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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013384 ID=TCONS_00013384|Name=TCONS_00013384|organism=Clytia hemisphaerica|type=transcript|length=1723bp
TAGATCTTTATGACTTCAGTCAAACACCAGAAGAGAGCAATTCATTCGCT
TTGAAACCCAAGACTGGGTCTGTAGCCAAAGTGAACAACACCAAGATCGC
TTTGTTTCGGTATGGTGAGGTTGTGCATGCTATCGATGAAAAGTGTCCTC
ATCTTGGTGGACCTTTACATATGGGTGACATTGAGAATATAGGCGAAGCT
AGTCTGCTGTGCGTCGTTTGTCCTTGGCATCGCTGGAAAATTGATCTCAC
TACTGGTAAAGTTAAAATGCCTTCACGAAGACAACCTGTTCGGAATCAAA
TTTACCCGACTCGAATCGATGAGGATGGATCGATTCATATCGGTTTCGAA
GAAATAGATaatcaatttttcgatggcgaggaaatggatttttaaaagta
aaaataaataagtATTGTTGAAAGAATAGATTAACAGGATTTTTTATTGG
ATACTCGCCGAACTGGAAGAAAttatataccttattacacgaatattact
aggcaagtattcaacggccttgaaattaacacgcaaggAATTAGcgcgat
ttttttttgctttgtcaaggacaccacggctggttttaattaagggggtt
tttattaacatttttcaattcgtgttaataaaatgactagtaatattcgt
gtaataagggaTGCTTTGGATGGATTTAACTTTGCTTGTTTTAGTGCAAC
TAGTTAAGAAGtacatttatcttttctttaAATTATATGACATTGTATAT
ACGTTTTTCACATGATGGACTTTATTCCATTTTAATGTTAGAATTTTAGT
AGTGAACATGTTCATTCccctctttgaaaaaatgtctaATTATCTTTAAA
ATCGGATTTTGTTTGAATAAAGTAGAAAAATTTCATTCCCTTATTTCATT
TTTCGTTCTATCAGCTCTTCCTTATCTTCTAACGATCATTCTGTTTCGAG
TGCTTAACATGTTTTTGTACAATACTTTCTTTTTCTTATTTTATTTATCG
CGTTTAACTTAATTTTCCCCTAAAATATTCTATTCTCGTCCCTTTTCCCC
TTCCCTTTTCTTCCATCTTTTTCCCAAATTTTTTTTTTGCATATAATTTT
GATAACACTTAAGTGTTCTCTGATCGACCTTTCCCCTGTGACCTGTGTCC
TGTTTCTAGTTTCTAACTAACTGGAAGTGATGAAAAATCTGAACTTTTGC
ATCCAAATCAAGTTTAGCTTCAAAAAAATTGCATTCTTTGGAAAACTGCA
CCACCTTCTCCAGTCTAAGCATTGTAAATCATTTCTAATCAACACGTTCC
CCAGCCCCTTTCCCAGTTTTCAGACCCAAACCCAAAAGCAAGTATACCTG
TACCTGTTCATATTTTTTGGCTCGAAGTTTTTTATTTTACAGGTAGAAAA
AACGATATGATATATTGTTATATAGATCCAAATGTTTTATTGCCAACTTT
ACTTGTGGTATGATTTTTAAGTATCTTATTTTGTACATTTGCTTATAAAC
TATTTTTATAATTTACTCTAGCTACTAGTATACGATTGAAAAAGGGAAAG
TTTTTATCGATTTTTTGTTAGAGAAAGAACAACTTTGTTATGGTTTTTCA
TTTTACGATTTTCTGTGTCATTCTGTGTTTTTAGTCCATACCACACACAT
TTAGTAACTTCGGAGAGATTTTAGATAATTTTTTTAGGTCACCCTTTTTA
AGCAAAACGTTAGGTAAGCATGC Run BLAST on NCBI protein sequence of TCONS_00013384-protein >TCONS_00013384-protein ID=TCONS_00013384-protein|Name=TCONS_00013384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
DLYDFSQTPEESNSFALKPKTGSVAKVNNTKIALFRYGEVVHAIDEKCPH
LGGPLHMGDIENIGEASLLCVVCPWHRWKIDLTTGKVKMPSRRQPVRNQI
YPTRIDEDGSIHIGFEEIDNQFFDGEEMDF Run BLAST on NCBI transcript from alignment at sc0000167:272704..275671+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013384 ID=TCONS_00013384|Name=TCONS_00013384|organism=Clytia hemisphaerica|type=transcript|length=2968bp|location=Sequence derived from alignment at sc0000167:272704..275671+ (Clytia hemisphaerica)
TAGATCTTTATGACTTCAGTCAAACACCAGAAGAGAGCAATTCATTCGCT
TTGAAACCCAAGACTGGGTCTGTAGCCAAAGTGAACAACACCAAGATCGC
TTTGTTTCGGTATGGTGAGGTTGTGCATGCTATCGATGAAAAGTGTCCTC
ATCTTGGTAAGTATCATGTTGATATCACATATATATggagatcagagatc
tgacctaaAGGAAAGGAAATGCTGGGGACTTCTCTTTTCGCCCAATACAA
TCGAAAGCCATTTTACACCCTTGTTTAAAAATCACAGTAGCCCAAAGTAA
CGCTTCTTTTATCGACttgcatattttttttaaagtaaaccCGATTTTGA
gcttatcatttttttaaatccagGGCTTATAGGTTGCTGATAAAGTTTGC
TTTGAAAGTTCACACAATAAATGAAATATTGGAGCTTTTAGACAGTAAAG
ACTCCATTGAATTACCTGTACTTTAATCATTCTCCTTTTCCGTTTCGAAC
AGGTGGACCTTTACATATGGGTGACATTGAGAATATAGGCGAAGCTAGTC
TGCTGTGCGTCGTTTGTCCTTGGCATCGCTGGAAAATTGATCTCACTACT
GGTAAAGTTAAAATGCCTTCACGAAGACAACCTGTTCGGAATCAAATTTA
CCCGACTCGAATCGATGAGGATGGATCGATTCATATCGGTTTCGAAGAAA
TAGATaatcaatttttcgatggcgaggaaatggatttttaaaagtaaaaa
taaataagtATTGTTGAAAGAATAGATTAACAGGATTTTTTATTGGATAC
TCGCCGAACTGGAAGAAATTATATACCTTATNgtatagtttgttcttata
aaaaacgtgtatcttttTTTCAATCATAGATCTTTATGACTTCAGTCAAA
CACCAGAAGAGAGCAATTCATTCGCTTTGAAACCCAAGACTGGGTCTGTA
GCCAAAGTCAATAACACTAAGATCGCTTTATTTCGGTATGGTGAGGTTGT
GCATGCTATCGATGAAAAGTGTCCTCATCTTGGTAAGTATCAAGTTGAAA
TCACATATATATggagatcagagatctgacctcaaggaaaGGAAGTTTTA
TACTGTTTTGTGTTACTTTGCAGGGGACTTCTCTTTTCGCCCAATACAAT
CGAAAGCCATTTTACACCCTTGTTTAAAAATCACAGTAGCCCAAAGTGAC
GCTTCTTTTATCGACttgcatattttttttaaagtaaaccCGATTTTGAg
cttatcatttttttaaatccagGGCTTATAGGTTGCTGATAAAGTTTGCT
TTGAAAGTTCACACAATAAATGAAATATTGGAGCTTTTAGACAGTAAAGA
CTCCATTGAATTACCTGTACTTTAATCATTCTCCTTTTCCGTTTCGAACA
GGTGGACCTTTACATATGGGTGACATTGAGAATATAGGCGAAGCTAGTCT
GCTGTGCGTCGTTTGTCCTTGGCATCGCTGGAAAATTGATCTCACTACTG
GTAAAGTTAAAATGCCTTCACGAAGACAACCTGTTCGGAATCAAATTTAC
CCGACTCGAATCGATGAGGATGGATCGATTCATATCGGTTTCGAAGAAAT
AGATaatcaatttttcgatggcgaggaaatggatttttaaaagtaaaaat
aaataagtATTGTTGAAAGAATAGATTAACAGGATTTTTTATTGGATACT
CGCCGAACTGGAAGAAAttatataccttattacacgaatattactaggca
agtattcaacggccttgaaattaacacgcaaggAATTAGcgcgatttttt
tttgctttgtcaaggacaccacggctggttttaattaagggggtttttat
taacatttttcaattcgtgttaataaaatgactagtaatattcgtgtaat
aagggaTGCTTTGGATGGATTTAACTTTGCTTGTTTTAGTGCAACTAGTT
AAGAAGtacatttatcttttctttaAATTATATGACATTGTATATACGTT
TTTCACATGATGGACTTTATTCCATTTTAATGTTAGAATTTTAGTAGTGA
ACATGTTCATTCccctctttgaaaaaatgtctaATTATCTTTAAAATCGG
ATTTTGTTTGAATAAAGTAGAAAAATTTCATTCCCTTATTTCATTTTTCG
TTCTATCAGCTCTTCCTTATCTTCTAACGATCATTCTGTTTCGAGTGCTT
AACATGTTTTTGTACAATACTTTCTTTTTCTTATTTTATTTATCGCGTTT
AACTTAATTTTCCCCTAAAATATTCTATTCTCGTCCCTTTTCCCCTTCCC
TTTTCTTCCATCTTTTTCCCAAATTTTTTTTTTGCATATAATTTTGATAA
CACTTAAGTGTTCTCTGATCGACCTTTCCCCTGTGACCTGTGTCCTGTTT
CTAGTTTCTAACTAACTGGAAGTGATGAAAAATCTGAACTTTTGCATCCA
AATCAAGTTTAGCTTCAAAAAAATTGCATTCTTTGGAAAACTGCACCACC
TTCTCCAGTCTAAGCATTGTAAATCATTTCTAATCAACACGTTCCCCAGC
CCCTTTCCCAGTTTTCAGACCCAAACCCAAAAGCAAGTATACCTGTACCT
GTTCATATTTTTTGGCTCGAAGTTTTTTATTTTACAGGTAGAAAAAACGA
TATGATATATTGTTATATAGATCCAAATGTTTTATTGCCAACTTTACTTG
TGGTATGATTTTTAAGTATCTTATTTTGTACATTTGCTTATAAACTATTT
TTATAATTTACTCTAGCTACTAGTATACGATTGAAAAAGGGAAAGTTTTT
ATCGATTTTTTGTTAGAGAAAGAACAACTTTGTTATGGTTTTTCATTTTA
CGATTTTCTGTGTCATTCTGTGTTTTTAGTCCATACCACACACATTTAGT
AACTTCGGAGAGATTTTAGATAATTTTTTTAGGTCACCCTTTTTAAGCAA
AACGTTAGGTAAGCATGC Coding sequence (CDS) from alignment at sc0000167:272704..275671+ >TCONS_00013384 ID=TCONS_00013384|Name=TCONS_00013384|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000167:272704..275671+ (Clytia hemisphaerica)
GATCTTTATGACTTCAGTCAAACACCAGAAGAGAGCAATTCATTCGCTTT
GAAACCCAAGACTGGGTCTGTAGCCAAAGTGAACAACACCAAGATCGCTT
TGTTTCGGTATGGTGAGGTTGTGCATGCTATCGATGAAAAGTGTCCTCAT
CTTGGTGGACCTTTACATATGGGTGACATTGAGAATATAGGCGAAGCTAG
TCTGCTGTGCGTCGTTTGTCCTTGGCATCGCTGGAAAATTGATCTCACTA
CTGGTAAAGTTAAAATGCCTTCACGAAGACAACCTGTTCGGAATCAAATT
TACCCGACTCGAATCGATGAGGATGGATCGATTCATATCGGTTTCGAAGA
AATAGATaatcaatttttcgatggcgaggaaatggatttttaaGATCTTT
ATGACTTCAGTCAAACACCAGAAGAGAGCAATTCATTCGCTTTGAAACCC
AAGACTGGGTCTGTAGCCAAAGTGAACAACACCAAGATCGCTTTGTTTCG
GTATGGTGAGGTTGTGCATGCTATCGATGAAAAGTGTCCTCATCTTGGTG
GACCTTTACATATGGGTGACATTGAGAATATAGGCGAAGCTAGTCTGCTG
TGCGTCGTTTGTCCTTGGCATCGCTGGAAAATTGATCTCACTACTGGTAA
AGTTAAAATGCCTTCACGAAGACAACCTGTTCGGAATCAAATTTACCCGA
CTCGAATCGATGAGGATGGATCGATTCATATCGGTTTCGAAGAAATAGAT
aatcaatttttcgatggcgaggaaatggatttttaaGATCTTTATGACTT
CAGTCAAACACCAGAAGAGAGCAATTCATTCGCTTTGAAACCCAAGACTG
GGTCTGTAGCCAAAGTGAACAACACCAAGATCGCTTTGTTTCGGTATGGT
GAGGTTGTGCATGCTATCGATGAAAAGTGTCCTCATCTTGGTGGACCTTT
ACATATGGGTGACATTGAGAATATAGGCGAAGCTAGTCTGCTGTGCGTCG
TTTGTCCTTGGCATCGCTGGAAAATTGATCTCACTACTGGTAAAGTTAAA
ATGCCTTCACGAAGACAACCTGTTCGGAATCAAATTTACCCGACTCGAAT
CGATGAGGATGGATCGATTCATATCGGTTTCGAAGAAATAGATaatcaat
ttttcgatggcgaggaaatggatttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013384-exon-sc0000167-1491911889:272704..272822 | TCONS_00013384-exon-sc0000167-1491911889:272704..272822 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1510915933:272704..272822 | TCONS_00013384-exon-sc0000167-1510915933:272704..272822 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1575043694:272704..272822 | TCONS_00013384-exon-sc0000167-1575043694:272704..272822 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1491911889:273699..273735 | TCONS_00013384-exon-sc0000167-1491911889:273699..273735 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1510915933:273699..273735 | TCONS_00013384-exon-sc0000167-1510915933:273699..273735 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1575043694:273699..273735 | TCONS_00013384-exon-sc0000167-1575043694:273699..273735 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1491911889:274105..275671 | TCONS_00013384-exon-sc0000167-1491911889:274105..275671 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1510915933:274105..275671 | TCONS_00013384-exon-sc0000167-1510915933:274105..275671 | Clytia hemisphaerica | exon |
| TCONS_00013384-exon-sc0000167-1575043694:274105..275671 | TCONS_00013384-exon-sc0000167-1575043694:274105..275671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000167 | supercontig | sc0000167:272704..275671 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008942 | nitrite reductase [NAD(P)H] activity |
| GO:0016491 | oxidoreductase activity |
| GO:0051537 | 2 iron, 2 sulfur cluster binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042128 | nitrate assimilation |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0042128 |
nitrate assimilation |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0051537 |
2 iron, 2 sulfur cluster binding |
| molecular_function |
GO:0008942 |
nitrite reductase [NAD(P)H] activity |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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