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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013570 ID=TCONS_00013570|Name=TCONS_00013570|organism=Clytia hemisphaerica|type=transcript|length=1592bp
gGAGAAAAGATCAATTCTTGAAGACTTGCAATCTGAACTCTTAAACGAAA
AACCATCTGACATGACCACACAACATTACCAAGATCTTTGCCAAGAAGTC
GACCAAACCATTACAGAGTTGAATGAGGATTCGAAGAATTTGAAGGTCGT
TCATGAGGGATTGAGTGAGATTGAACAAGCCAAAGATGAGATTTCCACAT
GGTGCATTGATGTGATGAATGAAGAAGACCAATGTGGTGTTGATTTGAAG
AGTGAATTGGAAAAGAAACTTTCTCTTCTTTCCACGTGCAACGACCGTGC
ATCGGAACTCATGAAGTCGTACGGTCTTCTCAACCAATCACTGATCGTTA
AACCGCTGACCGAAATCAAAGAAGACATTTGCCAAGTAATGGAGATTGTA
GAAGATCCTATGTGTAGTTCTCAGGTTTTAGATGATACAGAAGAATTGTT
GGATAGTTTTGCAGCTCAATATTCACAAACTGACTCTCAACAAGAATCAC
CAAGTATCGATTCCACTCTTGATAAAGAGgtATCAGTGTCTGTTGCCAGT
AGCCAAGTCACAGAAAATGTGACAGATCCAAGTTACGTGGTTTCCTTGGA
GAATTCACCTTATTTGTTAGATGAAGAGACACTGACATCAATGACCAATC
CAACACAATCTGGCGATCTCCTCCAAGACGAAGATCGTTTTTATGCTGTA
GGATCAGCCGGTTCTTTAGAAGATGTTTGCAGTTTGGTCTCTGAGGACTT
CGATGGAAGGAGTGAATCGATGGATATTAATTATGTGGACGATTTAGATT
CGGTTGCTACTGATGATAATACTAGCAAACTCCCCACTCACCACTCCATT
ACTACTGAAGACTTGGTGTCCTCGGCATCCAGTCTGCCGCCCTTAGAATC
AACAGCTGAAAGTGGAGTATCTGCATCAGTGGAGCAAGGTGATGAAAACA
GCTCTGGCAACACGTGTGATGAAGTTGACAATGCTTCGTTTATGGAGAGT
ACTTCAAGTCAGAACGTAGAAGATTCTTTTAGAGATGAGCTCTCATTTGA
TCAAGATACTGGTGCAACACATTCTGTTGTTGACAGCGATTCCTTTGTTG
AAGAGACTTCTCAAAATACAAGTAGCATTGCAGAAGTATCAAACGATAAT
AAtgatgtttcttataaaaaagaacattCAGCTAATTCCCTCTCTGAGCC
GCTCTCTGAAAAGGTGAGCAGTGATACATCTTGCTCAGATATTGAAAAGC
AAAATTCCTCACAACCACCTTTTGGATTAGCAACCAACTGGAAGAATCCT
GCTACACAGTCTTGTTCTGTGTCAGAGGAATACCTTTCAGGAgccaatga
aaatgaagaagcgACTTCAAGGACCAATGACCATGAAGGATTAACACCAC
GTGACTTCAATACACCAATCCCAACGATCCGTATCGAGAACACAGACGGG
AACGATAATGAATCCACCATGTTGTCGATTGATGGTGAAAATGTCTTTGT
GATTGGTTTAGAGCAAGAATTAGATTCCGTGATGAAAGAAGAAGACAATG
GAATGGAGGGTTTGCAAACCAAACTGACCAAGATCCAggtat Run BLAST on NCBI protein sequence of TCONS_00013570-protein >TCONS_00013570-protein ID=TCONS_00013570-protein|Name=TCONS_00013570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=530bp
EKRSILEDLQSELLNEKPSDMTTQHYQDLCQEVDQTITELNEDSKNLKVV
HEGLSEIEQAKDEISTWCIDVMNEEDQCGVDLKSELEKKLSLLSTCNDRA
SELMKSYGLLNQSLIVKPLTEIKEDICQVMEIVEDPMCSSQVLDDTEELL
DSFAAQYSQTDSQQESPSIDSTLDKEVSVSVASSQVTENVTDPSYVVSLE
NSPYLLDEETLTSMTNPTQSGDLLQDEDRFYAVGSAGSLEDVCSLVSEDF
DGRSESMDINYVDDLDSVATDDNTSKLPTHHSITTEDLVSSASSLPPLES
TAESGVSASVEQGDENSSGNTCDEVDNASFMESTSSQNVEDSFRDELSFD
QDTGATHSVVDSDSFVEETSQNTSSIAEVSNDNNDVSYKKEHSANSLSEP
LSEKVSSDTSCSDIEKQNSSQPPFGLATNWKNPATQSCSVSEEYLSGANE
NEEATSRTNDHEGLTPRDFNTPIPTIRIENTDGNDNESTMLSIDGENVFV
IGLEQELDSVMKEEDNGMEGLQTKLTKIQV Run BLAST on NCBI transcript from alignment at sc0000170:284125..286760+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013570 ID=TCONS_00013570|Name=TCONS_00013570|organism=Clytia hemisphaerica|type=transcript|length=2636bp|location=Sequence derived from alignment at sc0000170:284125..286760+ (Clytia hemisphaerica)
gGAGAAAAGATCAATTCTTGAAGACTTGCAATCTGAACTCTTAAACGAAA
AACCATCTGACATGACCACACAACATTACCAAGATCTTTGCCAAGAAGTC
GACCAAACCATTACAGAGTTGAATGAGGATTCGAAGAATTTGAAGGTCGT
TCATGAGGGATTGAGTGAGATTGAACAAGCCAAAGATGAGATTTCCACAT
GGTGCATTGATGTGATGAATGAAGAAGACCAATGTGGTGTTGATTTGAAG
GTAAGTGACACTAGCTTAAAGGAAAAACATTTGGCTACATAGAGCATAAT
TGTTAGTTAAACCTTAAGCCGGAACTCACCAAAGTTCCTTTTGCTTAATG
TTTTCATAGTGTTGCAACTTTTCCATCTGTAGATGGAAATCGGCCTAGTT
GAGATTCTTTACTAGGATTTTCGTCCTAGTTtatgaagaatttcttctta
aaatctattaaaacccaAACGTTTTAAGAGCATTCGAAGCCTCAATCACt
ttctgatgttcttataacaaaacgtATTATATTTTGCTTCCAGAGTGAAT
TGGAAAAGAAACTTTCTCTTCTTTCCACGTGCAACGACCGTGCATCGGAA
CTCATGAAGTCGTACGGTCTTCTCAACCAATCACTGATCGTTAAACCGCT
GACCGAAATCAAAGAAGACATTTGCCAAGTAATGGAGATTGTAGAAGATC
CTATGTGTAGTTCTCAGGTTTTAGATGATACAGAAGAATTGTTGGATAGT
TTTGCAGCTCAATATTCACAAACTGACTCTCAACAAGAATCACCAAGTAT
CGATTCCACTCTTGATAAAGAGGTAAAATCCAGTTAAATTCCTAAAAGTA
GTGTATCATCGGTGAATAAATTGATAATTCTCTACAAGCAAGGATTAGAA
CTTTTAATTGTCACTGGTTTAGAAATGAAGTCTAATATTAAAATCCAtgc
agggggtggacgaactaaaatcagtttttactttttactttaccCCTCCC
CCCCTGGAAAAATAATTCTTCTTCGAATCatcctctggaaatgttcgttc
ACCCCTTGTATGGAgataaaatggaatagcccattagcTAGCGATgtttt
attaaaagtttttcttttgacttgACTGGCTTCTCTTCACAGAGGATGAT
TGATACAGTAAACGAGTCTATCAGCTTTTATCTACCGTGAAGTACTAGCC
CACTCAAACCTCATCTTCTTCTAGATTATTTTAACTTTATCTCCGGAGGG
gaaacttaggcaaaaataggcgATGGGTGTGTGCGGACAGTAAGGGTCGG
TTTAATTAACCTTCCCAAGTCTCGTTAAGAAACTACGAAAACAACAAAAG
GTCGGAATAATATCTTCAAGGCTAGGAAATTAAGAGTCACTTTTTCGCCA
ATTTTTTCATTCTAAAAAGGGTAACCTTTTGGCTAAAATTAAGTCTCTTT
AAAGGTCGGCTTTAGGAGATCCGGTCCGAACAAGCCCGACATTCTCCAAG
CTTAGGACTTTAGCTAAATAAATTTTCGATGCAAGGTTAAAGAGAAGCAT
TatctcaatttctttttcttcaggtATCAGTGTCTGTTGCCAGTAGCCAA
GTCACAGAAAATGTGACAGATCCAAGTTACGTGGTTTCCTTGGAGAATTC
ACCTTATTTGTTAGATGAAGAGACACTGACATCAATGACCAATCCAACAC
AATCTGGCGATCTCCTCCAAGACGAAGATCGTTTTTATGCTGTAGGATCA
GCCGGTTCTTTAGAAGATGTTTGCAGTTTGGTCTCTGAGGACTTCGATGG
AAGGAGTGAATCGATGGATATTAATTATGTGGACGATTTAGATTCGGTTG
CTACTGATGATAATACTAGCAAACTCCCCACTCACCACTCCATTACTACT
GAAGACTTGGTGTCCTCGGCATCCAGTCTGCCGCCCTTAGAATCAACAGC
TGAAAGTGGAGTATCTGCATCAGTGGAGCAAGGTGATGAAAACAGCTCTG
GCAACACGTGTGATGAAGTTGACAATGCTTCGTTTATGGAGAGTACTTCA
AGTCAGAACGTAGAAGATTCTTTTAGAGATGAGCTCTCATTTGATCAAGA
TACTGGTGCAACACATTCTGTTGTTGACAGCGATTCCTTTGTTGAAGAGA
CTTCTCAAAATACAAGTAGCATTGCAGAAGTATCAAACGATAATAAtgat
gtttcttataaaaaagaacattCAGCTAATTCCCTCTCTGAGCCGCTCTC
TGAAAAGGTGAGCAGTGATACATCTTGCTCAGATATTGAAAAGCAAAATT
CCTCACAACCACCTTTTGGATTAGCAACCAACTGGAAGAATCCTGCTACA
CAGTCTTGTTCTGTGTCAGAGGAATACCTTTCAGGAgccaatgaaaatga
agaagcgACTTCAAGGACCAATGACCATGAAGGATTAACACCACGTGACT
TCAATACACCAATCCCAACGATCCGTATCGAGAACACAGACGGGAACGAT
AATGAATCCACCATGTTGTCGATTGATGGTGAAAATGTCTTTGTGATTGG
TTTAGAGCAAGAATTAGATTCCGTGATGAAAGAAGAAGACAATGGAATGG
AGGGTTTGCAAACCAAACTGACCAAGATCCAggtat Coding sequence (CDS) from alignment at sc0000170:284125..286760+ >TCONS_00013570 ID=TCONS_00013570|Name=TCONS_00013570|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000170:284125..286760+ (Clytia hemisphaerica)
GAGAAAAGATCAATTCTTGAAGACTTGCAATCTGAACTCTTAAACGAAAA
ACCATCTGACATGACCACACAACATTACCAAGATCTTTGCCAAGAAGTCG
ACCAAACCATTACAGAGTTGAATGAGGATTCGAAGAATTTGAAGGTCGTT
CATGAGGGATTGAGTGAGATTGAACAAGCCAAAGATGAGATTTCCACATG
GTGCATTGATGTGATGAATGAAGAAGACCAATGTGGTGTTGATTTGAAGA
GTGAATTGGAAAAGAAACTTTCTCTTCTTTCCACGTGCAACGACCGTGCA
TCGGAACTCATGAAGTCGTACGGTCTTCTCAACCAATCACTGATCGTTAA
ACCGCTGACCGAAATCAAAGAAGACATTTGCCAAGTAATGGAGATTGTAG
AAGATCCTATGTGTAGTTCTCAGGTTTTAGATGATACAGAAGAATTGTTG
GATAGTTTTGCAGCTCAATATTCACAAACTGACTCTCAACAAGAATCACC
AAGTATCGATTCCACTCTTGATAAAGAGgtATCAGTGTCTGTTGCCAGTA
GCCAAGTCACAGAAAATGTGACAGATCCAAGTTACGTGGTTTCCTTGGAG
AATTCACCTTATTTGTTAGATGAAGAGACACTGACATCAATGACCAATCC
AACACAATCTGGCGATCTCCTCCAAGACGAAGATCGTTTTTATGCTGTAG
GATCAGCCGGTTCTTTAGAAGATGTTTGCAGTTTGGTCTCTGAGGACTTC
GATGGAAGGAGTGAATCGATGGATATTAATTATGTGGACGATTTAGATTC
GGTTGCTACTGATGATAATACTAGCAAACTCCCCACTCACCACTCCATTA
CTACTGAAGACTTGGTGTCCTCGGCATCCAGTCTGCCGCCCTTAGAATCA
ACAGCTGAAAGTGGAGTATCTGCATCAGTGGAGCAAGGTGATGAAAACAG
CTCTGGCAACACGTGTGATGAAGTTGACAATGCTTCGTTTATGGAGAGTA
CTTCAAGTCAGAACGTAGAAGATTCTTTTAGAGATGAGCTCTCATTTGAT
CAAGATACTGGTGCAACACATTCTGTTGTTGACAGCGATTCCTTTGTTGA
AGAGACTTCTCAAAATACAAGTAGCATTGCAGAAGTATCAAACGATAATA
AtgatgtttcttataaaaaagaacattCAGCTAATTCCCTCTCTGAGCCG
CTCTCTGAAAAGGTGAGCAGTGATACATCTTGCTCAGATATTGAAAAGCA
AAATTCCTCACAACCACCTTTTGGATTAGCAACCAACTGGAAGAATCCTG
CTACACAGTCTTGTTCTGTGTCAGAGGAATACCTTTCAGGAgccaatgaa
aatgaagaagcgACTTCAAGGACCAATGACCATGAAGGATTAACACCACG
TGACTTCAATACACCAATCCCAACGATCCGTATCGAGAACACAGACGGGA
ACGATAATGAATCCACCATGTTGTCGATTGATGGTGAAAATGTCTTTGTG
ATTGGTTTAGAGCAAGAATTAGATTCCGTGATGAAAGAAGAAGACAATGG
AATGGAGGGTTTGCAAACCAAACTGACCAAGATCCAggtaGAGAAAAGAT
CAATTCTTGAAGACTTGCAATCTGAACTCTTAAACGAAAAACCATCTGAC
ATGACCACACAACATTACCAAGATCTTTGCCAAGAAGTCGACCAAACCAT
TACAGAGTTGAATGAGGATTCGAAGAATTTGAAGGTCGTTCATGAGGGAT
TGAGTGAGATTGAACAAGCCAAAGATGAGATTTCCACATGGTGCATTGAT
GTGATGAATGAAGAAGACCAATGTGGTGTTGATTTGAAGAGTGAATTGGA
AAAGAAACTTTCTCTTCTTTCCACGTGCAACGACCGTGCATCGGAACTCA
TGAAGTCGTACGGTCTTCTCAACCAATCACTGATCGTTAAACCGCTGACC
GAAATCAAAGAAGACATTTGCCAAGTAATGGAGATTGTAGAAGATCCTAT
GTGTAGTTCTCAGGTTTTAGATGATACAGAAGAATTGTTGGATAGTTTTG
CAGCTCAATATTCACAAACTGACTCTCAACAAGAATCACCAAGTATCGAT
TCCACTCTTGATAAAGAGgtATCAGTGTCTGTTGCCAGTAGCCAAGTCAC
AGAAAATGTGACAGATCCAAGTTACGTGGTTTCCTTGGAGAATTCACCTT
ATTTGTTAGATGAAGAGACACTGACATCAATGACCAATCCAACACAATCT
GGCGATCTCCTCCAAGACGAAGATCGTTTTTATGCTGTAGGATCAGCCGG
TTCTTTAGAAGATGTTTGCAGTTTGGTCTCTGAGGACTTCGATGGAAGGA
GTGAATCGATGGATATTAATTATGTGGACGATTTAGATTCGGTTGCTACT
GATGATAATACTAGCAAACTCCCCACTCACCACTCCATTACTACTGAAGA
CTTGGTGTCCTCGGCATCCAGTCTGCCGCCCTTAGAATCAACAGCTGAAA
GTGGAGTATCTGCATCAGTGGAGCAAGGTGATGAAAACAGCTCTGGCAAC
ACGTGTGATGAAGTTGACAATGCTTCGTTTATGGAGAGTACTTCAAGTCA
GAACGTAGAAGATTCTTTTAGAGATGAGCTCTCATTTGATCAAGATACTG
GTGCAACACATTCTGTTGTTGACAGCGATTCCTTTGTTGAAGAGACTTCT
CAAAATACAAGTAGCATTGCAGAAGTATCAAACGATAATAAtgatgtttc
ttataaaaaagaacattCAGCTAATTCCCTCTCTGAGCCGCTCTCTGAAA
AGGTGAGCAGTGATACATCTTGCTCAGATATTGAAAAGCAAAATTCCTCA
CAACCACCTTTTGGATTAGCAACCAACTGGAAGAATCCTGCTACACAGTC
TTGTTCTGTGTCAGAGGAATACCTTTCAGGAgccaatgaaaatgaagaag
cgACTTCAAGGACCAATGACCATGAAGGATTAACACCACGTGACTTCAAT
ACACCAATCCCAACGATCCGTATCGAGAACACAGACGGGAACGATAATGA
ATCCACCATGTTGTCGATTGATGGTGAAAATGTCTTTGTGATTGGTTTAG
AGCAAGAATTAGATTCCGTGATGAAAGAAGAAGACAATGGAATGGAGGGT
TTGCAAACCAAACTGACCAAGATCCAggtaGAGAAAAGATCAATTCTTGA
AGACTTGCAATCTGAACTCTTAAACGAAAAACCATCTGACATGACCACAC
AACATTACCAAGATCTTTGCCAAGAAGTCGACCAAACCATTACAGAGTTG
AATGAGGATTCGAAGAATTTGAAGGTCGTTCATGAGGGATTGAGTGAGAT
TGAACAAGCCAAAGATGAGATTTCCACATGGTGCATTGATGTGATGAATG
AAGAAGACCAATGTGGTGTTGATTTGAAGAGTGAATTGGAAAAGAAACTT
TCTCTTCTTTCCACGTGCAACGACCGTGCATCGGAACTCATGAAGTCGTA
CGGTCTTCTCAACCAATCACTGATCGTTAAACCGCTGACCGAAATCAAAG
AAGACATTTGCCAAGTAATGGAGATTGTAGAAGATCCTATGTGTAGTTCT
CAGGTTTTAGATGATACAGAAGAATTGTTGGATAGTTTTGCAGCTCAATA
TTCACAAACTGACTCTCAACAAGAATCACCAAGTATCGATTCCACTCTTG
ATAAAGAGgtATCAGTGTCTGTTGCCAGTAGCCAAGTCACAGAAAATGTG
ACAGATCCAAGTTACGTGGTTTCCTTGGAGAATTCACCTTATTTGTTAGA
TGAAGAGACACTGACATCAATGACCAATCCAACACAATCTGGCGATCTCC
TCCAAGACGAAGATCGTTTTTATGCTGTAGGATCAGCCGGTTCTTTAGAA
GATGTTTGCAGTTTGGTCTCTGAGGACTTCGATGGAAGGAGTGAATCGAT
GGATATTAATTATGTGGACGATTTAGATTCGGTTGCTACTGATGATAATA
CTAGCAAACTCCCCACTCACCACTCCATTACTACTGAAGACTTGGTGTCC
TCGGCATCCAGTCTGCCGCCCTTAGAATCAACAGCTGAAAGTGGAGTATC
TGCATCAGTGGAGCAAGGTGATGAAAACAGCTCTGGCAACACGTGTGATG
AAGTTGACAATGCTTCGTTTATGGAGAGTACTTCAAGTCAGAACGTAGAA
GATTCTTTTAGAGATGAGCTCTCATTTGATCAAGATACTGGTGCAACACA
TTCTGTTGTTGACAGCGATTCCTTTGTTGAAGAGACTTCTCAAAATACAA
GTAGCATTGCAGAAGTATCAAACGATAATAAtgatgtttcttataaaaaa
gaacattCAGCTAATTCCCTCTCTGAGCCGCTCTCTGAAAAGGTGAGCAG
TGATACATCTTGCTCAGATATTGAAAAGCAAAATTCCTCACAACCACCTT
TTGGATTAGCAACCAACTGGAAGAATCCTGCTACACAGTCTTGTTCTGTG
TCAGAGGAATACCTTTCAGGAgccaatgaaaatgaagaagcgACTTCAAG
GACCAATGACCATGAAGGATTAACACCACGTGACTTCAATACACCAATCC
CAACGATCCGTATCGAGAACACAGACGGGAACGATAATGAATCCACCATG
TTGTCGATTGATGGTGAAAATGTCTTTGTGATTGGTTTAGAGCAAGAATT
AGATTCCGTGATGAAAGAAGAAGACAATGGAATGGAGGGTTTGCAAACCA
AACTGACCAAGATCCAggta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013570-exon-sc0000170-1491911889:284125..284374 | TCONS_00013570-exon-sc0000170-1491911889:284125..284374 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1510915933:284125..284374 | TCONS_00013570-exon-sc0000170-1510915933:284125..284374 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1575043694:284125..284374 | TCONS_00013570-exon-sc0000170-1575043694:284125..284374 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1491911889:284668..284946 | TCONS_00013570-exon-sc0000170-1491911889:284668..284946 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1510915933:284668..284946 | TCONS_00013570-exon-sc0000170-1510915933:284668..284946 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1575043694:284668..284946 | TCONS_00013570-exon-sc0000170-1575043694:284668..284946 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1491911889:285698..286760 | TCONS_00013570-exon-sc0000170-1491911889:285698..286760 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1510915933:285698..286760 | TCONS_00013570-exon-sc0000170-1510915933:285698..286760 | Clytia hemisphaerica | exon |
| TCONS_00013570-exon-sc0000170-1575043694:285698..286760 | TCONS_00013570-exon-sc0000170-1575043694:285698..286760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000170 | supercontig | sc0000170:284125..286760 + |
Blast
The following BLAST results are available for this feature:
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