TCONS_00013380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013380
Unique NameTCONS_00013380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013380 ID=TCONS_00013380|Name=TCONS_00013380|organism=Clytia hemisphaerica|type=transcript|length=455bp
AAGAACATTGACAGCATTAAACTTGTCAACATATGATGAAGGAAAAATGA
GTGGGTTTTTACAGAAATGGCGATGAACGTGTCGAGGAAATTTATTCAGA
CAGACAGAGGGAATCAGAATCAAGTGATGAAGAAAAATCTGCACTAAATG
TAGCATCCTTGATGGTGGATAAATAAGTGACTGATAATGAATATGACAAG
GATATTGATACATACACAGATACTGAAACAGAATCGGAAAGTTCAAGTGA
TGAAGAAGAATCTGATACGGATCAAATTGAATACATTGGTGATCAAGTGA
TTTATTTTGATGGATAATCAGCATTCAAAAGATGTCCAAATTGAAGAAAT
GCTGTTAACTGGATGCTGGACATTTATGTTGCCATACGTTGAAGTTCTTG
AacgaaatttgaaatgataacaaCGTGATAATACTTCAAAAGACTGCCAT
CGGAG
Run BLAST on NCBI

transcript from alignment at sc0000167:242111..247533+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013380 ID=TCONS_00013380|Name=TCONS_00013380|organism=Clytia hemisphaerica|type=transcript|length=5423bp|location=Sequence derived from alignment at sc0000167:242111..247533+ (Clytia hemisphaerica)
AAGAACATTGACAGCATTAAACTTGTCAACATATGATGAAGGAAAAATGA
GTGGGTTTTTACAGAAATGGCGATGAACGTGTCGAGGAAATTTATTCAGA
CAGACAGAGGGAATCAGAATCAAGTGATGAAGAAAAATCTGCACTAAATG
TAGCATCCTTGATGGTGGATAAATAAGTGACTGATAATGAATATGACAAG
GATATTGATACATACACAGATACTGAAACAGAATCGGAAAGTTCAAGTGA
TGAAGAAGAATCTGATACGGATCAAATTGAATACATTGGGTATGTTTTGC
TTACGTTTTACTTGATCATGATATCCAATCTGTTTTTCCACTGGTTCTCA
ACTTcaattgagctagaatctgagaatgtatGTCTGTTAGTCAGTCAGTA
TGTCACCTCAATAAAACATTTGGACagactggagacttcaaaaatggtca
gatttggcttAAGTTTTGCTCACTTGTTCCTtgtgtgaatatctgggggt
gtttttgaaaatttacaattttgtaAGCAACAACATAATGGccttacttt
tttctttctttgtttggaTATGTgacaaaattatgtaaattcgTTCAACC
TTATCtggcagatgttttttttttatcgtTGTTgtagaaatctttgaaaa
tcggGAACTTTTTAACTGCAGTTATGTATGAGaccatttgatttgatttg
ttcTGAGCTAACCATAAACCTCTGTTAGCAGAGGTGCTAAAAACTTGGAG
CATGTGGCGGCAGGTCTGATagtattatcttttttctggaCCTGGTTAGC
TCGGTTGAAGTGTGCCAATGATTATAAGANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGTTATCTTTCAATTAGCAAAATGATTTCCTTTCTGATTTGATTTG
ATACACATGTTATGGATATAGCATGTGGCTCCCTAGATTTTGTAGAGGAG
GAGATCTCCTATAAACAACTTAACTTAGATTATTATGTTTTAATAGCTAA
AAAAAGacatgggtacgagctttttgcttatagtTATATAGGTAAATACT
TTTGAAACATGAGCAGTCATGTGTCCTACATACAGGTGACAGGGAGAGAT
TCATCCTCAAAATTTGGCTTTGCTTCAAAGTTTTACTAGCCAAAGGAATA
TTCTTGCTAAACATAAGATGATTATGTTTATATATTTCCTACTGTCTGGA
TTTCTGTCTCATTTGAATGGTTTAACTCTTTAAAATAATACacaaagaaa
taagaaaataacataagaaattgattaaagtttatgaaaatgtttgactt
cattttttgtttctatttattATCAACACTTGCCTTTAATTCATGGACAT
ATACCTAAACTTCCACttacattttcatttgtcaGATATTTTTATGATCA
GGCAGACAAAGTCAAGAAAATTGTGATAGAAAAACTAATATTTTGTAGTA
TGAGTGCATATTGCTTTGTGACTTGGTTTATTGTACACTCAATGATCGAT
ATATTTCATAtctaaaaaatttgggttggGAGACAAGATACATGGTGACG
ACGCGCCCCTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
AAGACATGAAGTTAGATAACTTATGATGAGAAATAATTTGAGaatgtttg
tctttgtttttctcttcatctgtctgtctgtctgtctgtaactTCAAAGA
TATTcggtttttttgggtgaaaccTGGGGTAGTTTTTGTTTTAACCAATA
GGTTTACAGTTTCTCCAGGCTTtgtcatttcaaaattccagaatcaTTCC
AAAATTGCACTcctaaaaagtactttaggcATGTGATGAGGAGTGCTATG
AATAACTTTAGTAGTAGAATCCAAATTTATGGCCTGTGTTTGATCGCACT
CCTCAAgaattttaggtgtgtgtgaaTCGTTAATTCAGACAACTGTGACc
caagtttttctttatacatACCATAGATACAACAGAACAtaaatttatct
ttaaaaagctctaaacactaaaataaaatcctccaaAAGCCAAAGCAAGT
TTGGAAACACAAAAATCCTTCCTCTCGCTAAGGCCGTCATCTtggtttga
aaatgtttaaatcaaAATGTATCATGGATTTCAGCGAATGGCAACATTTA
GTGGGAAAGAAGATTTGCTGACTATTAAgcagcctctataagaaactttt
tcgttaaacgatgagcagaagcctagagaCTTACAAAGACTTAAAAGGGa
gtcttttattttcaatttcctaAAGGGGGTTACCACTTAACAGGGGGGAT
TCCCATAAATATCTGTTCTCATGATAATACTTGAAAATAGTATTTATCAA
CCAGTACTATTGAATTATTTCCCCTTGATAATGATATTGTCAAACCTTTT
AACAATAAGCTTGTCATTCAAGGCTCCAGGGgactgaacaaaaaaattta
aggaAGTTTTTATGGGTGTTTTTAAGGAGATGTAAATCTGAACCTTTTCA
GTCTTGAACCCAAAAATTCAAACCTTCAGACAGACAGGAAATCTAGTACT
ATTATTCTGGAAAGATNGGGGGGGGCATGTTTCTATCATCATCACAAATA
TGAGGCACTATTCCTATCACTGTTATCCAACTTGTCAGATTGTCAtactt
tgaaattgaatttccTCTATTTAGCTTATTTAATTTCTTACTTAGACAAC
ATTTCAGGAGCCGTGCTTTCAATATGTGAGAGGACCTGCAATATTAGTTG
AAAATTCTTCTTGCACTTATGGTAAatgagaaagtgaaaaatatgacTTA
TTTTAACTGCTTCTGCTTActagtttgtttttaatttgattgTCTTGCGT
ACTTTTAATTGTGATTTGTTACATTCTAGTAAATTTGTGTTCCTTTGAAT
GAACTACTATAGCATTTTAATCTACGTTTTGTTGatacaatattttcaaa
ttgaagaaaaagtttgaatCAAATATTTGTAAtctgatttatttattttt
cactctAGTGATCAAGTGATTTATTTTGATGGATAATCAGCATTCAAAAG
ATGTCCAAATTGAAGAAATGGTAAAATTATTGTTTCTTGGCTTTAATGGA
ATATTACATTCTGCTGGGGGTCTCAAAAGGGGGTggcaaatgtttcattt
caggGAGATTCTGAAAAGGAGAAAGAAGGAGAGCATGGGAAAAAAGTTCT
GACAAAGCTCATACCATTTGCAGCAAATTTATTACTTAGCAGTTGAAAAA
TCGTGCATTATTGGTTTTAACTTACAAAGGGCTGAATCACTTTCTAAAAA
GTATGcatatttttaacaaaatttaagaataatggGCTAAACGTCTCAGA
GGGAGGGGCAAAAGATGTTTCCATTTTCTGGTTTGGAAGGTAATTTTTTG
GTTTACAGACATTGGAAAGGAACCTTTAGACCGgatgaaggaaaaaaaaa
attaaaattgaatttttttttttttcaaacttgaattaatggttgagaaa
ataaaagaaatgtgttTTGAGATACCAGAAAACAACGAAAGTTTTGTAGT
AGTTAACTTGTGTTAAGGGTGCCATTAAGGAAAGCATACAATATTGGAGA
GCTTTTGTTATTCCTTTCTATCGCATCATACCATATCATCCGATACGATC
AGTTCCATTGATATCCTGTGTGGCATTCTTGGTAGAATATTAAAACTATC
CATCATAACGCCTGCTTTTAACCATGCAGATCATGGCTTATGATTGAAGC
AATTCCCTTTCCATTTTAGCTGTTAACTGGATGCTGGACATTTATGTTGC
CATACGTTGAAGTTCTTGAacgaaatttgaaatgataacaaCGTGATAAT
ACTTCAAAAGACTGCCATCGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007477XLOC_007477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013380-exon-sc0000167-1491911889:242111..242399TCONS_00013380-exon-sc0000167-1491911889:242111..242399Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1510915933:242111..242399TCONS_00013380-exon-sc0000167-1510915933:242111..242399Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1575043694:242111..242399TCONS_00013380-exon-sc0000167-1575043694:242111..242399Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1491911889:246669..246730TCONS_00013380-exon-sc0000167-1491911889:246669..246730Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1510915933:246669..246730TCONS_00013380-exon-sc0000167-1510915933:246669..246730Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1575043694:246669..246730TCONS_00013380-exon-sc0000167-1575043694:246669..246730Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1491911889:247430..247533TCONS_00013380-exon-sc0000167-1491911889:247430..247533Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1510915933:247430..247533TCONS_00013380-exon-sc0000167-1510915933:247430..247533Clytia hemisphaericaexon
TCONS_00013380-exon-sc0000167-1575043694:247430..247533TCONS_00013380-exon-sc0000167-1575043694:247430..247533Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000167supercontigsc0000167:242111..247533 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.79265	4.1735	1.40047	0.905435	3.10561	1.66202	0	3.91474	4.40266	4.69508	7.45555	5.05166	2.74687	3.76188	2.157	2.03088	0.754327	4.26337	3.45088	3.25184	11.7079	9.78627	5.40142	8.19055	0	3.73169	9.44178	7.83388	7.27494	7.18637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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