcgtaccctggaccaagtttat
caatctcGTCCTAGCAAAACCTTTAATCGGAGTTtttaccctaatggtag
cactccTCAATAGCGGTTGAGATGCGCGAgtgcgctagatctactttatC
TTGAATAATTTTGCTgatgttaatttttaacactacaatggcttctttgc
gggtaccactcTCAAAAAAAACTCAGATCAAAGTTGGCCGacatagcttg
gtccagggtatataaaggtcagtgtttgaaacttaacaaaaaaaaacaat
taaatttgCCAATATTTCACGCCAGCATATAAACTACTGACAAATTATAT
GGTATGTCAAATTATTTCCCTGCAGCATTTAATGGATGAAATGGACAATA
GTGACACGATTATCCTTCAAGTCTACACTAAAGGAGAGGAAATCCTTCAA
AAATATGACGATGCAAATGGCTTACAGGTAAACTGAATGTCTTTAAGAAT
AATGCTTTGTTAGGCTCAATGTAATAACCGCTAGTTCTCATTACTGAAGT
ATTGTGAGGTCGGTCAACAGATATCTTAtttaaaacactagatagagcta
ctctgtaatTCCTAAGCAACGGtagttgaagcaaaataatctgccatctt
tgctgaaagtagaccATAGTAGGTACCGGAAATTTGATGAACCAACCAAA
AAAAACTGAATGACGCGAAGAGACGAGGCAAGAAAATTGACTTTATCAAT
CAATTACCGGCACCGAACAACTATGGTCTACTATAGTCTAAGATGGTGGA
TTATTTAGCTTCAACTAGGGAGGGAGTAGATCTATTTAGTTTTTATATAA
GATGGGTGTAACCCTTTATCACGATTAGCATATTTTAGAATTTGTGTCAG
AGATGAATACAGTATTCTACATTTGAGAATGCCTATAATTTTTCCTTTCA
AGCCAAATCCGGtgtaactttataagaataattatgaaaatatgaATACT
ATTCTCCTCGTTCCTCTTACAGAAATCCGTCTCACAGCAACTAGAAGTCA
TGGAAAAAGACTGGGCCTCGTTTTGTACCCAAACATCCGAGCATAGACAA
GTCATAGACGATTGTGTATCTCAATGGGTAGATTTTGAAAACAGTTTCCA
AAGTTTAAGCACGCTTCTCAAAGAATTCTCAACTATTCTGGATCAAGATG
CTAATGACAAAATTGACCATGGAAGTGTAGAACATTCTATCAACCGATAT
GAGGTATACTGTCTTTCACTATTGGGCTTTTCTGGAAATTTTCCGTatcc
cctgttgaggatatacATTTTTGAGGTCTGTGGAGCCTGGATATCCGACC
TGAAAAAATCGACCCCTGAATGTCCAAGTGGATAGAGTGAATAGAAGGGT
TGAGGATATCCATGCATTTTGTCTTGTACTCTCTGGATATCCATGCATTC
TGTCTTGTACCCTCTGAATATCCATGCATTTTGTCttgtaccccctggat
atccatgcATTTTGTCTTGTACCCTCTGGATATCCATGCATTTTGTCttg
taccccctggatatcgaTGCATTCTGTCTTGTACTCCCTCTGGATATCCA
TGCATTCTGTCttgtaccccctggatatccagacatTCTGTCTTGTACCC
TCTGGATATCCATGCATTTTGTCCTGTACTCTCTGGATATCCAGACATTT
TGTCttgtaccccctggatatccatgcATTTTGTCttgtaccccctggat
atccatgcATTTTGTCCTGTACTCTCTGGATATCCAGACATTTTGTCttg
taccccctggatatccatgcATTTTGTCttgtaccccctggatatccaga
catTCTGTCTTGTActccctggatatccagacatTCTGTCctgtaccccc
tggatatccagacatTTTGTCttgtaccccctggatatccatgcATTTTG
TCttgtaccccctggatatccagacatTCTGTCTTGTActccctggatat
ccagacatTCTGTCttgtaccccctggatatccatgcATTTTGTCTTGTA
CCCTCTCGATGTCCAGACATTCTGTCttgtaccccctggatatccatgcA
TTTTGTCTTGTACCCCCTGGATGTCCAGACATTCTGTCttgtaccccctg
gatatccatgcATTTTGTCTTGTACCCCCTCGATGTCCAGACATTCTGTC
ttgtaccccctggatatcctctcccTCTTATAAGGACCTACCCCGTGGAT
ATCCAAATATCATTAGACTCCCtagatatccgatatcctcaacagggggg
caTGGACTAAATTCTGGAGAAGCCCATTTCATCTTATGTTATTCTTAGGC
TTGTCTTCTTAATTAGTGGTCGACACCTTTCACGACTTTAAAAACCAATG
TTTCTTTGGCACAAGAGGTCATTTCTCCGTAGAACTTTCGATAGCGATTG
TAACAAAGCTTTTACTTGGactcaaaacaaaactttttaacaCCTTTTCA
ATTTACAATTGTTTCCCTTCATTAACTTCCCCCTTTTCCCTCATCTTTTC
AAATCGCCTACATTTTCCTACGACGCACATGTCATTCTTTGATACAGCTT
CTTATCTTGATCAGTCTGAGATgtgctttataagaacaatcttcatattc
tttaaaacatccattttttttcatgttttgttttcagGGATTTTTCTTGA
TTTAGTCAGACTGGCCAAAGTTCGCGTCTGGAGAATTCTTGCAAAGCTAT
GTTCAGGCCTGCGTGCTCATTTAAGTgcacatttttataagaacaaacta
tataaactCTGAGCTTGGAAGCCAAGAATATTAAGACTCTAAAGGACCCA
TTTCTATATTCCATGggaaaaatcaccaaaaatgctcacaaaatggtgaa
aatgtttaaaacatttttagggattaaaactgaaaaaaattaagaacatc
cgaagtcttcgaaaattttggacgtTCTTGTAAAAGGAATGGTTAATTAA
AATAAGTTAAACTATCTTCTCTTCTTggacaaaaattgaagattCTTGTA
TTACTGTCTTTCAGAACATCATCAAGAGTATTCAAAAGAAGAAGCCTCGT
TTCCGACAATTACAACAAATGTATCAACGTATCAAACCACATATCGCTGA
C

Coding sequence (CDS) from alignment at sc0000170:288565..291915+

>TCONS_00013571 ID=TCONS_00013571|Name=TCONS_00013571|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000170:288565..291915+ (Clytia hemisphaerica)
CTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAAAGCGAACACGCT
GCAGGAAATGAGTAACAACCTTGATCAAATTCagCATTTAATGGATGAAA
TGGACAATAGTGACACGATTATCCTTCAAGTCTACACTAAAGGAGAGGAA
ATCCTTCAAAAATATGACGATGCAAATGGCTTACAGAAATCCGTCTCACA
GCAACTAGAAGTCATGGAAAAAGACTGGGCCTCGTTTTGTACCCAAACAT
CCGAGCATAGACAAGTCATAGACGATTGTGTATCTCAATGGGTAGATTTT
GAAAACAGTTTCCAAAGTTTAAGCACGCTTCTCAAAGAATTCTCAACTAT
TCTGGATCAAGATGCTAATGACAAAATTGACCATGGAAGTGTAGAACATT
CTATCAACCGATATGAGAACATCATCAAGAGTATTCAAAAGAAGAAGCCT
CGTTTCCGACAATTACAACAAATGTATCAACGTATCAAACCACATATCGC
TGACCTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAAAGCGAACA
CGCTGCAGGAAATGAGTAACAACCTTGATCAAATTCagCATTTAATGGAT
GAAATGGACAATAGTGACACGATTATCCTTCAAGTCTACACTAAAGGAGA
GGAAATCCTTCAAAAATATGACGATGCAAATGGCTTACAGAAATCCGTCT
CACAGCAACTAGAAGTCATGGAAAAAGACTGGGCCTCGTTTTGTACCCAA
ACATCCGAGCATAGACAAGTCATAGACGATTGTGTATCTCAATGGGTAGA
TTTTGAAAACAGTTTCCAAAGTTTAAGCACGCTTCTCAAAGAATTCTCAA
CTATTCTGGATCAAGATGCTAATGACAAAATTGACCATGGAAGTGTAGAA
CATTCTATCAACCGATATGAGAACATCATCAAGAGTATTCAAAAGAAGAA
GCCTCGTTTCCGACAATTACAACAAATGTATCAACGTATCAAACCACATA
TCGCTGACCTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAAAGCG
AACACGCTGCAGGAAATGAGTAACAACCTTGATCAAATTCagCATTTAAT
GGATGAAATGGACAATAGTGACACGATTATCCTTCAAGTCTACACTAAAG
GAGAGGAAATCCTTCAAAAATATGACGATGCAAATGGCTTACAGAAATCC
GTCTCACAGCAACTAGAAGTCATGGAAAAAGACTGGGCCTCGTTTTGTAC
CCAAACATCCGAGCATAGACAAGTCATAGACGATTGTGTATCTCAATGGG
TAGATTTTGAAAACAGTTTCCAAAGTTTAAGCACGCTTCTCAAAGAATTC
TCAACTATTCTGGATCAAGATGCTAATGACAAAATTGACCATGGAAGTGT
AGAACATTCTATCAACCGATATGAGAACATCATCAAGAGTATTCAAAAGA
AGAAGCCTCGTTTCCGACAATTACAACAAATGTATCAACGTATCAAACCA
CATATCGCTGACCTCGCCAAGAAAGAGTTTGAGAATTGTCGCGTGTTCAA
AGCGAACACGCTGCAGGAAATGAGTAACAACCTTGATCAAATTCagCATT
TAATGGATGAAATGGACAATAGTGACACGATTATCCTTCAAGTCTACACT
AAAGGAGAGGAAATCCTTCAAAAATATGACGATGCAAATGGCTTACAGAA
ATCCGTCTCACAGCAACTAGAAGTCATGGAAAAAGACTGGGCCTCGTTTT
GTACCCAAACATCCGAGCATAGACAAGTCATAGACGATTGTGTATCTCAA
TGGGTAGATTTTGAAAACAGTTTCCAAAGTTTAAGCACGCTTCTCAAAGA
ATTCTCAACTATTCTGGATCAAGATGCTAATGACAAAATTGACCATGGAA
GTGTAGAACATTCTATCAACCGATATGAGAACATCATCAAGAGTATTCAA
AAGAAGAAGCCTCGTTTCCGACAATTACAACAAATGTATCAACGTATCAA
ACCACATATCGCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007582XLOC_007582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013571-exon-sc0000170-1491911889:288565..288649TCONS_00013571-exon-sc0000170-1491911889:288565..288649Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1510915933:288565..288649TCONS_00013571-exon-sc0000170-1510915933:288565..288649Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1575043694:288565..288649TCONS_00013571-exon-sc0000170-1575043694:288565..288649Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1491911889:289140..289241TCONS_00013571-exon-sc0000170-1491911889:289140..289241Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1510915933:289140..289241TCONS_00013571-exon-sc0000170-1510915933:289140..289241Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1575043694:289140..289241TCONS_00013571-exon-sc0000170-1575043694:289140..289241Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1491911889:289787..290017TCONS_00013571-exon-sc0000170-1491911889:289787..290017Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1510915933:289787..290017TCONS_00013571-exon-sc0000170-1510915933:289787..290017Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1575043694:289787..290017TCONS_00013571-exon-sc0000170-1575043694:289787..290017Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1491911889:291829..291915TCONS_00013571-exon-sc0000170-1491911889:291829..291915Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1510915933:291829..291915TCONS_00013571-exon-sc0000170-1510915933:291829..291915Clytia hemisphaericaexon
TCONS_00013571-exon-sc0000170-1575043694:291829..291915TCONS_00013571-exon-sc0000170-1575043694:291829..291915Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013571-proteinTCONS_00013571-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000170supercontigsc0000170:288565..291915 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.646537	0.255451	0	0.144262	0	0	0	0	0.159427	0	0	0	0	0	0	0	0	0.169574	0	0	0.386056	0.459395	0.328696	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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