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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013388 ID=TCONS_00013388|Name=TCONS_00013388|organism=Clytia hemisphaerica|type=transcript|length=3710bp
tttcagtaaaactaagaaaaataagtaaaaatcaaaattgaaatatgacA
ACCATTTTGGGCGAATGAGGAGTAATTGATCATTGTTTTGGCTTCATAGC
ACAATAACTAATATCCAACAAAATGACGGACCGTCCGCGGCGTGCGAACG
CGGGCAGTCGTATGACAAAACTGATTGAAGAAGCCCAAGACGAGGAAGAA
GGGGatgatttttataagaatacataTGGTGGTttcaatgaagatgaaga
agatcaAGATTATGTGTCTGAAGATGAACAAGAAGATATCATTGACTCTG
ATTTCAGTTTATCAGAACATGAAGATGACATTGAAAATAATGAAGATGAT
GATGACAAGAAACGAAGAAAacccaaaaagaaaatcaaaactttcaaaaa
agctacgaccgctgatgggactccgAAGGTTAAGAAACCGTCCGTTAAAA
GAGTTGTCGAACCAGTGCAACCTTTGGATAAGCAAGCACGTATGCGTAGT
ACAACCCTTCTGAAAGGTGCCGAACAAGCTAGAAAACAAAATGTACAGGG
TGCTGGTGGTATCAAAAGACATCCTAGAATGCCACAGATGAGACGCCTAA
CTCAAGAAGAACTTCTGGCAGAGGCAAAAATCacagaagaaaaaaataca
gCCTCGCTTGCTCAGTTTTTGAAAttggaagaagaaaagaaaaacgtcAA
AGTAACCAAGACACGCTACCAAGGACCGATCATTCGTTTTCAGTCAGTGC
GCATGCCTGAAATGGTTGAAATAATGGCTGAcgacgatgacgtcatcacc
gaAAATGATGAACAATTCTCTTGTCGAAATTTCTTGGAATTCACAGATAC
GAAGAGTTTTCCGAGAAAGTATTTCCCGTATCCTTCGAAAGTGAAATATC
CGGAAAAACAGGTTTGCGTTGTTACCGGGCGACCGGCGAAATATAAAGAC
CCGGTGACGGGGCTTCCGTACGCCACTATCGATGCTTTTAAATACATTCG
ACAACATCAGAAAAAGCTGCAAGAGAAATTAAGCAAACAGAGACTAGAAG
GTCGTGCGCGCAGACGGAAAAAGATGATTTCCGTATTTTAAAATGATACC
CTTAAAATGATGTGGCTCCCAAGTTACCATGGTTTTCAggtattttagtg
tttttgatACCATTGACTCGGTGTTAAGTAGGTTAAATAGGCTCATacat
tatatttattttatatcaCAAATTCTACTTACTTACTAGTACGTCCTGTG
TAAAAACTaggtttttaaaatacttttcaTTCATTGAAAAGATCAATTCA
TCTATGACATGTTTTCGAATtagttttttgaatattttacaaaaaaaaga
tCAGGCCAATTTTCGACTACTCTGTGTACCTGTCTGTACCAGAGCGTATC
TTAcgttagacgatcctatcgtctacacattttcactaaaacaggaAGCG
AGATAAATTTCGGGACGTATAATAGTTACTTATATCTTCTGGAGATATTG
GGTTTACAGTTAATTTATATAGCAGCGAAAAAAGTGATTTGGGAACCATT
TAAAGTCAATAGTCGGGGTTTATGGCCTTTAGTGTTTTAAGACGGAAGGT
TTTCCATTTCATTAGAATTCTTAGAATAATTGATAAATACTATTTACAAA
TAAATAACAGACTTACAAAAACTCGTATTCAAAAGAATACAATAGATACA
tcctaaaatctttaaaatctctTATCTTGTTACCGTCAGTCTCCGTTGCC
AAGATTTATCTTTCCTAGAGACCCAACTTTATTTTTCACCAACTAGTATC
CTTTTCCATTTAAGTTGACATTTTAAAAGTATTAATAATTATATGTGAAT
CGTTAGGTATAAGGTTACTTTGATCAGTGCAGTCCGGCGTTTCTTTACGG
TGTATTGTTGTCGAGAATCTCGAAGTCAAAATATCCTCACATTCCCTATC
TCCTGCGTCGCTCATGTCTCAAATCCAATGATACAATCAATCATAGATCA
AACAGGGTTATTTGGAAACATTTCTTGCCATTCTAATTTCAAATGTTGTT
TTTCACGTTCGATCATAGACATATCATGCAGAATTTTCTTGATCTCCTCC
CCTGAGCTATTTTCCTCGTTTTCCGCCACAACCAAAGAGTACTTCAGATT
AATAAACTCAATCTCCTTCTCGTAGATATGACTTCGTAAACGAAATTGGT
TCTTCATAGCTTGAATCTCAGCCTCCTTTTCCTGGTTATTGTTCTCGTCC
GCTGCGGTCTCGTCCGGATCTAAAAACTTACGTGAACGCTCAACCGATGA
TAAAAGTTCAATTTGTCGAGTCAGTGAATCATTTTCGACTTTCTTTGCTT
CAAGTTCCAAAGCATGCGTTGTTTTAAGTGCTTTGATTTGTTGTTCCAAA
TAATTGACCTTATTCTTGTGGTCACTCGCCGCGCTCTCAGCGCGTTTGCT
ACTCGACGATTTCATACGGTCAACTCGAGCCTGTAATAAGGATTTTTCAC
GTtctaaggattgcactgttgaTCTCTCACGCTCTAATTCTTGCGATTTC
TCACGAAGTTCGTTTTCAATTCTTGATCGATCTTTCATGTAGacttgaaa
tttgtttttggttgtgTTCAATTCTGCTTTAACACGTCCTTCCTCCTCGG
TTAGTTTATCTAACTGTAATTTCAATAACACGATCTCCTTCTTATGCGTA
CCCTCCATCGTTGAATCATAATCACTAGCTGTTGAACTTTGTGATTCAAA
CATTTTATTCCGCTTGCGTAACTCATTCCTCAACGCATCCATTTCAGCTC
GGAGTTTTATAGATTCGGTATAGTTCTCTGTTACCTCACTCAAAGTCTCA
TTTTCTAGTTTAGCCAACTTGGTACGTAAAATTTGGTTTTCGTTCTTCAT
TCTCTTGCTTTCCTCAATCACGTCTTCCCCGTTCAATTCATATTGCTTCA
AAGCGCGCGCCAACTCTGCTTTCTTTTCTTCTAAACTACGATTCGTTTTA
CGAAGTTCATTCAAGAGTTCTTTCACTGTCGCCATTTCAACATTTAAACT
TCTGTTCTCCTcgattaatttttctttctctcgtCTTAATCCATCAGCTT
TATTGCGACTTTCGACGTATTCCCCAATAGCACGATCTCGCTCCCGCTCC
AAATTTTGTTTAAGTCCCTCAAGACACTGTGTTTCACCTTTGTATCGATT
TAACTCCTGGTTTACACTAGTATACAACCGTTTAATTTCATCCAAATCGC
TCAACAACTCGGTCTTCGTTTTTAACAAATCTCGATTCTTTTCTTGACTG
GAACCCAATTCTTTCTCAAGCCCATTCTTCTTATCTGCCACGACTTGCAG
TTCTCTACACAGCCTTTCAATTTCAGTATTCCTCTGATCTAGAGCCTTTT
GAGCGCTCATATTCTCATGTTTCAAACCATCAGCAGTCAACCTGAGCTCA
TCCCTCTCCTTCTGGACCACCTGTTTCTCAACATCTTGAGTGACCAGATC
ATTCTCCTTTTCGTCGAGTCTTGAGAAAGCCTCAGTTAGATTCTGATTCA
TTTCGTCAACTTCATGTTTGAGGCTGTTAATTTCGTTCTCTTTCTTTGCT
AACTGGTTTTTCAAATCTGTATTTTCTTTACCAGTTTCGTTCTTCTTCCG
TTTGTTGTCTGGAAAGTAAACAGAAATCAACCGTAAAgtgaccgtagtgc
agtggtagag Run BLAST on NCBI transcript from alignment at sc0000167:302791..307849+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013388 ID=TCONS_00013388|Name=TCONS_00013388|organism=Clytia hemisphaerica|type=transcript|length=5059bp|location=Sequence derived from alignment at sc0000167:302791..307849+ (Clytia hemisphaerica)
tttcagtaaaactaagaaaaataagtaaaaatcaaaattgaaatatgacA
ACCATTTTGGGCGAATGAGGAGTAATTGATCATTGTTTTGGCTTCATAGC
ACAATAACTAATATCCAACAAAATGACGGACCGTCCGCGGCGTGCGAACG
CGGGCAGTCGTATGACAAAACTGATTGAAGAAGCCCAAGACGAGGAAGAA
GGGGatgatttttataagaatacataTGGTGGTttcaatgaagatgaaga
agatcaAGATTATGTGTCTGAAGATGAACAAGAAGATATCATTGACTCTG
GTATggtcaattttcattttcagatttttttttcacatctTGATTCAACC
TATTTCGTTGTAATTTCATCCCTTTGAAAACCTTTAACGAAAACCTGGCC
GCTATACCATTTTAACAATCAGCACCTTGCATAATGAAAAttatatacag
ttgactctcgctaattcgaactcgaatgtggaatcttatttgttcgaatt
atagggAGATTCGAACTATAGAAATTTTACGAGGGTTTCTCCTTAACGGA
Gactggaaataagtttgaattacagaaagattcgaataaaagaagttcga
TTAAGCGAGAGTTTAATCAAGGAACTTCTATGATTAAAGattcaaaaatt
ctaaagcGCTGATATATCAATTTTATTAAGTAACCCCTCCGATCTGTTAC
GAAATTAAGGCTACAGCTTTAtcggaaaatttcaacttcatTGTCTATTA
ATGACTTTCTCAATCAGATTTCAGTTTATCAGAACATGAAGATGACATTG
AAAATAATGAAGATGATGATGACAAGAAACGAAGAAAacccaaaaagaaa
atcaaaactttcaaaaaagctacgaccgctgatgggactccgAAGGTTAA
GAAACCGTCCGTTAAAAGAGTTGTCGAACCAGGTTGGTCTTTGAAATCAA
TCTTTTTGTATGATTTTAGTTTTGTGCATTACAGTAGAGCCTCTTCGACT
CGAACATTTATAATCCTAATTTCTCCTCAACTTGAACAAGCTTCCTGGTC
TCTTTAGTTAATAATGCCCTATATGTATAAACCTTGATTTAGACCTCGAA
ATTTCCTTTCTCGAACTAAATTTTagtccccgtgcgtgttcgagttatgt
aGACTTCACTGTAATTCTGAACAGTGAGTAGTAGGTTTAAAGTTTCATAA
CAACTGAttccccaaaaaaaaatttcttgtgtTTCCTTATTATCACAGTG
CAACCTTTGGATAAGCAAGCACGTATGCGTAGTACAACCCTTCTGAAAGG
TGCCGAACAAGCTAGAAAACAAAATGTACAGGGTGCTGGTGGTATCAAAA
GACATCCTAGAATGCCACAGATGAGACGCCTAACTCAAGAAGAACTTCTG
GCAGAGGCAAAAATCacagaagaaaaaaatacagCCTCGCTTGCTCAGTT
TTTGAAAttggaagaagaaaagaaaaacgtcAAAGTAACCAAGGTAAGCG
AGTCTCATATTTTGAAGTTACTTTTTCAAAcgttctttgttttgtttttg
agtaaGATAGCTCTTTTAGAATAAGAATTGGTTGGAGAAAAAGTGACCAA
TTGCTCAGGTGACCGAGCTTTCCATAAGTAAGATTTCCCTGACGACTAAG
GGGGAATAGAAAGATGTTTAAATGTTTCACAATTTCATCAGTTACAGATA
CAATTGAGGAAGAATGTACTTTTCCGGAAAAACTACTCAtattttgttcc
aaaactcaGGAAAATACGTGCTAAGTCATTTCTTCTTTTGGACACTGTAG
ATCCTCTGTGAAATTTTAGTAGGATGACCTGGGATGACTAGCAATAGATC
GGGAAGTTTTTTTAAGATTCAAGAGTTCTTTTAACTAGAGTAACActcag
tcaactctctctctctctcttattcgaaccgctactattcgaatcttttt
ataatttgaactaAAATATTTGTCCCCTCGACCAGAGATTAGAATTAAGA
AAAttagagaaaaagtcaaccgTAACTTGATAGAAAATGTTCAACTTGAA
ACTTTATAGACACGCTACCAAGGACCGATCATTCGTTTTCAGTCAGTGCG
CATGCCTGAAATGGTTGAAATAATGGCTGAcgacgatgacgtcatcaccg
aAAATGATGAACAATTCTCTTGTCGAAATTTCTTGGAATTCACAGATACG
AAGAGTTTTCCGAGAAAGTATTTCCCGTATCCTTCGAAAGTGAAATATCC
GGAAAAACAGGTTTGCGTTGTTACCGGGCGACCGGCGAAATATAAAGACC
CGGTGACGGGGCTTCCGTACGCCACTATCGATGCTTTTAAATACATTCGA
CAACATCAGAAAAAGCTGCAAGAGAAATTAAGCAAACAGAGACTAGAAGG
TCGTGCGCGCAGACGGAAAAAGATGATTTCCGTATTTTAAAATGATACCC
TTAAAATGATGTGGCTCCCAAGTTACCATGGTTTTCAggtattttagtgt
ttttgatACCATTGACTCGGTGTTAAGTAGGTTAAATAGGCTCATacatt
atatttattttatatcaCAAATTCTACTTACTTACTAGTACGTCCTGTGT
AAAAACTaggtttttaaaatacttttcaTTCATTGAAAAGATCAATTCAT
CTATGACATGTTTTCGAATtagttttttgaatattttacaaaaaaaagat
CAGGCCAATTTTCGACTACTCTGTGTACCTGTCTGTACCAGAGCGTATCT
TAcgttagacgatcctatcgtctacacattttcactaaaacaggaAGCGA
GATAAATTTCGGGACGTATAATAGTTACTTATATCTTCTGGAGATATTGG
GTTTACAGTTAATTTATATAGCAGCGAAAAAAGTGATTTGGGAACCATTT
AAAGTCAATAGTCGGGGTTTATGGCCTTTAGTGTTTTAAGACGGAAGGTT
TTCCATTTCATTAGAATTCTTAGAATAATTGATAAATACTATTTACAAAT
AAATAACAGACTTACAAAAACTCGTATTCAAAAGAATACAATAGATACAt
cctaaaatctttaaaatctctTATCTTGTTACCGTCAGTCTCCGTTGCCA
AGATTTATCTTTCCTAGAGACCCAACTTTATTTTTCACCAACTAGTATCC
TTTTCCATTTAAGTTGACATTTTAAAAGTATTAATAATTATATGTGAATC
GTTAGGTATAAGGTTACTTTGATCAGTGCAGTCCGGCGTTTCTTTACGGT
GTATTGTTGTCGAGAATCTCGAAGTCAAAATATCCTCACATTCCCTATCT
CCTGCGTCGCTCATGTCTCAAATCCAATGATACAATCAATCATAGATCAA
ACAGGGTTATTTGGAAACATTTCTTGCCATTCTAATTTCAAATGTTGTTT
TTCACGTTCGATCATAGACATATCATGCAGAATTTTCTTGATCTCCTCCC
CTGAGCTATTTTCCTCGTTTTCCGCCACAACCAAAGAGTACTTCAGATTA
ATAAACTCAATCTCCTTCTCGTAGATATGACTTCGTAAACGAAATTGGTT
CTTCATAGCTTGAATCTCAGCCTCCTTTTCCTGGTTATTGTTCTCGTCCG
CTGCGGTCTCGTCCGGATCTAAAAACTTACGTGAACGCTCAACCGATGAT
AAAAGTTCAATTTGTCGAGTCAGTGAATCATTTTCGACTTTCTTTGCTTC
AAGTTCCAAAGCATGCGTTGTTTTAAGTGCTTTGATTTGTTGTTCCAAAT
AATTGACCTTATTCTTGTGGTCACTCGCCGCGCTCTCAGCGCGTTTGCTA
CTCGACGATTTCATACGGTCAACTCGAGCCTGTAATAAGGATTTTTCACG
TtctaaggattgcactgttgaTCTCTCACGCTCTAATTCTTGCGATTTCT
CACGAAGTTCGTTTTCAATTCTTGATCGATCTTTCATGTAGacttgaaat
ttgtttttggttgtgTTCAATTCTGCTTTAACACGTCCTTCCTCCTCGGT
TAGTTTATCTAACTGTAATTTCAATAACACGATCTCCTTCTTATGCGTAC
CCTCCATCGTTGAATCATAATCACTAGCTGTTGAACTTTGTGATTCAAAC
ATTTTATTCCGCTTGCGTAACTCATTCCTCAACGCATCCATTTCAGCTCG
GAGTTTTATAGATTCGGTATAGTTCTCTGTTACCTCACTCAAAGTCTCAT
TTTCTAGTTTAGCCAACTTGGTACGTAAAATTTGGTTTTCGTTCTTCATT
CTCTTGCTTTCCTCAATCACGTCTTCCCCGTTCAATTCATATTGCTTCAA
AGCGCGCGCCAACTCTGCTTTCTTTTCTTCTAAACTACGATTCGTTTTAC
GAAGTTCATTCAAGAGTTCTTTCACTGTCGCCATTTCAACATTTAAACTT
CTGTTCTCCTcgattaatttttctttctctcgtCTTAATCCATCAGCTTT
ATTGCGACTTTCGACGTATTCCCCAATAGCACGATCTCGCTCCCGCTCCA
AATTTTGTTTAAGTCCCTCAAGACACTGTGTTTCACCTTTGTATCGATTT
AACTCCTGGTTTACACTAGTATACAACCGTTTAATTTCATCCAAATCGCT
CAACAACTCGGTCTTCGTTTTTAACAAATCTCGATTCTTTTCTTGACTGG
AACCCAATTCTTTCTCAAGCCCATTCTTCTTATCTGCCACGACTTGCAGT
TCTCTACACAGCCTTTCAATTTCAGTATTCCTCTGATCTAGAGCCTTTTG
AGCGCTCATATTCTCATGTTTCAAACCATCAGCAGTCAACCTGAGCTCAT
CCCTCTCCTTCTGGACCACCTGTTTCTCAACATCTTGAGTGACCAGATCA
TTCTCCTTTTCGTCGAGTCTTGAGAAAGCCTCAGTTAGATTCTGATTCAT
TTCGTCAACTTCATGTTTGAGGCTGTTAATTTCGTTCTCTTTCTTTGCTA
ACTGGTTTTTCAAATCTGTATTTTCTTTACCAGTTTCGTTCTTCTTCCGT
TTGTTGTCTGGAAAGTAAACAGAAATCAACCGTAAAgtgaccgtagtgca
gtggtagag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013388-exon-sc0000167-1491911889:302791..303090 | TCONS_00013388-exon-sc0000167-1491911889:302791..303090 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1510915933:302791..303090 | TCONS_00013388-exon-sc0000167-1510915933:302791..303090 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1575043694:302791..303090 | TCONS_00013388-exon-sc0000167-1575043694:302791..303090 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1491911889:303558..303722 | TCONS_00013388-exon-sc0000167-1491911889:303558..303722 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1510915933:303558..303722 | TCONS_00013388-exon-sc0000167-1510915933:303558..303722 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1575043694:303558..303722 | TCONS_00013388-exon-sc0000167-1575043694:303558..303722 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1491911889:304039..304283 | TCONS_00013388-exon-sc0000167-1491911889:304039..304283 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1510915933:304039..304283 | TCONS_00013388-exon-sc0000167-1510915933:304039..304283 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1575043694:304039..304283 | TCONS_00013388-exon-sc0000167-1575043694:304039..304283 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1491911889:304850..307849 | TCONS_00013388-exon-sc0000167-1491911889:304850..307849 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1510915933:304850..307849 | TCONS_00013388-exon-sc0000167-1510915933:304850..307849 | Clytia hemisphaerica | exon |
| TCONS_00013388-exon-sc0000167-1575043694:304850..307849 | TCONS_00013388-exon-sc0000167-1575043694:304850..307849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:302791..307849 + |
Blast
BLAST of TCONS_00013388 vs. Swiss-Prot (Human)
Match: VPS72 (Vacuolar protein sorting-associated protein 72 homolog OS=Homo sapiens GN=VPS72 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.061e-20 Identity = 78/203 (38.42%), Postives = 102/203 (50.25%), Query Frame = 3
Query: 477 DKQARMRSTTLLKGAEQARKQ--NVQGAGGIKRHPRMPQMRR-LTQEELLAEAKITEEKNTASLAQFXXXXXXXXXXXXXXXRYQGPIIRFQSVRMPEMVEIMADDDDVITE--------------------NDEQFSCRNFLEFTDTKSFPRKYFPYPSKVKYPEKQVCVVTGRPAKYKDPVTGLPYATIDAFKYIRQHQKK 1016
D + MR +T AE R+ VQ G R + P R LTQEELL EAKITEE N SL + +LE +KK K + GPII + SV +P + E +++V E N R F+ F+D +F ++FP K P ++VC VT RPA Y+DPVT +PYAT AFK IR+ KK
Sbjct: 128 DSRKSMRQST----AEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDIEGLDPAPSVSALTPHAGTGPVNPPARCSRTFITFSDDATF-EEWFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKK 325
The following BLAST results are available for this feature:
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