TCONS_00013403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013403
Unique NameTCONS_00013403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013403 ID=TCONS_00013403|Name=TCONS_00013403|organism=Clytia hemisphaerica|type=transcript|length=1401bp
AAAAAGTAGACCATTGCATTTTCAAAGTCGACCTCTAAAGAATTTTATCT
CtaattttcttacaaaaacCTCTTCCAATGCAAAAAGTGCAAATGGCAGA
TGACAGATAATAGACACATGAACACTGTTTCGATCATCAAGGCACTGCGA
TTTGGAAAGGATTGGGAAGATCAAAGAGGGTTACAAGTGCGAGTTGTTAA
AATTTCGAGAGACATTTTGGATTAATTGAATGCTGACTGTTATCTCCGGA
CCATAATTTATCACAAAGGATCTCAGGAAAGATGACGAGTATATACGTGG
ACAAAACGTTGTATCAAAATGTTGATTATGTTTTAAAAGAACTAcagaag
aaattcaaaaatcgaACTTTACGCATGTCGGATTTTGAAATTAATGTTTC
AAAACTTTGTGATGAAGATTTTTCTACAGAGGATCAAATGATGAGTAGCG
ACCTGGGAACGGACTTAGAATTAGACTTTGATGGGGGAGAaatcaaaatg
acgtcatcgaggAAAAGTACGTCACCTTTAGTTAAACAACTTTCAAAGGA
GGAAATGGAATTCCGAGATCACATGGAAACCATCATGTCGgtttttgaaa
acgaaacaaAACAATTAGATTCCAAGATAGACACAGAACGTAAACGAATA
CAGAAGAAATATCAAGCAAATTTGAACATCGAAGTTCAAAAACGAACATT
ACAATTAAACGAAACtattaaaaacttgaaaaatcgtATTGAAGTGCTTG
AAAGTGAAATGGACGAACTGGTTATAAGTTTCAAACAAGAGAAGAAAGGT
TTAGATGAACTTTATCAAAATGAAATGAAGAGAAAGTTATTACAATTGAA
GATGAATAATGACGATTGGCCTAAAACCAAAGTTTGAGTAGAACTATACT
CCAAGAAGTCATTTTGTGTCGAGGGGATTAAAAAATACATTCgagatttt
ttatgttttgttaaaggttttgtttttacataattgttaccgtttcatat
cagacacatatttcatatcaggacagtgtttgcctattgttttattatgc
tgatatttaagcaaaaaaataaatgtttattttttcctctttctgaccaa
tcttgctccatatccatttcaatccaatgtgaaaaagcttgtgaattaaa
attgatgagaaaGCAAAGGATATccattcttatttaaaaacaaaaccttt
attcCGCTACTTGGAAGCAAACGGTCGATTTGCATAAGGGAACACCTACT
TTAGgggtacaaactttcgcgatttttgcgaattttagcccttttcgtga
aagtaaatgtctttgaaaattccttAGAGGGtagttcgcgaaagtttatg
cgcgcgaaaaaaaatctctgaaaagaaaatttacttaaATTTTCCTCTTC
G
Run BLAST on NCBI

protein sequence of TCONS_00013403-protein

>TCONS_00013403-protein ID=TCONS_00013403-protein|Name=TCONS_00013403-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MTSIYVDKTLYQNVDYVLKELQKKFKNRTLRMSDFEINVSKLCDEDFSTE
DQMMSSDLGTDLELDFDGGEIKMTSSRKSTSPLVKQLSKEEMEFRDHMET
IMSVFENETKQLDSKIDTERKRIQKKYQANLNIEVQKRTLQLNETIKNLK
NRIEVLESEMDELVISFKQEKKGLDELYQNEMKRKLLQLKMNNDDWPKTK
V
Run BLAST on NCBI

transcript from alignment at sc0000167:46784..50980-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013403 ID=TCONS_00013403|Name=TCONS_00013403|organism=Clytia hemisphaerica|type=transcript|length=4197bp|location=Sequence derived from alignment at sc0000167:46784..50980- (Clytia hemisphaerica)
AAAAAGTAGACCATTGCATTTTCAAAGTCGACCTCTAAAGAATTTTATCT
CTAATTTTCTTACAAAAACCTCTTCCAATGCAAAAAGTGCAAATGGCAGA
TGACAGATAATAGACACGTAATTAAATCTACCAATTACCATTTTAATAAT
CGACGTATCCAATCTATTGTCTCAAAACAACCTCATCAAACTGTTAAACA
ATAGGTTCATACAATAGTCTGGTAATAATCAGCAACTTTTTTGAATAGAT
TCTCATTTATTCGATTTACCATGCGTTTTAGTCTAATTAAGCTTTTCTTG
TAATTTTTATCTTTCATAAAGAGACCGCTAATATTCAACATGTTTCGTCG
TATTTATTGAATTAGATGTGTTTTATTTTTATGGCAGATGAACACTGTTT
CGATCATCAAGGCACTGCGATTTGGAAAGGATTGGGAAGATCAAAGAGGG
TTACAAGTGCGAGTTGTTAAAATTTCGAGAGGTATTATTCTTTTTCCATT
TTTTTTAGCTTTTATCATTTCACGCAGCACAATTTTTCAAATAGATTTCA
CTTTAAATCCATCTTTTGTATGTATGAAAACTGTTTCAGAAGGGAGATAA
CTGGTTTTATTTTCCATCTGAGAGTTTCATCTCTCGGCCCTTCGGGGCTC
GATTTAGATTCGAACTGTGACGACGACAAGTTTTTTTTTCAATACAAGAA
CTTGTTTAAAAAATGGATTTTTTCATTACAGTGCAGTGGTTTTTGATTTG
ATATCTCTGTCTTTCTGGTCGTCAGAAGTTAGAAGAATATTTTCTTCTTT
TTGAAAAGTTTGCCTCCATTACTATGTAATGTAATTAGTATTATTTTACC
TGACCCCCATTATGCCGATTATCATAACATATTCTGAACTATCCTAAAAC
CTACTCCATTTAAATAAACCTGTACATGTTTTACTAATTTCTAACAACTT
TAGCCTGAAACGTTGGGCTGTAATTTGGCTAAAACCTTAGAACAAATTGA
GCCTCAGATTTCCAAAATTATGGATTTTTCCACCATTCCATTCATTAGAA
ACTCGAGAGTTTAAATGTTAAGGCCAATTTCGTCCTAAAAGTTTTTCTAT
AAGAACAATGTTTAAATACAAGTACAGTTGACGCTCTCTACTAGTTCGAC
GTTCTACTATTCGATAGGCTGCCTTATTCTGCCTTATTCGATGAAATTTA
AAGTCCCCGTCAACAGGAAACTCTCATAAACGACGCTCTCTTCTTCGATA
AGCTCCCTTCTTCGATGAAAATCCAATTCCCCTNACTTTGATGGGGGAGA
AATCAAAATGACGTCATCGAGGAAAAGTACGTCACCTTTAGTTAAACAAC
TTTCAAAGGAGGAAATGGAATTCCGAGATCACATGGAAACCATCATGTCG
GTTTTTGAAAACGAAACAAAACAATTAGATTCCAAGATAGACACAGAACG
TAAACGAATACAGAAGAAATATCAAGCAAATTTGAACATCGAAGTTCAAA
AACGAACATTACAATTAAACGAAACTATTAAAAACTTGAAAAATCGTATT
GAAGTGCTTGAAAGTGAAATGGACGAACTGGTTATAAGTTTCAAACAAGA
GAAGAAAGGTTTAGATGAACTTTATCAAAATGAAATGAAGAGAAAGTTAT
TACAATTGAAGATGAATAATGACGATTGGCCTAAAACCAAAGTTTGAGTA
GAACTATACTCCAAGAAGTCATTTTGTGTCGAGGGGATTAAAAAATACAT
TCGAGATTTTTTATGTTTTGTTAAAGGTTTTGTTTTTACATAATTGTTAC
CGTTTCATATCAGACACATATTTCATATCAGGACAGTGTTTGCCTATTGT
TTTATTATGCTGATATTTAAGCAAAAAAATAAATGTTTATTTTTTCCTCT
TTCTGACCAATCTTGCTCCATATCCATTTCAATCCAATGTGAAAAAGCTT
GTGAATTAAAATTGATGAGAAAGCAAACGATATCCATTCTTATTTAAAAA
CAAAACCTTTATTCCGCTACTTGGAAGCAAACGGTCGATTTGCATAAGGG
AACACCTACTTTAGGGGTACAAACTTTCGCGATTTTTGCGAATTTTAGCC
CTTTTCGTGAAAGTAAATGTCTTTGAAAATTCCTTAGAGGGTAGTTCGCG
AAAGTTTATGCGCGCGAAAAAAAATCTCTGAAAAGAAAATTTACTTAAAT
TTTCCTCTTCGATGAAAACAAGGATAAAATTTTTTGTAGATATTATGCAA
AAGTCCATCAATTGTGGTTTGAATACATTTAAGCGATCAAAACACTGGTT
TTCTCACCGAAAACTTGAATTTTCTACTAAAAATATTTGTCAAATTCGCG
AAAGTAAATGTCCTAGATTTCGCGATTTTTCTACCTCGCGAAAGTTTCTG
CTCGCGAAAGTTTGTACGCCTAAAGTATACAGATTTGAAGGTTTGCTTCC
ATAATGGCGGGATATTACGTAACTTAACAAAACACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAACTCTCATAAACGACGCTCTCTTCTTCGATAAGCTCCCTTCTTC
GATGAAAATCCAATTCCCCTTGAAGATCGAATTAGAGAGCGTCAACTGTA
TACGCAGGGTGATATAGGGGTGGTTGCTTATTAAAAGAAAAACATGTAAT
TGATTTCTGAAATTAATAAGAATAACGAAAACCTTGAAACATAATCTGGT
TTGTAAAATACAGTACACATCGAGTTCTTTAGAATTTTCTGTGGAACGGG
TTAGAAATTGATGTGCACTTTTTCAAACTCTTATTATTTGAGATTATCTT
TTCAGAGTACAGTATCATCATTATAAGTAAGGTAATTATCAACGATAGGT
TCTCATTAAAAGATTTCCTCTGATTAAACAAAAGCTTTTTTGATTACTTT
TTTTCAGACATTTTGGATTAATTGAATGCTGACTGTTATCTCCGGACCAT
AATTTATCACAAAGGATCTCAGGAAAGATGACGAGTATATACGTGGACAA
AACGTTGTATCAAAATGTTGATTATGTTTTAAAAGAACTACAGAAGAAAT
TCAAAAATCGAACTTTACGCATGTCGGATTTTGAAATTAATGTTTCAAAA
CTTTGTGATGAAGATTTTTCTACAGAGGATCAAATGATGAGTAGCGACCT
GGGAACGGACTTAGAATTAGACTTTGATGGGGGAGAAATCAAAATGACGT
CATCGAGGAAAAGTACGTCACCTTTAGTTAAACAACTTTCAAAGGAGGAA
ATGGAATTCCGAGATCACATGGAAACCATCATGTCGGTTTTTGAAAACGA
AACAAAACAATTAGATTCCAAGATAGACACAGAACGTAAACGAATACAGA
AGAAATATCAAGCAAATTTGAACATCGAAGTTCAAAAACGAACATTACAA
TTAAACGAAACTATTAAAAACTTGAAAAATCGTATTGAAGTGCTTGAAAG
TGAAATGGACGAACTGGTTATAAGTTTCAAACAAGAGAAGAAAGGTTTAG
ATGAACTTTATCAAAATGAAATGAAGAGAAAGTTATTACAATTGAAGATG
AATAATGACGATTGGCCTAAAACCAAAGTTTGAGTAGAACTATACTCCAA
GAAGTCATTTTGTGTCGAGGGGATTAAAAAATACATTCGAGATTTTTTAT
GTTTTGTTAAAGGTTTTGTTTTTACATAATTGTTACCGTTTCATATCAGA
CACATATTTCATATCAGGACAGTGTTTGCCTATTGTTTTATTATGCTGAT
ATTTAAGCAAAAAAATAAATGTTTATTTTTTCCTCTTTCTGACCAATCTT
GCTCCATATCCATTTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTG
ATGAGAAAGCAAAGGATATCCATTCTTATTTAAAAACAAAACCTTTATTC
CGCTACTTGGAAGCAAACGGTCGATTTGCATAAGGGAACACCTACTTTAG
GGGTACAAACTTTCGCGATTTTTGCGAATTTTAGCCCTTTTCGTGAAAGT
AAATGTCTTTGAAAATTCCTTAGAGGGTAGTTCGCGAAAGTTTATGCGCG
CGAAAAAAAATCTCTGAAAAGAAAATTTACTTAAATTTTCCTCTTCG

Coding sequence (CDS) from alignment at sc0000167:46784..50980-

>TCONS_00013403 ID=TCONS_00013403|Name=TCONS_00013403|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0000167:46784..50980- (Clytia hemisphaerica)
ATGACGAGTATATACGTGGACAAAACGTTGTATCAAAATGTTGATTATGT
TTTAAAAGAACTACAGAAGAAATTCAAAAATCGAACTTTACGCATGTCGG
ATTTTGAAATTAATGTTTCAAAACTTTGTGATGAAGATTTTTCTACAGAG
GATCAAATGATGAGTAGCGACCTGGGAACGGACTTAGAATTAGACTTTGA
TGGGGGAGAAATCAAAATGACGTCATCGAGGAAAAGTACGTCACCTTTAG
TTAAACAACTTTCAAAGGAGGAAATGGAATTCCGAGATCACATGGAAACC
ATCATGTCGGTTTTTGAAAACGAAACAAAACAATTAGATTCCAAGATAGA
CACAGAACGTAAACGAATACAGAAGAAATATCAAGCAAATTTGAACATCG
AAGTTCAAAAACGAACATTACAATTAAACGAAACTATTAAAAACTTGAAA
AATCGTATTGAAGTGCTTGAAAGTGAAATGGACGAACTGGTTATAAGTTT
CAAACAAGAGAAGAAAGGTTTAGATGAACTTTATCAAAATGAAATGAAGA
GAAAGTTATTACAATTGAAGATGAATAATGACGATTGGCCTAAAACCAAA
GTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007490XLOC_007490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013403-exon-sc0000167-1575043694:50864..50980TCONS_00013403-exon-sc0000167-1575043694:50864..50980Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1575043694:50500..50593TCONS_00013403-exon-sc0000167-1575043694:50500..50593Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1575043694:46784..47973TCONS_00013403-exon-sc0000167-1575043694:46784..47973Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1510915933:50864..50980TCONS_00013403-exon-sc0000167-1510915933:50864..50980Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1510915933:50500..50593TCONS_00013403-exon-sc0000167-1510915933:50500..50593Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1510915933:46784..47973TCONS_00013403-exon-sc0000167-1510915933:46784..47973Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1491911889:50864..50980TCONS_00013403-exon-sc0000167-1491911889:50864..50980Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1491911889:50500..50593TCONS_00013403-exon-sc0000167-1491911889:50500..50593Clytia hemisphaericaexon
TCONS_00013403-exon-sc0000167-1491911889:46784..47973TCONS_00013403-exon-sc0000167-1491911889:46784..47973Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013403-proteinTCONS_00013403-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:46784..50980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.74246	0.728345	0	0.691682	0	0	0	1.43537	0.577782	0.686347	0	0.417882	2.78272	2.60885	1.22968	1.54422	1.90236	0	2.05334	0	0	0	0	0	0	0.770323	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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