TCONS_00013528 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013528
Unique NameTCONS_00013528
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013528 ID=TCONS_00013528|Name=TCONS_00013528|organism=Clytia hemisphaerica|type=transcript|length=238bp
GTTCAAAGTTCACGGAAAAATTAAACATTTGGTTTGACGTCAACAAAAGT
TGCTTGACTTCTGGAGGACagtcaagaacaagtgcaaattaggatacctt
CGGCAATCTCTCCTACTTAGGAGAGTATCTTAAATTGGATACAAAAAAGT
ATCCTAAATAGCaatcaggccatattttagaaaggcagggcagcgtccgt
tagtggccaaaaagggcactttgtatttgtgtttttcc
Run BLAST on NCBI

transcript from alignment at sc0000168:190237..190474

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013528 ID=TCONS_00013528|Name=TCONS_00013528|organism=Clytia hemisphaerica|type=transcript|length=238bp|location=Sequence derived from alignment at sc0000168:190237..190474 (Clytia hemisphaerica)
ggaaaaacacaaatacaaagtgccctttttggccactaacggacgctgcc
ctgcctttctaaaatatggcctgattGCTATTTAGGATACTTTTTTGTAT
CCAATTTAAGATACTCTCCTAAGTAGGAGAGATTGCCGaaggtatcctaa
tttgcacttgttcttgactGTCCTCCAGAAGTCAAGCAACTTTTGTTGAC
GTCAAACCAAATGTTTAATTTTTCCGTGAACTTTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007555XLOC_007555Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013528-exon-sc0000168-1491911889:190237..190474TCONS_00013528-exon-sc0000168-1491911889:190237..190474Clytia hemisphaericaexon
TCONS_00013528-exon-sc0000168-1510915933:190237..190474TCONS_00013528-exon-sc0000168-1510915933:190237..190474Clytia hemisphaericaexon
TCONS_00013528-exon-sc0000168-1575043694:190237..190474TCONS_00013528-exon-sc0000168-1575043694:190237..190474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:190237..190474 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.905796	3.15515	1.02894	0	0.989849	1.19421	0	4.70605	0	4.70535	1.23725	2.47365	0.642935	0	1.13206	3.4865	1.43111	0.992918	1.03325	2.69426	0	1.06503	2.90479	0.999299	0.891521	6.36833	4.07787	3.09292	2.1008
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013528 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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