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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013394 ID=TCONS_00013394|Name=TCONS_00013394|organism=Clytia hemisphaerica|type=transcript|length=1254bp
ANGTGCAAAGAAACTTGtgatgtttgttttgaaaaagctGAAACGAAAGA
CTTGATACTGAACAAGGATGCGCTCAATTTATTGGATATCTTAGAAAATG
CGAAATACAAACAAGAAAGGCTAACTCCACTAAAGTTAGTAGAACTTTGG
CTTGGAAAAGGTAAAGTTTCACTACGCAAAAAGCAGGCGAGCTACCCAAA
AGAAATTTGCGAGTTGATCGTGGCGAAGTTGATAGCGGAACAGATCCTGA
CGGAAGATTTCCATTTCACACCGTACAATACCATCACTTACATTTTGCCG
GGTCCGAGAAAACATTTGGTCACCACGTTGAAAAAGCGGGGAGGAGATAT
TATCTTTCCGATACCGTGTAACAGTCAAATGGGAAAAGACGGATGCAAGA
AAGAAGATGATGAATCAACCAATCAGAGCACTAGAAAGCGTGTTTTAAGT
GAAAGTGATGACGAAAACGTGAAAGTTAAAATGGAAGAGGAATTTAAGGA
CTTAACATCACCAGTCACTTCTTCACTGAAGAAACAGAAAACGAACGCCA
TTATTATCGATTCGGACGATAATGATGAGGatgattttgttttataaacT
TATAAACTGTATTTATCCTTATAATGGAGTCAACGTAAGCATTAGTCTAT
TCATGCGAAGGGATCTTGTACCAATAGGTTGGAACAgaatggttttgttt
ttttgtattcACAGATTATTTAAAGGTActattttttaatcttttgtaca
ttttgtaAATAGAGATATTATATtgaggctcggaaaacacgagttaaaaa
acacgagttaaaaaacacgagttacgttaaatgtgacgtcatcaatggga
aattatgacgtcacaagtagatcatttaactcgtcaatttatggtgcgcc
ttaaactgacgagttaattaactcgtcaatttatggtgcaccataatctt
acgagttaattaactcgtcaatttatggtgcaccttaaactgacgagtta
attaactcgtcaatttatggtgcaccataatcttacgagttaattaactc
gtcaatttatggtgcaccataatcttacgagttaattaactcgtcaattt
atggtgcaccttaaactgacgagttaattaactcgtcaattaatggtgca
ccttaaatcatagaggtataaagaaaacaggagttgaatgtgtcggtaat
tggtcgttaaagtcttttgatttcttttataaaatgtatcaaaagaaatt
ctaa Run BLAST on NCBI transcript from alignment at sc0000167:348881..351226+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013394 ID=TCONS_00013394|Name=TCONS_00013394|organism=Clytia hemisphaerica|type=transcript|length=2346bp|location=Sequence derived from alignment at sc0000167:348881..351226+ (Clytia hemisphaerica)
ANGTGCAAAGAAACTTGtgatgtttgttttgaaaaagctGGTAAGTCTCT
TGAATCACCAACTCAAGAATAAAATGTAGATTAATTGATCTTCTTCTTTT
GCAACTCAGATCTTTTATAAATGATaaacgcaattttcagattcaaaagG
TCTAATCAATACAATATGCACAGGAATTACATTTTATAGTACCTAGTAGA
TATTTGTGTACagtcaaaatttgaataatttgtACTTTAATCTTTCTTCT
CGTTTCAGAAACGAAAGACTTGATACTGAACAAGGATGCGCTCAATTTAT
TGGATATCTTAGAAAATGCGAAATACAAACAAGAAAGGCTAACTCCACTA
AAGGTAACACTTTATTAAATTACCAGCAACTGAATATCCCTTCAAATACG
CTACTTGTATTCTATACTTTACCTTGGAATATGGGCTATTCTAGAAATAG
TCTGTAACCTCTATATTGAGGCGGTCTGACGTCCTAGATAAAAAAACAGG
GGGTCCCACTTTTCGGATGTGATAATCCAGGGTGGTCACTAAAATAAGGT
CGAAAATCTAGGGTGGTTGAAAAATGAGGACAAAAATCCTaggggtcctg
aaaaattgaaaaaagagtcCCGAAAAAGACCTCCCCAACATAGGTGGTAC
AAGTTTTTTTCTGGGTTACCCAAATAGTCGtaagttttagaaaaaaattt
tgtggtCATTTCATTGTTAATCATTGCATTATTTTCAGTTAGTAGAACTT
TGGCTTGGAAAAGGTAAAGTTTCACTACGCAAAAAGCAGGCGAGCTACCC
AAAAGAAATTTGCGAGTTGATCGTGGCGAAGTTGATAGCGGAACAGATCC
TGACGGAAGATTTCCATTTCACACCGTACAATACCATCACTTACATTTTG
CCGGGTCCGAGAAAACATTTGGTCACCACGTTGAAAAAGCGGGGAGGAGA
TATTATCTTTCCGATACCGTGTAACAGTCAAATGGTGAGTATAAAAAGTA
CTTCGGTTCTCCCTTTGTTGTTGGAAATTATCAgggttattattattttt
tttaattatcaatTTTCGCTTAATAGCAGATTCGAATTTGAAGCACAGTA
AAAAATCAGCCAAATTTAGGaaataacttttaagagtgaaattatcgaat
ttttcaaattttgttaacTCACTTTCTTTACTCACTTACAACGCATTTTT
GGAAGGCTGAAAAACTTATCCTTGAGGGCGCGGTCCGTACGGCTGGTTTT
CTTCGGGCATGGGATGGAATAAAATCACCGTTGTTACTTTAGTTTTCATG
TTAacactggcggatttaagacaatagagcaattACGTCAGAAACATGTG
AaggaaattacaattacaaatctattCATCTAATATGTTCGTCTGGGTCT
AtggttttaagtttttctttattGCGCTACGTACAACGACAAAATACCGT
AAATTTGTTTTAATATCTCACAGGGAAAAGACGGATGCAAGAAAGAAGAT
GATGAATCAACCAATCAGAGCACTAGAAAGCGTGTTTTAAGTGAAAGTGA
TGACGAAAACGTGAAAGTTAAAATGGAAGAGGAATTTAAGGACTTAACAT
CACCAGTCACTTCTTCACTGAAGAAACAGAAAACGAACGCCATTATTATC
GATTCGGACGATAATGATGAGGatgattttgttttataaacTTATAAACT
GTATTTATCCTTATAATGGAGTCAACGTAAGCATTAGTCTATTCATGCGA
AGGGATCTTGTACCAATAGGTTGGAACAgaatggttttgtttttttgtat
tcACAGATTATTTAAAGGTActattttttaatcttttgtacattttgtaA
ATAGAGATATTATATtgaggctcggaaaacacgagttaaaaaacacgagt
taaaaaacacgagttacgttaaatgtgacgtcatcaatgggaaattatga
cgtcacaagtagatcatttaactcgtcaatttatggtgcgccttaaactg
acgagttaattaactcgtcaatttatggtgcaccataatcttacgagtta
attaactcgtcaatttatggtgcaccttaaactgacgagttaattaactc
gtcaatttatggtgcaccataatcttacgagttaattaactcgtcaattt
atggtgcaccataatcttacgagttaattaactcgtcaatttatggtgca
ccttaaactgacgagttaattaactcgtcaattaatggtgcaccttaaat
catagaggtataaagaaaacaggagttgaatgtgtcggtaattggtcgtt
aaagtcttttgatttcttttataaaatgtatcaaaagaaattctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013394-exon-sc0000167-1491911889:348881..348920 | TCONS_00013394-exon-sc0000167-1491911889:348881..348920 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1510915933:348881..348920 | TCONS_00013394-exon-sc0000167-1510915933:348881..348920 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1575043694:348881..348920 | TCONS_00013394-exon-sc0000167-1575043694:348881..348920 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1491911889:349139..349233 | TCONS_00013394-exon-sc0000167-1491911889:349139..349233 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1510915933:349139..349233 | TCONS_00013394-exon-sc0000167-1510915933:349139..349233 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1575043694:349139..349233 | TCONS_00013394-exon-sc0000167-1575043694:349139..349233 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1491911889:349619..349864 | TCONS_00013394-exon-sc0000167-1491911889:349619..349864 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1510915933:349619..349864 | TCONS_00013394-exon-sc0000167-1510915933:349619..349864 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1575043694:349619..349864 | TCONS_00013394-exon-sc0000167-1575043694:349619..349864 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1491911889:350354..351226 | TCONS_00013394-exon-sc0000167-1491911889:350354..351226 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1510915933:350354..351226 | TCONS_00013394-exon-sc0000167-1510915933:350354..351226 | Clytia hemisphaerica | exon |
| TCONS_00013394-exon-sc0000167-1575043694:350354..351226 | TCONS_00013394-exon-sc0000167-1575043694:350354..351226 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:348881..351226 + |
Blast
The following BLAST results are available for this feature:
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