TCONS_00013523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013523
Unique NameTCONS_00013523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013523 ID=TCONS_00013523|Name=TCONS_00013523|organism=Clytia hemisphaerica|type=transcript|length=588bp
AGCCGACGCCTCAGCGCCGCAAGCTTTCGCTCCAGCATATGCATATAAAC
CAGTGCCTGAAGCCCCACATGAGGCCCCAGCGTTTCCGGCTGAGGCCGAT
GCTCTTGCACATGGGTCAAATGCATTATCTTTCCCTTTCGTTTTGGTGCT
TGTATTTGCTGAAGCGGCTGATACTTGAGTGCTCTTCCCCACGGTTGAGT
CTTTGAAAGCTTTGTTCTCCATGAGCGCCAGGTTATCGGAGACGTTTATC
CAGGCACCTGCCACCCCCTGTGCTGCATCCATTTTTGTAGGTTTCATTGA
ACCCTTCTCGATTTGTACTCCTTTTTCTTTGTAAGCATGTTTGTACTGGA
CTACTGTTTTACCATTTCGATTGTCTTTCTCTTTATAGTCATAATACTTT
TCTGTTCGTTTATTCTGACATTTTGTACCTCTTCTTTCAGTGGTCTTTCG
TGTGTACTTGCCGTTGTTGCGAAATGTTCGTTGTCCAAGAGATTTTTTCT
CGAAATCGTCGGCTGGATCACCTTCAGGGTAATTCACCCAGTCACCAGCT
TCCGGACCGCTTTCTTCGCTATCTGACATCTTCCCTTT
Run BLAST on NCBI

protein sequence of TCONS_00013523-protein

>TCONS_00013523-protein ID=TCONS_00013523-protein|Name=TCONS_00013523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
KGKMSDSEESGPEAGDWVNYPEGDPADDFEKKSLGQRTFRNNGKYTRKTT
ERRGTKCQNKRTEKYYDYKEKDNRNGKTVVQYKHAYKEKGVQIEKGSMKP
TKMDAAQGVAGAWINVSDNLALMENKAFKDSTVGKSTQVSAASANTSTKT
KGKDNAFDPCARASASAGNAGASCGASGTGLYAYAGAKACGAEASA
Run BLAST on NCBI

transcript from alignment at sc0000168:84823..85410

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013523 ID=TCONS_00013523|Name=TCONS_00013523|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0000168:84823..85410 (Clytia hemisphaerica)
AAAGGGAAGATGTCAGATAGCGAAGAAAGCGGTCCGGAAGCTGGTGACTG
GGTGAATTACCCTGAAGGTGATCCAGCCGACGATTTCGAGAAAAAATCTC
TTGGACAACGAACATTTCGCAACAACGGCAAGTACACACGAAAGACCACT
GAAAGAAGAGGTACAAAATGTCAGAATAAACGAACAGAAAAGTATTATGA
CTATAAAGAGAAAGACAATCGAAATGGTAAAACAGTAGTCCAGTACAAAC
ATGCTTACAAAGAAAAAGGAGTACAAATCGAGAAGGGTTCAATGAAACCT
ACAAAAATGGATGCAGCACAGGGGGTGGCAGGTGCCTGGATAAACGTCTC
CGATAACCTGGCGCTCATGGAGAACAAAGCTTTCAAAGACTCAACCGTGG
GGAAGAGCACTCAAGTATCAGCCGCTTCAGCAAATACAAGCACCAAAACG
AAAGGGAAAGATAATGCATTTGACCCATGTGCAAGAGCATCGGCCTCAGC
CGGAAACGCTGGGGCCTCATGTGGGGCTTCAGGCACTGGTTTATATGCAT
ATGCTGGAGCGAAAGCTTGCGGCGCTGAGGCGTCGGCT

Coding sequence (CDS) from alignment at sc0000168:84823..85410

>TCONS_00013523 ID=TCONS_00013523|Name=TCONS_00013523|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000168:84823..85410 (Clytia hemisphaerica)
AAAGGGAAGATGTCAGATAGCGAAGAAAGCGGTCCGGAAGCTGGTGACTG
GGTGAATTACCCTGAAGGTGATCCAGCCGACGATTTCGAGAAAAAATCTC
TTGGACAACGAACATTTCGCAACAACGGCAAGTACACACGAAAGACCACT
GAAAGAAGAGGTACAAAATGTCAGAATAAACGAACAGAAAAGTATTATGA
CTATAAAGAGAAAGACAATCGAAATGGTAAAACAGTAGTCCAGTACAAAC
ATGCTTACAAAGAAAAAGGAGTACAAATCGAGAAGGGTTCAATGAAACCT
ACAAAAATGGATGCAGCACAGGGGGTGGCAGGTGCCTGGATAAACGTCTC
CGATAACCTGGCGCTCATGGAGAACAAAGCTTTCAAAGACTCAACCGTGG
GGAAGAGCACTCAAGTATCAGCCGCTTCAGCAAATACAAGCACCAAAACG
AAAGGGAAAGATAATGCATTTGACCCATGTGCAAGAGCATCGGCCTCAGC
CGGAAACGCTGGGGCCTCATGTGGGGCTTCAGGCACTGGTTTATATGCAT
ATGCTGGAGCGAAAGCTTGCGGCGCTGAGGCGTCGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007550XLOC_007550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013523-exon-sc0000168-1491911889:84823..85410TCONS_00013523-exon-sc0000168-1491911889:84823..85410Clytia hemisphaericaexon
TCONS_00013523-exon-sc0000168-1510915933:84823..85410TCONS_00013523-exon-sc0000168-1510915933:84823..85410Clytia hemisphaericaexon
TCONS_00013523-exon-sc0000168-1575043694:84823..85410TCONS_00013523-exon-sc0000168-1575043694:84823..85410Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013523-proteinTCONS_00013523-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000168supercontigsc0000168:84823..85410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0936088	0.182567	0.211977	0.103693	0.37871	0.199508	2.38008	3.06148	7.77073	11.0168	5.84604	3.11276	4.30102	3.22297	67.9072	45.7968	22.091	24.772	50.5902	42.9955	5.95864	3.64005	8.36422	6.17123	0	0.179394	4.18304	6.17394	32.4575	25.0471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top