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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013509 ID=TCONS_00013509|Name=TCONS_00013509|organism=Clytia hemisphaerica|type=transcript|length=1700bp
ataatattggacaatataaaataaataaaggtAGGAGTTAATTGAAGTTA
TTTATTAGGGATTGCATCAAAATCAACAAggatcttttaaaaacttttga
ttGATTTCCTCTCGAGCTAATCATTAAGGAACATTAGCTATGAAATCGTC
CGTAGTACAGAAAGAACTTTTTAGAGTGAGACAAATGAAAAGACAAATAT
CCATCGCACAGATTTGATAAGTACATTTTGTGCACTGTTTCGTGTTATTG
GTGAAGAAGGATGTACAAAAACCCAATTCAacgaattttgtttgtttttg
ccttttatttttacatcgaaCTTTTGACTACAAATTCAAGAATCAACAAA
TGCCCCATTGAAGAATTTCGACAAGCTCAACAACGAGAGGAAATTCTAAA
GAAAGTTGTTCTATCGTTTGTTGACATGGGAACAAGTAAATCATTATCCG
ATATTTACGAAGGAGCGTCATTAACTGGAAGCCTCAATCAAGGAACATTT
ATTGCATCATtgtttgaagaaaatttgaaatacaaaGGTTCGCTTGTCAA
CAGAGATATTGATATTGATTGCTTGATAAATGTTAGACTcgatctaaaaa
aaaaacagaaatgtCTGAGAGAAATCAAAGGAAAACCGGGATATGTGCAA
CTCCTGACCCGCTGTATACCAGATAAAGGAAATTGGTTTCTTTTTATCGA
GAAAGCAAACAAATATATCCAACCAGTCATGCTTAAAAGCAAGGTAAAGG
ATAAATTGAATGGTGAAGAATCAAACACCAGGGAAAGAGCAGTGCAAGCT
CTTTTTCTCTATCATTTCTTAAAACGAGGAATCATATTCAAAAGTATAAA
TGTAAAGGTTTCCGGGAAAACAAGCAAAGCTACTGtgaaacatatttttc
aaattcagaaagATGAGAAACTTTACATGAATGCCGAATTTGATTATGCT
TTTATGATTAAAGTATTCTACAGACCAAGGGTCGTGTTAAAATTTCTAAC
AAGGACACAATACAATGTTAGTAGAGAAATATCAGAATATATTCATGTTC
TAGCTAAAACATCACACGAGCAAAAACACAACATCAATACAACAGAATGG
ACTTATTCTTTCTCTCATATCGAGAATTTTATATTGAATTCATTTTCTGA
TGCAAAAAAACTTGTTTACGTGATTTTCAAATCGATATTCAAGAAATCGT
TAAAGTTTTTAGATGAAGAAATAATAACTTCTTACATCGTCAAAACTATT
GTTTTATGGAGATTCGAAGATGTCAATTTGGACAACTTCGACGATTGGCT
AAATGACACAAAGATTTGGGAAGCGATTGATATTTTATTTAGAGACTTAA
TTGTAGCAATTGAAAGAGGATTCTTAAAACATTATTTCATACCAgaaatc
aatgttcttaaacGTTTTGACAAAAGTTTGAGAGACAATTGTCAaaaacg
aataaaaaatatccgaacaaatttgaaaacaatacTCCTTATTAGTGAAA
TAAGTGAGGCAAGAAATATTCTTGAAGAGTTGTTGTTATTGTTCTACGAT
GCTCAAACCTATCTAACTTTGGAGGCATTTGTCGAGATTTTAGAAGATCC
ATTACGCCATTTTTTATAGAATTATATATTTTATTGTATCTTTTATGTAT
GTTGAGAACAAAGATTTGTttgtggataccccttaaaaccttaCAACAAC Run BLAST on NCBI transcript from alignment at sc0000168:343962..346686- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013509 ID=TCONS_00013509|Name=TCONS_00013509|organism=Clytia hemisphaerica|type=transcript|length=2725bp|location=Sequence derived from alignment at sc0000168:343962..346686- (Clytia hemisphaerica)
ATAATATTGGACAATATAAAATAAATAAAGGTAGGAGTTAATTGAAGTTA
TTTATTAGGGATTGCATCAAAATCAACAAGGATCTTTTAAAAACTTTTGA
TTGATTTCCTCTCGAGCTAATCATTAAGGAACATTAGCTATGAAATCGTC
CGTAGTACAGAAAGAACTTTTTAGAGTGAGACAAATGAAAAGACAAATAT
CCATCGCACAGATTTGATAAGTACATTTTGTGCACTGTTTCGTGTTATTG
GTGAAGAAGGATGTACAAAAACCCAATTCAACGAATTTTGTTTGTTTTTG
CCTTTTATTTTTACATCGAACTTTTGACTACAAATTCAAGAATCAACAGT
AAGTTTAAGAAATCCATGGAGGTAATTAAGATAGATGGAGAGTCAATGCC
TTTTGTTCTATTCTGATTTATCATCGGAAGCAAACAGCTGTTTGGTTGCT
TTGGGAATAAGATGATTAATTTTGGGTATACTCGTGGGAATATTTAAGAT
GAATGAAAAGACATTACATTTTTAACAAGTATATTGAAATATAATAGCCT
TGTCGTGAAAAATTGAATTAAAAACTTCACATAATAAGCACAATACTCCA
AACTTCTAGGGGAAGCTGCCATCGATAGATTTAAAAAAGAATTACTTGTT
ACGATTAGGAACCTTGTATCGATCATTTTGTCAGAGTATGAAAACCGCTG
CCCACTAGACGTGAAGATTTTACGATAAGAAACTTTCAATGATAATGTGA
TGCAACTCTCAATGTTAACAAAATGCCAACCCAAAAATTTGTCCTTATGA
AATTAATATACTCTTTTAGTCTTACATCAGTTGAAACTGTTTCGAATCGC
ATTTTAATCGCATGTCTCTTTCTGTTCTTATAAAGTTATAAATTGATGTT
TTTTGCTTCCAATGATGGTACATCAAAGAAAAGCCGCTTTGAATAGATTT
ATAAAAGATTTCAACGATCATTTAGGTCATTACCGAAACGTTTTCTCTCC
ATCTGTATCTTCATTACCTCAATGAGAAATCCAATCTAACTTCTATTGTT
TACATTGAAACTTACACTACTCCAGGAGCGGTCTAGACATACCCTTACAA
GTAGTATATACCAATTTTTATTATGAACTTTTCATAATATCATTCCTTTG
GATTTATTACCTAAAAGCCGTTTTATATTTATTTCGATAATTTGCCACAA
TGATGACCAAGCATAAAAATTATTGGAATGCAAGCCTCCAAATCCTGGAT
TTTTTATTCAATTAGAGTTTGCAAAATATGCGGTCCAATATACTTAATAT
ACATATTTCCAATACTTGTTCTGGAAACGCTGTGCCTTTTTTAATTAAAC
AATTCTATTTTGTAACCTATTAGAATGCCCCATTGAAGAATTTCGACAAG
CTCAACAACGAGAGGAAATTCTAAAGAAAGTTGTTCTATCGTTTGTTGAC
ATGGGAACAAGTAAATCATTATCCGATATTTACGAAGGAGCGTCATTAAC
TGGAAGCCTCAATCAAGGAACATTTATTGCATCATTGTTTGAAGAAAATT
TGAAATACAAAGGTTCGCTTGTCAACAGAGATATTGATATTGATTGCTTG
ATAAATGTTAGACTCGATCTAAAAAAAAAACAGAAATGTCTGAGAGAAAT
CAAAGGAAAACCGGGATATGTGCAACTCCTGACCCGCTGTATACCAGATA
AAGGAAATTGGTTTCTTTTTATCGAGAAAGCAAACAAATATATCCAACCA
GTCATGCTTAAAAGCAAGGTAAAGGATAAATTGAATGGTGAAGAATCAAA
CACCAGGGAAAGAGCAGTGCAAGCTCTTTTTCTCTATCATTTCTTAAAAC
GAGGAATCATATTCAAAAGTATAAATGTAAAGGTTTCCGGGAAAACAAGC
AAAGCTACTGTGAAACATATTTTTCAAATTCAGAAAGATGAGAAACTTTA
CATGAATGCCGAATTTGATTATGCTTTTATGATTAAAGTATTCTACAGAC
CAAGGGTCGTGTTAAAATTTCTAACAAGGACACAATACAATGTTAGTAGA
GAAATATCAGAATATATTCATGTTCTAGCTAAAACATCACACGAGCAAAA
ACACAACATCAATACAACAGAATGGACTTATTCTTTCTCTCATATCGAGA
ATTTTATATTGAATTCATTTTCTGATGCAAAAAAACTTGTTTACGTGATT
TTCAAATCGATATTCAAGAAATCGTTAAAGTTTTTAGATGAAGAAATAAT
AACTTCTTACATCGTCAAAACTATTGTTTTATGGAGATTCGAAGATGTCA
ATTTGGACAACTTCGACGATTGGCTAAATGACACAAAGATTTGGGAAGCG
ATTGATATTTTATTTAGAGACTTAATTGTAGCAATTGAAAGAGGATTCTT
AAAACATTATTTCATACCAGAAATCAATGTTCTTAAACGTTTTGACAAAA
GTTTGAGAGACAATTGTCAAAAACGAATAAAAAATATCCGAACAAATTTG
AAAACAATACTCCTTATTAGTGAAATAAGTGAGGCAAGAAATATTCTTGA
AGAGTTGTTGTTATTGTTCTACGATGCTCAAACCTATCTAACTTTGGAGG
CATTTGTCGAGATTTTAGAAGATCCATTACGCCATTTTTTATAGAATTAT
ATATTTTATTGTATCTTTTATGTATGTTGAGAACAAAGATTTGTTTGTGG
ATACCCCTTAAAACCTTACAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013509-exon-sc0000168-1575043694:346339..346686 | TCONS_00013509-exon-sc0000168-1575043694:346339..346686 | Clytia hemisphaerica | exon |
| TCONS_00013509-exon-sc0000168-1575043694:343962..345313 | TCONS_00013509-exon-sc0000168-1575043694:343962..345313 | Clytia hemisphaerica | exon |
| TCONS_00013509-exon-sc0000168-1510915933:346339..346686 | TCONS_00013509-exon-sc0000168-1510915933:346339..346686 | Clytia hemisphaerica | exon |
| TCONS_00013509-exon-sc0000168-1510915933:343962..345313 | TCONS_00013509-exon-sc0000168-1510915933:343962..345313 | Clytia hemisphaerica | exon |
| TCONS_00013509-exon-sc0000168-1491911889:346339..346686 | TCONS_00013509-exon-sc0000168-1491911889:346339..346686 | Clytia hemisphaerica | exon |
| TCONS_00013509-exon-sc0000168-1491911889:343962..345313 | TCONS_00013509-exon-sc0000168-1491911889:343962..345313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168 | supercontig | sc0000168:343962..346686 - |
Blast
The following BLAST results are available for this feature:
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