TCONS_00013339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013339
Unique NameTCONS_00013339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013339 ID=TCONS_00013339|Name=TCONS_00013339|organism=Clytia hemisphaerica|type=transcript|length=436bp
TCTTAGTCTAAGTAACAGGTCCATGTAGTAAGATTGACGCGGATTTTACT
TGTTCTCAAGATATTTAGGTTTGAATATTCTATATATCCAAATTAGGCCA
TTaatatcctaactaggataCAAATTCTGGCCTAATTAGGCTAACATCCT
AGTTTGGCCatcatagcctaatttgcaatagttcctgacaTCCAGCCACT
TCTGTAATGCTttgtcagcaaaaaaaattcaatatgaAATGGTAGACGAA
AGCGTGAGTATATATGTATATTATACTTTCGTACTTTTTTATGTAAGCTT
GTAAATCAAACTTAtgtttattcagttttttgcGTGTAGTCATTTGTTTT
CTTGTGATTCTTATGATTTGATTAAAAGGGAGCTCCTCCAAGACCCTTCA
AAGgccttttttgacaaaaaaacaggtGCACAATTT
Run BLAST on NCBI

transcript from alignment at sc0000164:319708..320143

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013339 ID=TCONS_00013339|Name=TCONS_00013339|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at sc0000164:319708..320143 (Clytia hemisphaerica)
AAATTGTGCacctgtttttttgtcaaaaaaggcCTTTGAAGGGTCTTGGA
GGAGCTCCCTTTTAATCAAATCATAAGAATCACAAGAAAACAAATGACTA
CACgcaaaaaactgaataaacaTAAGTTTGATTTACAAGCTTACATAAAA
AAGTACGAAAGTATAATATACATATATACTCACGCTTTCGTCTACCATTt
catattgaattttttttgctgacaaAGCATTACAGAAGTGGCTGGAtgtc
aggaactattgcaaattaggctatgatGGCCAAACTAGGATGTTAGCCTA
ATTAGGCCAGAATTTGtatcctagttaggatattAATGGCCTAATTTGGA
TATATAGAATATTCAAACCTAAATATCTTGAGAACAAGTAAAATCCGCGT
CAATCTTACTACATGGACCTGTTACTTAGACTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007453XLOC_007453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013339-exon-sc0000164-1491911889:319708..320143TCONS_00013339-exon-sc0000164-1491911889:319708..320143Clytia hemisphaericaexon
TCONS_00013339-exon-sc0000164-1510915933:319708..320143TCONS_00013339-exon-sc0000164-1510915933:319708..320143Clytia hemisphaericaexon
TCONS_00013339-exon-sc0000164-1575043694:319708..320143TCONS_00013339-exon-sc0000164-1575043694:319708..320143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:319708..320143 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.312579	0.152407	0.545855	0.362838	0	0	0.200935	0	0.131702	0	0	0	0.210718	0	0.0925502	0.288347	0.118914	0	0.36868	0.356237	0.316056	0.465817	0.181207	0	0	0.149759	0.432675	1.37227	1.48622	1.10681
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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