TCONS_00013332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013332
Unique NameTCONS_00013332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013332 ID=TCONS_00013332|Name=TCONS_00013332|organism=Clytia hemisphaerica|type=transcript|length=761bp
ttttgatttgttttgtacattgtgtcgacatctcaggTTCATTTTCAGCT
GGCTTCACCAAgataagatatgaaatcaaactacactaTAAGGGTCAGAA
AAGTTCGCTAAAATGCacttttcactgctcaagggctGCACTATAAGGGc
tcgattttgaaagccatttttggCGGCATATACCGTcatttagaaatcga
gtgccccctggTGTCTATGTGCACTATCGTTGAATCTCGTTTTTTGAACT
CGAAAGGGGGATCTAATTTGTTTGAATTACGGAAAGACTCGAATCATAGA
AAGCATTTTACGGAGGATCTTTCCGACGGGAACTgtgaattagttcgaat
tatagaaagattggAATAATAGAagctcgaattagcgagagttcaTTGTA
TGTGCTAGCATACCTTACCAAAAAGGGCTTAAAATCAGCTTTTCCTTGGG
TATTTTTTTAGTTCTTCTGAGAGGTTCTTTGTTTCTTAAGCTTTGAATGA
AGCCATGAATTAGCTTAGAAATCTAAGTTAGTTTGCTTCAGTCAccagga
taaatctgatggtaagttgtgactgaataacagtattccaaggcaaactt
aaaatccgtaaatataaaaaagctttaaagcgccgaaaacgctatattga
tATTAGCTGTGTGTCCTAGCCTtctgaatacgggcttagttaactaggct
agtcATGAATAAAAACGTGTGCAAAACACGAAAAtgataaacataaaaag
ttGACCTATAT
Run BLAST on NCBI

transcript from alignment at sc0000164:25204..25964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013332 ID=TCONS_00013332|Name=TCONS_00013332|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at sc0000164:25204..25964 (Clytia hemisphaerica)
ATATAGGTCaactttttatgtttatcaTTTTCGTGTTTTGCACACGTTTT
TATTCATgactagcctagttaactaagcccgtattcagaAGGCTAGGACA
CACAGCTAATatcaatatagcgttttcggcgctttaaagcttttttatat
ttacggattttaagtttgccttggaatactgttattcagtcacaacttac
catcagatttatcctggTGACTGAAGCAAACTAACTTAGATTTCTAAGCT
AATTCATGGCTTCATTCAAAGCTTAAGAAACAAAGAACCTCTCAGAAGAA
CTAAAAAAATACCCAAGGAAAAGCTGATTTTAAGCCCTTTTTGGTAAGGT
ATGCTAGCACATACAAtgaactctcgctaattcgagctTCTATTATTcca
atctttctataattcgaactaattcacAGTTCCCGTCGGAAAGATCCTCC
GTAAAATGCTTTCTATGATTCGAGTCTTTCCGTAATTCAAACAAATTAGA
TCCCCCTTTCGAGTTCAAAAAACGAGATTCAACGATAGTGCACATAGACA
ccagggggcactcgatttctaaatgACGGTATATGCCGccaaaaatggct
ttcaaaatcgagCCCTTATAGTGCagcccttgagcagtgaaaagtGCATT
TTAGCGAACTTTTCTGACCCTTAtagtgtagtttgatttcatatcttatc
TTGGTGAAGCCAGCTGAAAATGAAcctgagatgtcgacacaatgtacaaa
acaaatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007446XLOC_007446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013332-exon-sc0000164-1491911889:25204..25964TCONS_00013332-exon-sc0000164-1491911889:25204..25964Clytia hemisphaericaexon
TCONS_00013332-exon-sc0000164-1510915933:25204..25964TCONS_00013332-exon-sc0000164-1510915933:25204..25964Clytia hemisphaericaexon
TCONS_00013332-exon-sc0000164-1575043694:25204..25964TCONS_00013332-exon-sc0000164-1575043694:25204..25964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:25204..25964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0710936	0	0.549386	0.352446	0.282682	0.0880991	0.242352	0.279845	0.350009	0.0681673	0	0.267267	0.315376	0.850426	0.159914	0.052476	0.0516338	0.0687885	0	0.0754774	0	0	0.138986	0.639503	0.316006	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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