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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013360 ID=TCONS_00013360|Name=TCONS_00013360|organism=Clytia hemisphaerica|type=transcript|length=3222bpRun BLAST on NCBI protein sequence of TCONS_00013360-protein >TCONS_00013360-protein ID=TCONS_00013360-protein|Name=TCONS_00013360-protein|organism=Clytia hemisphaerica|type=polypeptide|length=851bp MDLMKDIQPITSPDQIQHSSSDEDSNNLHNEAIKNMSNNPTARFTFPKIDRun BLAST on NCBI transcript from alignment at sc0000167:91061..98341+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013360 ID=TCONS_00013360|Name=TCONS_00013360|organism=Clytia hemisphaerica|type=transcript|length=7281bp|location=Sequence derived from alignment at sc0000167:91061..98341+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000167:91061..98341+ >TCONS_00013360 ID=TCONS_00013360|Name=TCONS_00013360|organism=Clytia hemisphaerica|type=CDS|length=25560bp|location=Sequence derived from alignment at sc0000167:91061..98341+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013360 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1) HSP 1 Score: 378.637 bits (971), Expect = 1.589e-114 Identity = 213/685 (31.09%), Postives = 354/685 (51.68%), Query Frame = 1
Query: 979 NILAVESPHNCTNCEDRELASARCLDCVENLCENCVTAHERIRQTKSHRIVSFEELQNNTVDESIRCP-------------------SFCKIHDREILKYFCESCDSAICRDCAIFEHREHNYLDLKEAVKSHGKQLLQLLGNTKQKVPILKNALDSILQVENNLQQRKEKIEESINQSVDSHIQLLEEKRKYLLQQAQDMTSAKDNVLQEQFKRLHFDLDNVVSSCEFVDNIVLYGNEAEFMDVKYFMLSRLHALSEHKIQLVPEENDVFCFSQNNQNLMTGTRDFGILTTSQAFAPFCFASERNETLIKTGYLSSFQVVLNNRNSERITHGGDDVSAAMVNTEGERIPVDVIDNQNGSYTIKYKVNAKTDHFLQVTLRGRPIHGSPFTISVSTGIDSLRIGPVLTWFGSNGVESNGKINEAYEPWGICCNSRDHVIVTDHNNHKIQIFDQNGKLLRQFGSRGKNDGEIWYPTGICVDKNDDIFVADHGNHRIQVFTPEGRFVRKIGGRGNMDGLFKGPCDIAIDLQNRLIVADRDNHRLQVLTVDGKFLFNIGSYGNSEGKFDSPRHLTITNGNHIIVSDSNNGRVQRFDENGQHLGILGKKGSNAGQFQCPAGLCTDTEDNLVVADFKNLDVQLFDKMGVFVKKIGE-----GVFSKPTSLCVTTSGNIFVADRGNHKIYLF 2961
+ L + PH C++C++ AS+RCLDC E+LC+NCV AH+R+R TK H I FC+ HD E+L +C++C ICR+C + H H+++ L+EA++ +QLL + +Q ++ +++ V ++ + + ++ + H + LEE+ LL + + + K L Q ++L +L+ + S+ V ++ G + + + ML+++ L + L P+E+D F+ +Q L + FG ++ S AFAP A+ G ++SF V+ + + E GGD +SA ++ +G +V D QNG+Y + Y+ + +H + VTL + I SPF + V +G + IG FGS G +S+GK+ PWG+ + ++IV D +N++IQ+F G +FG+ G G+ P G+ D + I VAD NHRIQ+FT EG+F+ K G +G +G F P D+A++ + +++V+D NHR+Q+ DG FL G G FDSPR + + H++V+D NN R+ + Q LG +G+ GQF P G+ D E ++VAD +N VQ+F+ G F+ K G G +P+ + +T G I V D GN++I +F
Sbjct: 189 SALLLRRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPGAAAAAQQLGLGPPFPGPPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTMGRHGGHSFIYLQEALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLARDRMLAQVQELKTVRSLLQPQEDDRVMFTPPDQALYLAIKSFGFVS-SGAFAPLTKATGDGLKRALQGKVASFTVIGYDHDGEPRLSGGDLMSAVVLGPDGNLFGAEVSDQQNGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEG-DSDGKL---CRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868 The following BLAST results are available for this feature:
BLAST of TCONS_00013360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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