TCONS_00013406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013406
Unique NameTCONS_00013406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013406 ID=TCONS_00013406|Name=TCONS_00013406|organism=Clytia hemisphaerica|type=transcript|length=2713bp
AGGGACACAGAGACAgagttgttttcattttattagatTTAACTGACATA
AAAATGGCGCAAATTGGCGAGCTCAGCTTAGCTCCTACTCGTGCTCCTGT
ATGCAGTGGAAGTAGTTGTGAAACAATTGACGCGCTTCACAAGACGTTTT
CCTCATTATCATTGATTGGAAGTTTTGTTGTGTTGGTCTTAATTCTCATC
CTAAAAGAATATCACATGGATGCTCAAAAGATGATCTTATTCATGGTCTT
GTCAGCTTTCATTGATAGTATTGCTTATTTAATGGGTGACGCTGAAACAA
CACATGGTGCAACCTGTGAAGCTCAATCATTTCTCATGCAATATTTTGAT
TGGGCTACGTTATTATGGGTGACGATGATCacaacaaatttgattttaat
cataaaaaataaacagtcacctaaatattattatatttaCCATGCCGTTG
TTTGGCTTGGTGCTTTGTTTTTTGCTATTGTCCCTTTCTTTGAAAACACA
TACGGTCATGCAGGACTTTGGTGTTGGATCAAGAGAGAATATACAGGATA
TAGGTTTGGAACATGGTTCGGACCTCTATTTTTCATATGTTTTGGAATGT
GTATCACTCTTGGCTATGTCACCTATTCAGTATATCAGGCTACTCAAGCC
CAAACTGGAGTCTCTGTTGCAACCGAAAATATCAACAGAAGCTATCGAAA
TGAATTGAAACGACTTGCTTTTTATCCATTGGTTTATATCATTTTGAATA
TTCCAACCTTAGCTTATCGAATCGAAGATGCTTCACATCCTAATAAGAAA
CCCAATTATGGCATCTTGGTTGTATCTTCAATATTTGGGCCTTCAGTAGG
AGCTGCTAATGCTATCATCTTTGCTACAATCAATTTAGGTTCGATTCGGA
ACCTAACATGGCCAATGATCAGAAATAATGTAATATTGTTGTTCAAACGT
GAGACGCAAACGCAAATCGAACATAATGTTGTTCTTGAAGAAGGTCCACA
AACAAGTGATTCATCAGAGCAATATCAACCGAtgccttgatttttttttg
gcaaaatctaATTCAGAACAGTACAGCTTCTGGTTACACGAAAtgttgtt
cttatgaaaaaggtCCAGAATCAACTGAAGCCAGTAGGCGATATCAACTG
ATACCTTGATTTGCTCTGATAAAAACTGGTGATGAACAGTATCTACACTG
AAATGACAGTGTAATCTTAAGATTTATATTATAAAGCTataatcaatata
ttttataattataataaaGGGTAGTCATAGTCAGCAAAACTCTATTGAAG
TTAGAAGTCTATTGAAGTTAGCTCTAGAAACGGTGAATTAGCCCGATTTT
CTACTGAAGGTCTTTCTGATCTTTTTTTCGGACAATAATTGGAAAACTAT
TGCCCactaaaaattttgtttcattataagcattttgtttatTTGGCTTA
TCTGATAATGTTTagtaataaggtccgggggttggaaaattttcgaaaaa
ttaacaagcgggaggccgtttatttggaacctaggACTACcatatttcat
aaaatatatCATTTCTGATCATTTTGGTATTCTAACTTTCGCTTTCAAAC
TTTCGCTTTCAAACTTACAAAAGTACGAAAAGAAAAAGACAGGAATTTTT
AAATGAGAGTAAAATATAAAGtatgacatttttttaaaaatcgaagaaaa
tttttcaagtaGGTCCTTCTAAGAATCAACTATTCAGCAAAAAtcggtct
ctctaagggtcggttttcggaagtcccgtccgcacatacccctcatccac
CAAACCTAGTACTCCCCCGGACATCATTCCATTTCATAAACAATGAAAAG
ACAATACTTCGCTTCCACTGtaagggacaagctggagtttttacaagctc
tcgtttgatttggttggtcgttaacctgtaataaaacaattttgttactt
tttctaaagaacgcgtcatctctattacttcaaataaccaatcaattagt
gaagtctcttAAAAAAACTCCAGCCCATCCCCACTGTAACGGGTATGCAG
GTTTATTATTTGACTTGTCACATGTTAACAATCTTAATATTAATAGACAA
GTGTCGCTTAGCAATGCACTTTAAGTATTTAATTCAGGACTCAAAACGTT
TATAATTTCCTCTTATAATGATATATTTATTAACATGCAATACGGACCAC
TCTTTGAAAGGATCAACCGATTTGATATCTATAGAGTCAAATTAAACTTT
CTAGACATGAGATTTTTATCCTAAAAGGTTAAGAAATGGACCAAAACTAT
CCATAAACCCTGCGTTATGTTTTCCTTTTATGCTTTGAAACCATCTTTTT
ATCCTTGTGCTTTATCCAATTTGGAAAAGCACATTTTCGCACTGATTTAT
ACCCCTAGAAGttttttatttccaaatttGCTTGTAGATATTCTTCCACt
gcattttttattatttataaaataaaaatttttttttataaaactcggta
taaatattttcttgcatttttttatattttcatttctagatAATTATtgc
attgattgattgattgattgattgattgattgattgattgattgattgat
tgattgattgattgattgattagcATATTATTTCATATTATCCACGATTT
ATATTAAATTGAAAAtgtgtatttaaaaaataatttttcagttaatCGGT
AATAATAAGGCag
Run BLAST on NCBI

transcript from alignment at sc0000167:54013..57300-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013406 ID=TCONS_00013406|Name=TCONS_00013406|organism=Clytia hemisphaerica|type=transcript|length=3288bp|location=Sequence derived from alignment at sc0000167:54013..57300- (Clytia hemisphaerica)
AGGGACACAGAGACAGAGTTGTTTTCATTTTATTAGGTATTTATGATTAC
TTTTTTTTTCAATATCATGATAATCAATAATATAATGTATAAGTATAGTC
CGGTGTTTTGTCTGGTGCCAAAAGTATCCCTCTCAGCCACACCAGATCAG
AAACCTTTTGTTTGGTGTTATAGTCCAGTGTTAATTTTTCGAAGTTCTGG
ATACTGTGTGTTTCAAAATAATGCTCACCGGACTCAAGTCCACTGTTGCA
GAGGTGCCAACTCTAAAGTAGTGCTGAAAAACACTTTTCAAAACACTTTT
CAAAGAGAGAAACTTTTTTGTGGCGCACCCGGTAGAAAGTTTACACACAG
CCTAAATCTGACCTTCAGACCAGTTCAGACCGATAATTCCTGAAAAATTC
TTATAAGAGAAATGTGCATTTACAATACAGTAGCTTCAAACTCTTAAAGA
GAAATATTAATAAAGATAATTCTCATACATAATTGTATATGTGAGTATTA
TCTTCTTTATAGTGGAGGTAAACTGTTTTTCGGTCGTGTTGTTTTTTGTA
ATCTTTTAACTTTTTAAGCAGACTTACAGTACCTGTTAAAATATCAAATT
TCTTTTGATAGATTTAACTGACATAAAAATGGCGCAAATTGGCGAGCTCA
GCTTAGCTCCTACTCGTGCTCCTGTATGCAGTGGAAGTAGTTGTGAAACA
ATTGACGCGCTTCACAAGACGTTTTCCTCATTATCATTGATTGGAAGTTT
TGTTGTGTTGGTCTTAATTCTCATCCTAAAAGAATATCACATGGATGCTC
AAAAGATGATCTTATTCATGGTCTTGTCAGCTTTCATTGATAGTATTGCT
TATTTAATGGGTGACGCTGAAACAACACATGGTGCAACCTGTGAAGCTCA
ATCATTTCTCATGCAATATTTTGATTGGGCTACGTTATTATGGGTGACGA
TGATCACAACAAATTTGATTTTAATCATAAAAAATAAACAGTCACCTAAA
TATTATTATATTTACCATGCCGTTGTTTGGCTTGGTGCTTTGTTTTTTGC
TATTGTCCCTTTCTTTGAAAACACATACGGTCATGCAGGACTTTGGTGTT
GGATCAAGAGAGAATATACAGGATATAGGTTTGGAACATGGTTCGGACCT
CTATTTTTCATATGTTTTGGAATGTGTATCACTCTTGGCTATGTCACCTA
TTCAGTATATCAGGCTACTCAAGCCCAAACTGGAGTCTCTGTTGCAACCG
AAAATATCAACAGAAGCTATCGAAATGAATTGAAACGACTTGCTTTTTAT
CCATTGGTTTATATCATTTTGAATATTCCAACCTTAGCTTATCGAATCGA
AGATGCTTCACATCCTAATAAGAAACCCAATTATGGCATCTTGGTTGTAT
CTTCAATATTTGGGCCTTCAGTAGGAGCTGCTAATGCTATCATCTTTGCT
ACAATCAATTTAGGTTCGATTCGGAACCTAACATGGCCAATGATCAGAAA
TAATGTAATATTGTTGTTCAAACGTGAGACGCAAACGCAAATCGAACATA
ATGTTGTTCTTGAAGAAGGTCCACAAACAAGTGATTCATCAGAGCAATAT
CAACCGATGCCTTGATTTTTTTTTGGCAAAATCTAATTCAGAACAGTACA
GCTTCTGGTTACACGAAATGTTGTTCTTATGAAAAAGGTCCAGAATCAAC
TGAAGCCAGTAGGCGATATCAACTGATACCTTGATTTGCTCTGATAAAAA
CTGGTGATGAACAGTATCTACACTGAAATGACAGTGTAATCTTAAGATTT
ATATTATAAAGCTATAATCAATATATTTTATAATTATAATAAAGGGTAGT
CATAGTCAGCAAAACTCTATTGAAGTTAGAAGTCTATTGAAGTTAGCTCT
AGAAACGGTGAATTAGCCCGATTTTCTACTGAAGGTCTTTCTGATCTTTT
TTTCGGACAATAATTGGAAAACTATTGCCCACTAAAAATTTTGTTTCATT
ATAAGCATTTTGTTTATTTGGCTTATCTGATAATGTTTAGTAATAAGGTC
CGGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGAGGCCGTTTATTT
GGAACCTAGGACTACCATATTTCATAAAATATATCATTTCTGATCATTTT
GGTATTCTAACTTTCGCTTTCAAACTTTCGCTTTCAAACTTACAAAAGTA
CGAAAAGAAAAAGACAGGAATTTTTAAATGAGAGTAAAATATAAAGTATG
ACATTTTTTTAAAAATCGAAGAAAATTTTTCAAGTAGGTCCTTCTAAGAA
TCAACTATTCAGCAAAAATCGGTCTCTCTAAGGGTCGGTTTTCGGAAGTC
CCGTCCGCACATACCCCTCATCCACCAAACCTAGTACTCCCCCGGACATC
ATTCCATTTCATAAACAATGAAAAGACAATACTTCGCTTCCACTGTAAGG
GACAAGCTGGAGTTTTTACAAGCTCTCGTTTGATTTGGTTGGTCGTTAAC
CTGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCATCTCTAT
TACTTCAAATAACCAATCAATTAGTGAAGTCTCTTAAAAAAACTCCAGCC
CATCCCCACTGTAACGGGTATGCAGGTTTATTATTTGACTTGTCACATGT
TAACAATCTTAATATTAATAGACAAGTGTCGCTTAGCAATGCACTTTAAG
TATTTAATTCAGGACTCAAAACGTTTATAATTTCCTCTTATAATGATATA
TTTATTAACATGCAATACGGACCACTCTTTGAAAGGATCAACCGATTTGA
TATCTATAGAGTCAAATTAAACTTTCTAGACATGAGATTTTTATCCTAAA
AGGTTAAGAAATGGACCAAAACTATCCATAAACCCTGCGTTATGTTTTCC
TTTTATGCTTTGAAACCATCTTTTTATCCTTGTGCTTTATCCAATTTGGA
AAAGCACATTTTCGCACTGATTTATACCCCTAGAAGTTTTTTATTTCCAA
ATTTGCTTGTAGATATTCTTCCACTGCATTTTTTATTATTTATAAAATAA
AAATTTTTTTTTATAAAACTCGGTATAAATATTTTCTTGCATTTTTTTAT
ATTTTCATTTCTAGATAATTATTGCATTGATTGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTAGCA
TATTATTTCATATTATCCACGATTTATATTAAATTGAAAATGTGTATTTA
AAAAATAATTTTTCAGTTAATCGGTAATAATAAGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007491XLOC_007491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013406-exon-sc0000167-1575043694:57265..57300TCONS_00013406-exon-sc0000167-1575043694:57265..57300Clytia hemisphaericaexon
TCONS_00013406-exon-sc0000167-1575043694:54013..56689TCONS_00013406-exon-sc0000167-1575043694:54013..56689Clytia hemisphaericaexon
TCONS_00013406-exon-sc0000167-1510915933:57265..57300TCONS_00013406-exon-sc0000167-1510915933:57265..57300Clytia hemisphaericaexon
TCONS_00013406-exon-sc0000167-1510915933:54013..56689TCONS_00013406-exon-sc0000167-1510915933:54013..56689Clytia hemisphaericaexon
TCONS_00013406-exon-sc0000167-1491911889:57265..57300TCONS_00013406-exon-sc0000167-1491911889:57265..57300Clytia hemisphaericaexon
TCONS_00013406-exon-sc0000167-1491911889:54013..56689TCONS_00013406-exon-sc0000167-1491911889:54013..56689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:54013..57300 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00204721	0	0	0	1.05469	0.456771	0.153684	0.620904	0.00146651	0.245069	5.65945	1.69926	0	0	0	0.057384	0.493344	0	0.135327	0.06069	0	0	2.01025	2.98863	0	0	0.00321268	3.71108e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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