TCONS_00013389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013389
Unique NameTCONS_00013389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013389 ID=TCONS_00013389|Name=TCONS_00013389|organism=Clytia hemisphaerica|type=transcript|length=2073bp
GGAAACCGGATACACAAGATATGACTAACGAGTAGCAATAAAGAGATTAT
TCTATGACGTTGATTCCTGAATGACGTCATCCTTACATCTGTGCAAAACA
AGGAACAATCTGGGAAGACACCATCGATAACTTCTTCAACCAAGTTCGAC
CATGTGATCGATCAAGCATTACTTGAAAGTGAATTAAACAAAGTTGATGA
AGAATTTAACCGTATACAAAAATTGATCACAATTTGGGAAAAGAACTTAA
GAGTCTTATACAGCAAAGAAGAACTCCAGGACATCCTAAAGCAAGACCTC
ACTACGATACAAACAGAAACCAGCACATTGGAGCATGATCTTATTATTCT
ATCagaaaaatcaatatcattAAAAGACTTGATACCCAAAAATGCCAACA
AAGCTATCAAGAAAAAGATTAAGCAACTCAAGAAGACCATTCAGAAAGAA
CTTCAGAAAGGCTTGGTAAGACTGATTAACGATTTTGAATGCAAGTTGAA
AGAGAGATGTTCTCAAGATAGTCTTAAAGAAGCAGAATCGTCGTTTTTCA
GTAAAGTTAACGATATTGGAGAAGTCCATGAGCAATGTGATGATTTCACT
CAGGAGTGTGTGGACAGCTACAAGGAGATTTTAAACAAATTTGACGACTA
TACTAAAGACCATGTCAGCCCATTAAAAACCCAACTTCATGatctcaaaa
aatcaaaatgtagtCAATCAAAAACAATTCGTAAAACTTTGGAAAGTCGT
TTGAAATCTTTGGAAAAGAAAGTACAACATTGGATTGAGACCATTTTATC
AAAACTCAAGGAATTGATTGAACAAAAGCTGACACAGCTTAGTGATGGTT
CTAAATacaattttgatgttttgaatgGACTGAGACTTGATTCGAAAGAT
AAGAAAAAGGATCCTGATGCCCTTCAAGAAATTAAAACCAAAATGGTCAA
TCTAAAGCAAACATCAGTACAAAATTATAACGAGTTCAACCAAGTCTATC
AATACTTGTTCGAATTTAAGCATCTATTGGCAGACAATGAAAAAcagttc
aaaaaatatttcgaaatagTTACCAAACTTCGTTACGTGATCATTGGCTT
CCAAGCACAGATCGATGAATATTTAACAGTTCTCTTGAGGAAAATTAAAA
TGGCATCATTTGAGATTGATTCTGAAGAATTCGATAAAAAGTTGGAGGAC
TTCTTGTTGATGTTTGAAGAAGAGTTAAGAAAGCTTTTACAAGTTGGATT
ATCGGAAACTTGTTCCAAACTGAACGAATTCGAAACGACATTTGACGTGA
CTTTCAGAGAACAACTGGAACTTCTTAATAGCAATTATGAAACACTACAA
AATAATGAACTATCGTCAGAAGACCTTGACCAGGCTTATTTTGACACGAA
ATTATCGATTTTGAGCAAAAAGTTCGAAAAATTAACTCGAAATAATCAAT
ATCATGCTGATTTTGTCGAGATTTTCAAACATAAATTTTGTTGACTGGAT
GATTGGTACATACATGGataatttttaataaaagtcTATTCCGTACTTTT
TCTAACATTGCTATTGAGGGGTAAAGGATGCAGCTAAAAGTAATACTTCG
TtggaaaagataattttgagtagTTTGATGTAAGGATGCAAGCTTTGTTT
GTAGGTTGCTGAActtgaataatttgaaaatgaagaagaaaaaattgggA
TTTTTTAACTCGGTCAACAACTTTTAAATatatacttttttcaaaaactt
tggatccCATTGATGATTCTAAATATGTATTCTTCAGATTTTTTCACTTC
ACAACATTTTTCGTTACCGATACCGCTCGTTTCATGGATCATTGATGCCA
TCATTGGctggatttttagaaaatttgatatACGTTATGaaaatcatagt
cattataaaaaatcccggtctggaaggctttaGTTTCTTGCTATTACTAA
CAGTTAAAGCTTGCATATCTtaaattgatttgttttgcataccttttgat
catgtgattataAAATTAACCAATCTCAAGAGCTGAaatggtaacgtgat
caaaaagtatgcaaatcgcaaca
Run BLAST on NCBI

transcript from alignment at sc0000167:318211..324530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013389 ID=TCONS_00013389|Name=TCONS_00013389|organism=Clytia hemisphaerica|type=transcript|length=6320bp|location=Sequence derived from alignment at sc0000167:318211..324530+ (Clytia hemisphaerica)
GGAAACCGGATACACAAGATATGACTAACGAGTAGCAATAAAGAGATTAT
TCTATGACGTTGATTCCTGAATGACGGTACATTTCTTTTGATGAAGCACC
TGATGTTGTTTTTGCACCTCTATTCAAATCGGCATCTCTCCAAAGGTTAC
ATTTCGTCACGTCTTCACAACGCCTGAAGTTGACCTATATGACGTCAATA
CTACAACCAGATGGTTTTTCCTTATATGGTATGTTTGCTACCATATATGG
ACATTGGCAAATGAAAACTACTTCCTCCTTGATTACCTGATGTTTATATA
AAGACCAAAAGTTGTTTTAGCACTGAAAACTCAGAAATAGATACTATTTA
ACGAGAAAGCCCATAAGTGTAAAGGTGAATCGCATTGTCAATCTAAGTTA
TCAATTCATTATATCAGCTATTAGGAACTTTTCGAGAATGAAGACTTTTG
GATATGTTTCTTTATGGATGATCCTTATTTTAGTTTATCTTTCAAATATT
GTGAAATCTGAAGATGTATCTAAATCACGTAAGTTGTTAGGTATTTATTC
AAGTCACAATTTTAATCTTGGTCTTCGTTGAAGTCTTTATTCCATGTGCT
CTAATCAGATCGATTTGTCGCGTTATATATTTACATGGAATTTGTCATAT
GTGCATCTAAAATTTAGAAGTGGTTTTCttccaattttaagaaaattggt
GTATTTATTCAAGTCACAATTTTAATCTTGGTCTTCGTTGAAGTCTTTAT
TCCATGTGCTCTAATCAGATCGATTTGTCGCGTTATATATTTACATGGAA
TTTGTCATATGTGCATCTAAAATTTAGAAGTGGTTTTCttccaattttaa
gaaaattggtGTATTTATTCAAGTCACAATTTTAATCTTGGTCTTCGTTG
AAGTCTTTATTCCATGTGCTCTAATCAGATCGATTTGTCGCGTTATATAT
TTACATGGAATTTGTCATATGTGCATCTAAAATTTAGAAGTGGTTTTCTT
CCAATGAAGCTTGGTACTcacgtattaaaaaaaaagtggtgTTTAACACT
TTTTGCGTGCGTTTAACACTAGACTCGTGCGACTTTGGGAAAAACATCCA
AATGTACAAGAGTAATTATGTGAACTTAGTCCAGTACCATCTCTAGGTGT
GGACACTATCAttcattttcattgatttcattTCAGTCATCCTTACATCT
GTGCAAAACAAGGAACAATCTGGGAAGACACCATCGATAACTTCTTCAAC
CAAGTTCGACCATGTGATCGATCAAGGTAAACTTATGCAACCCTAATAAA
TACATCCTCGCGACTTTTGTTTAACAAATTGCTTActttcgggtacctaa
taagtgGGGGGGGAGTGGAAAagttctcaaaacttaataagcgggaggAG
GGGGCTGGAAAAGAAATGTCCTtggtggaaatttttttgaaaaggagcAG
AATTAGAGCAAAAGAGAGACCTTTtattttaaagacatttttctaaaaat
tgataAACGGGGAGAGGTTGAAATAAGAATATCCTGGGTTGtaaaatttt
cgagaaattaaTAAGCTAGGGGGACGCTCaataggtacccgagagtagac
tGTTCGAACATGCACGGGaacaaatttgttcaaattaagGAAAATTTCGA
ATAATGGAGATTTGTTCATAAAGCATTGTTATTAATGGAACAGAAAACAT
GTTTGAGTTGAGGAggcattcgagttaaagagaatcTAGTTTTGAAGCGC
CGAGACAAAAAACGGGCGTGAGTTGAACAAGATGGGAGGCTGATATATAG
GCCTCGAAAAAACTTAGTAAACACTGTTACCCCTTTTCACGGATCTtgta
atgtttcaaaatttctactCTCTATCACTGTTCCAATatcatttgctttt
tattttcataGCATTACTTGAAAGTGAATTAAACAAAGTTGATGAAGAAT
TTAACCGTATACAAAAATTGATCACAATTTGGGAAAAGAACTTAAGAGGT
ATGTTATATTTCTAAGTTCTAGTCCATCATTTAAATCATATCAGTATTAC
CTTATTAGTAGGGGGCTAGAAATACAGCCGCTTCAAGTTCAAAAGCATAC
TGACCTCAGTACtatcaagacaagatttgacgtcaaatcacagtagagct
gacagttagttggtcttaaagcgACTGTAttcctttgtgtgttttagtca
gagagttgttgtaatacaattttttgctcagaatttcattctctatcaga
tggtaccaatcattttcgtttattttgacttttgaaaataagctattcct
ctaccccttattttcccttgcagttttgccaatggcgtcactattttggt
cataaaaagttttcccgggcctaatccgcgtcctccctctcaaaaatatc
ttgtaatatactgttcttttgaatagactaaaaatggctaggtcgtagaa
aagatgtcacagaaccccaggcttggccccctactatatcggagtttttg
atttttctaaaaaaagcgatgcattgtgggattgtttcgagtgtattaca
atagaattccctcgaggaattcctaagagatttctattgtaatacactcg
aaacaatcccacaatgcatcgcttttttagaaaaatcaaaaactccgata
aggtctattatacaagaagttgatttctttctttcttcttctgtTTGTTT
CGGTACaatatattgagacagactttatttGTATTCATTCTGGTTAGCTT
cgtgtaagtaagtaagtctgcgaccgcagtcggtgGCGagccgaaggctc
ctctttcgatagctatctacccgaaggtaggggaagacgtcactctttct
ccctggattgctccacttacccttgactcTTCTCTTAATaatgctgagca
tcaagcagagaggcatgaaataccattttggaaatctttggtataacccg
gctgggggttgaacccacaaccttgcaaaCTGTAGCTGGATATCGTacta
cttcgaataaacgccccatTTTTTTAAACCTCCccttgaataaacgcccc
tttttGAGAAAAGACTTTGGATGAGTGCCCCCTCCCGCTCGATTAAAAGC
CCTTcctcaaaaccaaaacaaaaattgataaatgtcCGGGATGTTTATTT
GATGTTTGACTGGAAAAGTTCATGACAAATACACAATATAAGAAAGATTT
ACCTTTCGATATCCATTTTAGTCTTATACAGCAAAGAAGAACTCCAGGAC
ATCCTAAAGCAAGACCTCACTACGATACAAACAGAAACCAGCACATTGGA
GCATGATCTTATTATTCTATCagaaaaatcaatatcattAAAAGACTTGA
TACCCAAAAATGCCAACAAAGCTATCAAGAAAAAGATTAAGCAACTCAAG
AAGACCATTCAGAAAGAACTTCAGAAAGGCTTGGTAAGACTGATTAACGA
TTTTGAATGCAAGTTGAAAGAGAGATGTTCTCAAGATAGTCTTAAAGAAG
CAGAATCGTCGTTTTTCAGTAAAGTTAACGATATTGGAGAAGTCCATGAG
CAATGTGATGGTACGTAAGCGTCTTGTTTTAGCCTCTTTTGTTTCTACGT
TCGAGAGGATTAAAAAGTTTTGTCAAAGTgcaattttatcaaaagaaact
gaccaaaatttcaaggggTTAACAAATTATTCCTTAGTAAGATTTTGCAG
AATAATTACTGTGACAGGGATCTATGGATCACATTGCATGAGCTTGAAAT
TTGTACGAATCTATTTCCACCAAGCCAGGTTGGGTGTTCCTATTTTAGTT
TCTTCTTTATCTTAACCTTTATAGATTTCACTCAGGAGTGTGTGGACAGC
TACAAGGAGATTTTAAACAAATTTGACGACTATACTAAAGACCATGTCAG
CCCATTAAAAACCCAACTTCATGatctcaaaaaatcaaaatgtagtCAAT
CAAAAACAATTCGTAAAACTTTGGAAAGTCGTTTGAAATCTTTGGAAAAG
AAAGTACAACATTGGATTGAGACCATTTTATCAAAACTCAAGGAATTGAT
TGAACAAAAGCTGACACAGCTTAGTGATGGTTCTAAATacaattttgatg
ttttgaatgGACTGAGACTTGATTCGAAAGgtatttgatcatttttaacT
TAACTGAGAGCCAATTTATTAATACAAATCTTCATTCTTCATTTATGGGT
CAAAATAATGTCTAAACCCTAAAATGACACATTTCAGGATAGCATTCAGG
ACtgataatcaaataaatttatatatCCTTTCTCAATACTCCAATCATAT
ATTTCAAACCTTTTCTTGTTAACCAAAATGAAAGGAAATCTCATTTGTTG
AAGTTGAATCCAGGTCACTCCTATATCATTGGGATGAAATAGTAGTTCTA
GGATACACCTGTATTGATCGCAATGTGATGGTCACGGTTCGGCTGTTGTC
CTGATGCAGATGAATATAAAGTGTATTATATTTCTTCCGTTTAGATAAGA
AAAAGGATCCTGATGCCCTTCAAGAAATTAAAACCAAAATGGTCAATCTA
AAGCAAACATCAGTACAAAATTATAACGAGTTCAACCAAGTCTATCAATA
CTTGTTCGAATTTAAGCATCTATTGGCAGACAATGAAAAAcagttcaaaa
aatatttcgaaatagTTACCAAACTTCGTTACGTGATCATTGGCTTCCAA
GCACAGATCGATGAATATTTAACAGTTCTCTTGAGGAAAATTAAAATGGC
ATCATTTGAGATTGATTCTGAAGAATTCGATAAAAAGTTGGAGGACTTCT
TGTTGATGTTTGAAGAAGAGTTAAGAAAGCTTTTACAAGGTAATTTCATG
TTCATCCATCAATCATATAATCCCAAAAATCTTAATTTGATACTTTAGAA
CCTTTATAGTAACACTGACTGTTACTGACCAGTAGTGTGGTAGCAGGGGG
GAGCAACTCccaaaaaaattgcttttttacaTCCTAAAATTAgcagtttt
cagccaaaaagatgaaaaaaattatttcgctCGCGTGATTGTCacacaaa
tattttaatttttacttttaatatGGGGCGCCAAAACAACAACTTTGGAA
AATTGCTTCCCTAGTTTGCCTACTCTGAATCGCAGACCGAAGGTAGTATA
GTttatgctctctaattcgacgttctactattcgataggctcccttgttc
gatgaaatttaaagtcctcgtcaacaagaaactctcataaacgacgctcc
cttatacGATAGGCTCCCttgttcgatgaaatttaaagtcctcgtcaaca
agaaactctcataaacgacgctcccttatacGATAAGCTCCCTTGTTCca
tgaaaatccgattccccttCAGGACAAATTCGTCAGTGGATACAATCAGT
CTTATAGTTTGCCCCAATTTTGGTTGATCCACCACGCTACTGTAAGCTCT
TTTTCACCAAGCGCTCATTTTTTACTTTCTCCATTTTTAGTTGGATTATC
GGAAACTTGTTCCAAACTGAACGAATTCGAAACGACATTTGACGTGACTT
TCAGAGAACAACTGGAACTTCTTAATAGCAATTATGAAACACTACAAAAT
AATGAACTATCGTCAGAAGACCTTGACCAGGCTTATTTTGACACGAAATT
ATCGATTTTGAGCAAAAAGTTCGAAAAATTAACTCGAAATAATCAATATC
ATGCTGATTTTGTCGAGATTTTCAAACATAAATTTTGTTGACTGGATGAT
TGGTACATACATGGataatttttaataaaagtcTATTCCGTACTTTTTCT
AACATTGCTATTGAGGGGTAAAGGATGCAGCTAAAAGTAATACTTCGTtg
gaaaagataattttgagtagTTTGATGTAAGGATGCAAGCTTTGTTTGTA
GGTTGCTGAActtgaataatttgaaaatgaagaagaaaaaattgggATTT
TTTAACTCGGTCAACAACTTTTAAATatatacttttttcaaaaactttgg
atccCATTGATGATTCTAAATATGTATTCTTCAGATTTTTTCACTTCACA
ACATTTTTCGTTACCGATACCGCTCGTTTCATGGATCATTGATGCCATCA
TTGGctggatttttagaaaatttgatatACGTTATGaaaatcatagtcat
tataaaaaatcccggtctggaaggctttaGTTTCTTGCTATTACTAACAG
TTAAAGCTTGCATATCTtaaattgatttgttttgcataccttttgatcat
gtgattataAAATTAACCAATCTCAAGAGCTGAaatggtaacgtgatcaa
aaagtatgcaaatcgcaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007482XLOC_007482Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013389-exon-sc0000167-1491911889:318211..318286TCONS_00013389-exon-sc0000167-1491911889:318211..318286Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:318211..318286TCONS_00013389-exon-sc0000167-1510915933:318211..318286Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:318211..318286TCONS_00013389-exon-sc0000167-1575043694:318211..318286Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:319397..319486TCONS_00013389-exon-sc0000167-1491911889:319397..319486Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:319397..319486TCONS_00013389-exon-sc0000167-1510915933:319397..319486Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:319397..319486TCONS_00013389-exon-sc0000167-1575043694:319397..319486Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:320122..320208TCONS_00013389-exon-sc0000167-1491911889:320122..320208Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:320122..320208TCONS_00013389-exon-sc0000167-1510915933:320122..320208Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:320122..320208TCONS_00013389-exon-sc0000167-1575043694:320122..320208Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:321432..321770TCONS_00013389-exon-sc0000167-1491911889:321432..321770Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:321432..321770TCONS_00013389-exon-sc0000167-1510915933:321432..321770Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:321432..321770TCONS_00013389-exon-sc0000167-1575043694:321432..321770Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:322035..322340TCONS_00013389-exon-sc0000167-1491911889:322035..322340Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:322035..322340TCONS_00013389-exon-sc0000167-1510915933:322035..322340Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:322035..322340TCONS_00013389-exon-sc0000167-1575043694:322035..322340Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:322705..323049TCONS_00013389-exon-sc0000167-1491911889:322705..323049Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:322705..323049TCONS_00013389-exon-sc0000167-1510915933:322705..323049Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:322705..323049TCONS_00013389-exon-sc0000167-1575043694:322705..323049Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1491911889:323701..324530TCONS_00013389-exon-sc0000167-1491911889:323701..324530Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1510915933:323701..324530TCONS_00013389-exon-sc0000167-1510915933:323701..324530Clytia hemisphaericaexon
TCONS_00013389-exon-sc0000167-1575043694:323701..324530TCONS_00013389-exon-sc0000167-1575043694:323701..324530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:318211..324530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.043007	0.23535	0.150852	0	0	0.107273	1.99941e-09	0.213966	0.248617	0	0.925589	0.598863	0.458121	0.276062	0.414331	0.530169	0.400067	0.216778	0.566514	0	1.00399	1.21176	0.829274	0	1.24654	0.631684	3.24722	2.28447	0.267874	1.6573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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