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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013431 ID=TCONS_00013431|Name=TCONS_00013431|organism=Clytia hemisphaerica|type=transcript|length=6848bpRun BLAST on NCBI transcript from alignment at sc0000167:484471..497221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013431 ID=TCONS_00013431|Name=TCONS_00013431|organism=Clytia hemisphaerica|type=transcript|length=12751bp|location=Sequence derived from alignment at sc0000167:484471..497221- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00013431 vs. Swiss-Prot (Human)
Match: CE350 (Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 8.837e-37 Identity = 89/186 (47.85%), Postives = 130/186 (69.89%), Query Frame = 2
Query: 1499 TIQSNYSDEKFQSSFTEDDLK-HDFRQVLPSENHRRKSLDVHRDFIVSGNDETSSDEMLPAQKVAEKVSKKRTRSPFVA-EDTFTRFTSDMVRQYIQEEEVRAKHQASLLALREKAIIDKTKAEIAFLETQKKSLMKKKGARADDKMPPINKKQRALMKRLESEQAEIRRIKQAHKAASEERKFML 2050
+I + YS KF S TED+++ FR +LPSE+HRR +++ R G+ + S +E P + + K PF +D+F++FT +MVRQY++EEE+RA HQ+SLL LREKA+ +KTKAE+A+LE QKK L + KG DDKMPP+ KKQR L+ RL+ E+AEI+R+++A+KAA +ER+ +L
Sbjct: 1601 SIATEYS-LKFDESMTEDEIEEQSFRSLLPSESHRRFNMEKRR-----GHHDDSDEEASPEKTTLS--TAKELNMPFSGGQDSFSKFTMEMVRQYMKEEEMRAAHQSSLLRLREKALKEKTKAELAWLEHQKKHL-RDKG--EDDKMPPLRKKQRGLLLRLQQEKAEIKRLQEANKAARKERQLIL 1775 HSP 2 Score: 105.531 bits (262), Expect = 3.148e-22 Identity = 66/199 (33.17%), Postives = 111/199 (55.78%), Query Frame = 1
Query: 5995 LRIPLNEKDTREIVNLALQEIQRQNFSMSELERLIVPDSILALETYG-EIDVPSTMLYKTLIFDLTLQLYCELKEFRDIQAKPRPIWLKRPRKTFSKFTRQV----HLDESNSFPDLVKDHVCGCIGLQSGRPSLMKLKRKLPLNLEKKDYVDAVLVDELRQEEGQWVNYDEDELRVKFQLADNILESLLEETVDIINQ 6576
L +P ++ +V+ A +E+ + +L + +P +L + G +I+ S +YK +FDLT +++ E+ F + +P+W+K P + S + R+V +LDE SF + V L+ ++ + +K+D VD +LV EL +EE QWVNYDEDEL VK QLAD I E+L+++T+D++NQ
Sbjct: 2914 LAVPHTAEEVEILVHNAAEELWKWKELGHDLHSISIPTKLLGCASKGLDIESTSKRVYKQAVFDLTKEIFEEI--FAEDPNLNQPVWMK-PCRINSSYFRRVKNPNNLDEIKSF---IASEVLKLFSLKKEPNHKTDWQKMMKFGRKKRDRVDHILVQELHEEEAQWVNYDEDELCVKMQLADGIFETLIKDTIDVLNQ 3106 The following BLAST results are available for this feature:
BLAST of TCONS_00013431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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