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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013404 ID=TCONS_00013404|Name=TCONS_00013404|organism=Clytia hemisphaerica|type=transcript|length=1373bp
GGCTTTAATAATCTATGTCTATGAAGTGTCAAATGATGTGAAAAACACCA
AGGCTGATAAAAATAATAGTCTAACGTTATGTTGTTTTGATGAACACTGT
TTCGATCATCAAGGCACTGCGATTTGGAAAGGATTGGGAAGATCAAAGAG
GGTTACAAGTGCGAGTTGTTAAAATTTCGAGAGACATTTTGGATTAATTG
AATGCTGACTGTTATCTCCGGACCATAATTTATCACAAAGGATCTCAGGA
AAGATGACGAGTATATACGTGGACAAAACGTTGTATCAAAATGTTGATTA
TGTTTTAAAAGAACTAcagaagaaattcaaaaatcgaACTTTACGCATGT
CGGATTTTGAAATTAATGTTTCAAAACTTTGTGATGAAGATTTTTCTACA
GAGGATCAAATGATGAGTAGCGACCTGGGAACGGACTTAGAATTAGACTT
TGATGGGGGAGAaatcaaaatgacgtcatcgaggAAAAGTACGTCACCTT
TAGTTAAACAACTTTCAAAGGAGGAAATGGAATTCCGAGATCACATGGAA
ACCATCATGTCGgtttttgaaaacgaaacaaAACAATTAGATTCCAAGAT
AGACACAGAACGTAAACGAATACAGAAGAAATATCAAGCAAATTTGAACA
TCGAAGTTCAAAAACGAACATTACAATTAAACGAAACtattaaaaacttg
aaaaatcgtATTGAAGTGCTTGAAAGTGAAATGGACGAACTGGTTATAAG
TTTCAAACAAGAGAAGAAAGGTTTAGATGAACTTTATCAAAATGAAATGA
AGAGAAAGTTATTACAATTGAAGATGAATAATGACGATTGGCCTAAAACC
AAAGTTTGAGTAGAACTATACTCCAAGAAGTCATTTTGTGTCGAGGGGAT
TAAAAAATACATTCgagattttttatgttttgttaaaggttttgttttta
cataattgttaccgtttcatatcagacacatatttcatatcaggacagtg
tttgcctattgttttattatgctgatatttaagcaaaaaaataaatgttt
attttttcctctttctgaccaatcttgctccatatccatttcaatccaat
gtgaaaaagcttgtgaattaaaattgatgagaaaGCAAAGGATATccatt
cttatttaaaaacaaaacctttattcCGCTACTTGGAAGCAAACGGTCGA
TTTGCATAAGGGAACACCTACTTTAGgggtacaaactttcgcgatttttg
cgaattttagcccttttcgtgaaagtaaatgtctttgaaaattccttAGA
GGGtagttcgcgaaagtttatgcgcgcgaaaaaaaatctctgaaaagaaa
atttacttaaATTTTCCTCTTCG Run BLAST on NCBI transcript from alignment at sc0000167:46784..52096- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013404 ID=TCONS_00013404|Name=TCONS_00013404|organism=Clytia hemisphaerica|type=transcript|length=5313bp|location=Sequence derived from alignment at sc0000167:46784..52096- (Clytia hemisphaerica)
GGCTTTAATAATCTATGTCTATGAAGTGTCAAATGATGTGAAAAACACCA
AGGCTGATAAAAATAATAGTCTAACGTTATGTTGTTTTGGTAAGGTCTAG
TTTGAGTGTGGCATGTTTGCCTGAGATCTCGAGTGCACAACTCGGAAAAA
ATCGAGTGCAGGTGCAATTTTTTTCAGGTTTTCATGTGCAAGTGCAGAGG
GTTTTTTAACCGCAAATGCAGAGTTCTGCTATTTTCTCAATAAGTGCAGC
TAATATTAGCAATTTTTTTGCCTTTTTGGGCAATTGTTTCGAGGTATAAG
TGCACCCTTGTCCGGACCAAAATGTATCAGGTGCGCTTTTCCAGTGAGGA
AGTTGGTATTTCCGAATTTTTCCTTGAGTGCAGCCTTGCCATACTCTGCA
AACTGGGGTAAGGTGATATTATGTTTCTTGAGATATAGTTGCATTCTCAA
AACAGACTAAAGAAATCAATCTAACAACTTTCTAGGTTATTTGAATCAAC
AGTTCCACCATTGGATCAAAGTCAAGTGATTTAACTGTTTAACTTTCCTT
TGTAATGTTGGTATCACTTGCTATTTGATGTACAGAATCATTTAATTGGG
GTACCAATTTTTGCATCTAATGATAAGAAGAGGGAGACCCTAGATTTTGA
GAGCCATCGATGCCCGGGGCAAAGGACCGACGGGTATGTGCGGGTCCTAA
GGGTACCTTTTGCAATATGTTTAAAATGCACTGTAAGGGTCGGAAAAACT
AGAGATGCACTGTAAGGGTAGAAATTTCAGAAAATTCTTGAAAAATCTAG
ATATTTTGACCAAAAATGCTGGAATTTTTACCAATTTTCGCACGAAAGGG
ATCGAAAATTTGGGGGAGAATGCACTCTAAGGGTATGATTTTCACTGATT
TTTGCTGCACTGTAAGGGTGCAATCTTAAAAGCCAATTTTTGGCCCGCAC
ATACCGTCAGTCCGCAAACCCAGTGCCCCCCCCCCGGGCATCGATGAACT
AACTATTCTTGAAATATTTCAGGAAATTCCGATGGAAATTGGATAACAAC
CTGATCATTATTCATGGTTCTCTAAAACTAAGTTTTGGTTTTCTTGATTC
TTGATTATAGAAACTAAAAAAGTAGACCATTGCATTTTCAAAGTCGACCT
CTAAAGAATTTTATCTCTAATTTTCTTACAAAAACCTCTTCCAATGCAAA
AAGTGCAAATGGCAGATGACAGATAATAGACACGTAATTAAATCTACCAA
TTACCATTTTAATAATCGACGTATCCAATCTATTGTCTCAAAACAACCTC
ATCAAACTGTTAAACAATAGGTTCATACAATAGTCTGGTAATAATCAGCA
ACTTTTTTGAATAGATTCTCATTTATTCGATTTACCATGCGTTTTAGTCT
AATTAAGCTTTTCTTGTAATTTTTATCTTTCATAAAGAGACCGCTAATAT
TCAACATGTTTCGTCGTATTTATTGAATTAGATGTGTTTTATTTTTATGG
CAGATGAACACTGTTTCGATCATCAAGGCACTGCGATTTGGAAAGGATTG
GGAAGATCAAAGAGGGTTACAAGTGCGAGTTGTTAAAATTTCGAGAGGTA
TTATTCTTTTTCCATTTTTTTTAGCTTTTATCATTTCACGCAGCACAATT
TTTCAAATAGATTTCACTTTAAATCCATCTTTTGTATGTATGAAAACTGT
TTCAGAAGGGAGATAACTGGTTTTATTTTCCATCTGAGAGTTTCATCTCT
CGGCCCTTCGGGGCTCGATTTAGATTCGAACTGTGACGACGACAAGTTTT
TTTTTCAATACAAGAACTTGTTTAAAAAATGGATTTTTTCATTACAGTGC
AGTGGTTTTTGATTTGATATCTCTGTCTTTCTGGTCGTCAGAAGTTAGAA
GAATATTTTCTTCTTTTTGAAAAGTTTGCCTCCATTACTATGTAATGTAA
TTAGTATTATTTTACCTGACCCCCATTATGCCGATTATCATAACATATTC
TGAACTATCCTAAAACCTACTCCATTTAAATAAACCTGTACATGTTTTAC
TAATTTCTAACAACTTTAGCCTGAAACGTTGGGCTGTAATTTGGCTAAAA
CCTTAGAACAAATTGAGCCTCAGATTTCCAAAATTATGGATTTTTCCACC
ATTCCATTCATTAGAAACTCGAGAGTTTAAATGTTAAGGCCAATTTCGTC
CTAAAAGTTTTTCTATAAGAACAATGTTTAAATACAAGTACAGTTGACGC
TCTCTACTAGTTCGACGTTCTACTATTCGATAGGCTGCCTTATTCTGCCT
TATTCGATGAAATTTAAAGTCCCCGTCAACAGGAAACTCTCATAAACGAC
GCTCTCTTCTTCGATAAGCTCCCTTCTTCGATGAAAATCCAATTCCCCTN
ACTTTGATGGGGGAGAAATCAAAATGACGTCATCGAGGAAAAGTACGTCA
CCTTTAGTTAAACAACTTTCAAAGGAGGAAATGGAATTCCGAGATCACAT
GGAAACCATCATGTCGGTTTTTGAAAACGAAACAAAACAATTAGATTCCA
AGATAGACACAGAACGTAAACGAATACAGAAGAAATATCAAGCAAATTTG
AACATCGAAGTTCAAAAACGAACATTACAATTAAACGAAACTATTAAAAA
CTTGAAAAATCGTATTGAAGTGCTTGAAAGTGAAATGGACGAACTGGTTA
TAAGTTTCAAACAAGAGAAGAAAGGTTTAGATGAACTTTATCAAAATGAA
ATGAAGAGAAAGTTATTACAATTGAAGATGAATAATGACGATTGGCCTAA
AACCAAAGTTTGAGTAGAACTATACTCCAAGAAGTCATTTTGTGTCGAGG
GGATTAAAAAATACATTCGAGATTTTTTATGTTTTGTTAAAGGTTTTGTT
TTTACATAATTGTTACCGTTTCATATCAGACACATATTTCATATCAGGAC
AGTGTTTGCCTATTGTTTTATTATGCTGATATTTAAGCAAAAAAATAAAT
GTTTATTTTTTCCTCTTTCTGACCAATCTTGCTCCATATCCATTTCAATC
CAATGTGAAAAAGCTTGTGAATTAAAATTGATGAGAAAGCAAACGATATC
CATTCTTATTTAAAAACAAAACCTTTATTCCGCTACTTGGAAGCAAACGG
TCGATTTGCATAAGGGAACACCTACTTTAGGGGTACAAACTTTCGCGATT
TTTGCGAATTTTAGCCCTTTTCGTGAAAGTAAATGTCTTTGAAAATTCCT
TAGAGGGTAGTTCGCGAAAGTTTATGCGCGCGAAAAAAAATCTCTGAAAA
GAAAATTTACTTAAATTTTCCTCTTCGATGAAAACAAGGATAAAATTTTT
TGTAGATATTATGCAAAAGTCCATCAATTGTGGTTTGAATACATTTAAGC
GATCAAAACACTGGTTTTCTCACCGAAAACTTGAATTTTCTACTAAAAAT
ATTTGTCAAATTCGCGAAAGTAAATGTCCTAGATTTCGCGATTTTTCTAC
CTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTAAAGTATACAGAT
TTGAAGGTTTGCTTCCATAATGGCGGGATATTACGTAACTTAACAAAACA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAAACTCTCATAAACGACGCTCTCTTCTTCG
ATAAGCTCCCTTCTTCGATGAAAATCCAATTCCCCTTGAAGATCGAATTA
GAGAGCGTCAACTGTATACGCAGGGTGATATAGGGGTGGTTGCTTATTAA
AAGAAAAACATGTAATTGATTTCTGAAATTAATAAGAATAACGAAAACCT
TGAAACATAATCTGGTTTGTAAAATACAGTACACATCGAGTTCTTTAGAA
TTTTCTGTGGAACGGGTTAGAAATTGATGTGCACTTTTTCAAACTCTTAT
TATTTGAGATTATCTTTTCAGAGTACAGTATCATCATTATAAGTAAGGTA
ATTATCAACGATAGGTTCTCATTAAAAGATTTCCTCTGATTAAACAAAAG
CTTTTTTGATTACTTTTTTTCAGACATTTTGGATTAATTGAATGCTGACT
GTTATCTCCGGACCATAATTTATCACAAAGGATCTCAGGAAAGATGACGA
GTATATACGTGGACAAAACGTTGTATCAAAATGTTGATTATGTTTTAAAA
GAACTACAGAAGAAATTCAAAAATCGAACTTTACGCATGTCGGATTTTGA
AATTAATGTTTCAAAACTTTGTGATGAAGATTTTTCTACAGAGGATCAAA
TGATGAGTAGCGACCTGGGAACGGACTTAGAATTAGACTTTGATGGGGGA
GAAATCAAAATGACGTCATCGAGGAAAAGTACGTCACCTTTAGTTAAACA
ACTTTCAAAGGAGGAAATGGAATTCCGAGATCACATGGAAACCATCATGT
CGGTTTTTGAAAACGAAACAAAACAATTAGATTCCAAGATAGACACAGAA
CGTAAACGAATACAGAAGAAATATCAAGCAAATTTGAACATCGAAGTTCA
AAAACGAACATTACAATTAAACGAAACTATTAAAAACTTGAAAAATCGTA
TTGAAGTGCTTGAAAGTGAAATGGACGAACTGGTTATAAGTTTCAAACAA
GAGAAGAAAGGTTTAGATGAACTTTATCAAAATGAAATGAAGAGAAAGTT
ATTACAATTGAAGATGAATAATGACGATTGGCCTAAAACCAAAGTTTGAG
TAGAACTATACTCCAAGAAGTCATTTTGTGTCGAGGGGATTAAAAAATAC
ATTCGAGATTTTTTATGTTTTGTTAAAGGTTTTGTTTTTACATAATTGTT
ACCGTTTCATATCAGACACATATTTCATATCAGGACAGTGTTTGCCTATT
GTTTTATTATGCTGATATTTAAGCAAAAAAATAAATGTTTATTTTTTCCT
CTTTCTGACCAATCTTGCTCCATATCCATTTCAATCCAATGTGAAAAAGC
TTGTGAATTAAAATTGATGAGAAAGCAAAGGATATCCATTCTTATTTAAA
AACAAAACCTTTATTCCGCTACTTGGAAGCAAACGGTCGATTTGCATAAG
GGAACACCTACTTTAGGGGTACAAACTTTCGCGATTTTTGCGAATTTTAG
CCCTTTTCGTGAAAGTAAATGTCTTTGAAAATTCCTTAGAGGGTAGTTCG
CGAAAGTTTATGCGCGCGAAAAAAAATCTCTGAAAAGAAAATTTACTTAA
ATTTTCCTCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013404-exon-sc0000167-1575043694:52008..52096 | TCONS_00013404-exon-sc0000167-1575043694:52008..52096 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1575043694:50500..50593 | TCONS_00013404-exon-sc0000167-1575043694:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1575043694:46784..47973 | TCONS_00013404-exon-sc0000167-1575043694:46784..47973 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1510915933:52008..52096 | TCONS_00013404-exon-sc0000167-1510915933:52008..52096 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1510915933:50500..50593 | TCONS_00013404-exon-sc0000167-1510915933:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1510915933:46784..47973 | TCONS_00013404-exon-sc0000167-1510915933:46784..47973 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1491911889:52008..52096 | TCONS_00013404-exon-sc0000167-1491911889:52008..52096 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1491911889:50500..50593 | TCONS_00013404-exon-sc0000167-1491911889:50500..50593 | Clytia hemisphaerica | exon |
| TCONS_00013404-exon-sc0000167-1491911889:46784..47973 | TCONS_00013404-exon-sc0000167-1491911889:46784..47973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:46784..52096 - |
Blast
The following BLAST results are available for this feature:
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