TCONS_00013302 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013302
Unique NameTCONS_00013302
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013302 ID=TCONS_00013302|Name=TCONS_00013302|organism=Clytia hemisphaerica|type=transcript|length=1414bp
ataatATGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAA
GAAGGAGAGATCCACCTACATTGTCTTTCCTGTTATTCTTCATCatgtca
cATTTTCAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGTGTGC
AATACCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAGCAG
ATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACCAG
TGTTGAACTACTTACTCATTTAGAGgTTTGTCCAGCAAACGTTATTCATT
GTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCCAAGGTTCGTGAGCAA
TGGTTACCATTCCACGATGGGAATCCTGTAAGCGTTGAAGGACAACTTGA
TGTGGAGTTTGCTTTGGCTGATCAAGAAAGATTAAGAAAAGAATACAGAT
ATCGAATGATTAGAGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTC
GGGCGCATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGG
TGGCAAAACAGAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAA
ACAATGTTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAA
GCTGGTAACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTT
TGACGTTCCTGATACGTACTACACCATAAACCGGAGTGGTTCTAATACCA
ATTATAAGCAACAGATAATCACTGGGTCGGAACCCGTTAGTAAATCTTGG
CGTGAGGACGACGAAGATCCGCTCACGTTAGAGGAGATCGATAAGCGAAG
ACAGGTTTATGACGATTTAGGCTGTAAAGCTTACGGTGCCGGGCTCGGAT
TGAATATTAACGTTGAATGTTTGCCATCTTATTTTGATCAGTACCCGCTC
TACCGTTTCGCGTGCGGCTCGTTGTTCCGTAGAGATCAGTATAAATGGCA
TTGTCAAAATAGCCACGGTGATATTGGTTTCCATGTCAACGGCTGGCTCA
TGCAACGGTGCCCCCTCGCGCAGTATGGGTGCCCATACTCGCAATACCGC
TTTCAACCTAATGACCGCAGCGTCCGGTTTCTTAAAAGCTTTTCATGCTT
CACAGCGCCTTACAACGGTTTGAAGTTGACGAAAAAGACTGGGAATTCTg
aggatgttcttattttcgatTTGCCGAATGAacttttgatttatttattg
ttCTTCCTGGATAATTTATCTTTAAACTGTTTGGCGAAGACGTGTCATTT
CTTTCAAGACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCG
TCATTTGGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGAAA
GAGGATAAAAAGGT
Run BLAST on NCBI

transcript from alignment at sc0000164:310161..314170-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013302 ID=TCONS_00013302|Name=TCONS_00013302|organism=Clytia hemisphaerica|type=transcript|length=4010bp|location=Sequence derived from alignment at sc0000164:310161..314170- (Clytia hemisphaerica)
ATAATATGGAAAACATGACAACACAAATAAGCAATAAAACATCTGAAAAA
GAAGGAGAGATCCACCTACATTGTCTTTCCTGTTATTCTTCATCATGTCA
CATTTTCAAAAAATGTCCTATTGTGTACTGTTCCAACCAATGTGGTGTGC
AATATCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGAACAG
ATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGACNAT
CTTTGAATATTTTCGATCTTATGTGTGGCTCTGCCACCCATTCAACAAAT
GGTAAACTCGTCTGGTGAGTTGCCGGTTAACCACGTGCAACGTGGCCTGT
GTTTGGGGTTCACAGGTATTGGGATCTGCAGCCCATAACGTCCCCCGGTT
GTTTGGAAATATTTGGGCGCTATATTTTAACACCACCCTAATGAAATTAA
CAACCGCCCTCTAACCGCCCATTTGAAAATTGAAATTTGCGACACCCCTT
GAAAATCCTGGCTACGCCACTGCTTCCCTTTTAAGGTTTAAGTCTAGTCT
TAGTTGTTGTGTGTTTAGCCTTGAAACTGCTTCCATATAAGGCTAATATC
TCTTATTATTCTTTCCCTTTTGTTTTTTCTTGTACACTGGATGTATATCT
TTATGTTTATGTTAATAATAATTGGCCTTAAGATTTTGATTTGGTATTTA
CTGTTAGCCAATCACTGCTCCTAACTAACGTGCTCAGAGTAAGAATTTTT
TCTGGTGGGGTCTGGAAATCATCCTGATTATAAAAAGTATTTATTAAGGC
CACTTTTTTGTACATTTTAGGCGTTAAAATAGAAATGAAACAAAAGAAAA
GTATATAATATGGAAAACATGACAACACAAATAAGCAATAAAACATCTGA
AAAAGAAGGAGGGATCCACCTACATTGTCTGTCTTGTTATTCTTCATCAT
GTTACATTTTCAAACAATGTCCTATGGTGTACTGTTCCAACCAATGTGGT
GTGCAATACCACCAATGTAAAGAGAAAGAGCATGTTCATGTGTGCAGGGA
GCAGATTCGCCCATGTGTCAATAAGCTTTACGGATGTCCATTTGAAGTGA
CCAGTGTTGAACTACTTACTCATTTAGAGGTATGTGCAATAGAATAAATC
GATGAAAAGACACCAAATTACTTTTAGGTATTTATATTATGTTAATTTTT
TTGGACCTACCTCGTAGGTCCTTTAAATTAACCTTCGTTCGTCCGCCGTC
TATTCGTTCGCCTGTTACCTGCTTTTCTCAGGATCAGCCTATTAGTTTTT
TCTAATTGTTTGCATAGTGATGCCAAATGACAGTACCCAAAAAGTGATGG
AGCCCGACTTTTGAGAAAAAATGGGATTTTTTGGACATTGTGTGAAATTC
CAGTCCAAACCAAAAAATCCAGTAGTACCTGCTTTATTTGTATTTTACAG
ACCATAGAGATATTACAGACCATTCTCAAAATACTAATTTTCGTTCTGAA
TTAGCCAATACATGAAGTCTCAGTTTTAAGGCTATAACTCCTGACCACTT
GATTTAAAATATAGAATACTTTTAGAAGGTACCATAACCGTTGTCTAATT
CTCAAGTTACAAGCTTTTATGCCAGTTTGAAATTTTGGATTTTAAAATAA
AAGCTGACAATTTTCACTCTCTTATCAAAAATTGTTTCGTGCTGGAAAGT
TAACATTCTCCTTATTCGCCTACACAAGAGATTCTAAAAAAATAGAATAT
CTGCAGCACAGCTTCAATTTTTAGTTGGTCTGTACTGATCAGCTTTTTGA
ACCTACCTTGTGGTCCTACTATAAGTTAACCTGTGTTCGTTCGTTCGTTA
CCAGCCTTTCTCGAGATTAGCTCATAGGATTTTTTAGATTTTTAGCACAA
AGATTTAAAACGGTGATTCCCAAAATGCGATGGAGTCTAATTTCGAAGAA
AAAAATTATTCTGGTCGCCAGTGGTTTTTCGGGAATTCCTCGTGATTTTC
TCATTCGTTTTTATTGACGCAGATTGACGTTTTGTCTATTTTGAATTTAA
TGTTTTCTGTTGATCAGCCAGGTAGGTCCATAAAAGAATCACTTAGGTAG
GTCCATAAATGAATCACTTGTTATTGTTTTTTTAATTCAGGTTTGTCCAG
CAAACGTTATTCATTGTGCAGTCAATTGGAATAGGGCTCCTTTGTACTCC
AAGGTTAGTACAGCCCATCATATAATGTCTATCAGCCTCAGAAATTGTGT
GACAATTTTCTATTTATTCTCTAAAAAGCCCCTTTTAACTATGAAAATAC
TATCTTTGCTGGAAAATCGGGTTTTGGGTATACTTAGAAAGTTATACTCC
AAAAAGATGCCTTTTTTATCTATGAAATTCAAAGGATGAAAAAGTGGTGT
TTTAAGAGTAGATCTTCTTAAGTCATTTCTCATAATTTATCTTTAAGATA
CCGGCTTATGAAGTATTCTGTTTGGGTATTATATTGTAAAAGGTTGGAAT
GATAAAAAAGGGGTAATTGGACTATAAAGATAAAGAGAGACCTCCTTGCA
CGACCTCCTTGTATTAACCAATGCTCGAAATAATGATTATCTTTAGATTC
TTTTCACCGTGACTCAAATATCGATTTCTTTTTGTAATATTGGTAATTTT
GTTCTTGATTTTTCATCAGGTTCGTGAGCAATGGTTACCATTCCACGATG
GGAATCCTGTAAGCGTTGAAGGACAACTTGATGTGGAGTTTGCTTTGGCT
GATCAAGAAAGATTAAGAAAAGAATACAGATATCGAATGATTAGAGGTTA
ATAATGAATTTGTTGTATATGTTTGAGCTGAAATGGTCTTTGAAAATAAG
ACTTTCCTCATGATATGCAGGGTGTAACGGGCGGGACCTTCATAATCTTC
CAAGTCTTGAAAAGCTTGAGAAGCAGTATTTCTTTTACATAATAATCTTT
GTCTTGTTTTTGATGGGGTTTGGTACTTCAGCCTATTTTTTGTGGAGAAG
AAATCACAGTTCAAGCATTTTGTTTTGGGAAATATTCCATTATCATTGGA
TCTTTTTGTAGGTGCACGGAAACGTAGCAGTCTGAACAAGAAAGTCGGGC
GCATCGAAAAAACGCGAATCAAGGATCTGGAAAGACTTATCAGCGGTGGC
AAAACAGAGGCAGACATTCCGACAAGTGAAGCAAAAGACGAAGTAAACAA
TGTTTTCGTGACGTGCGATAAATTATTTCATGAAGAATTACACGAAGCTG
GTAACAAAGACCATGTATCCAACACTAACATCCGTGACTCTTATTTTGAC
GTTCCTGATACGTACTACACCATAAACCGGAGTGGTTCTAATACCAATTA
TAAGCAACAGATAATCACTGGGTCGGAACCCGTTAGTAAATCTTGGCGTG
AGGACGACGAAGATCCGCTCACGTTAGAGGAGATCGATAAGCGAAGACAG
GTTTATGACGATTTAGGCTGTAAAGCTTACGGTGCCGGGCTCGGATTGAA
TATTAACGTTGAATGTTTGCCATCTTATTTTGATCAGTACCCGCTCTACC
GTTTCGCGTGCGGCTCGTTGTTCCGTAGAGATCAGTATAAATGGCATTGT
CAAAATAGCCACGGTGATATTGGTTTCCATGTCAACGGCTGGCTCATGCA
ACGGTGCCCCCTCGCGCAGTATGGGTGCCCATACTCGCAATACCGCTTTC
AACCTAATGACCGCAGCGTCCGGTTTCTTAAAAGCTTTTCATGCTTCACA
GCGCCTTACAACGGTTTGAAGTTGACGAAAAAGACTGGGAATTCTGAGGA
TGTTCTTATTTTCGATTTGCCGAATGAACTTTTGATTTATTTATTGTTCT
TCCTGGATAATTTATCTTTAAACTGTTTGGCGAAGACGTGTCATTTCTTT
CAAGACTTGTGTTGCAGCATCGTTGATCGTGCCGGACTGGTTATCGTCAT
TTGGTGTAAGAAGACGTATGAGAAATGTGGATCCAGCTCGTGGAAAGAGG
ATAAAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007436XLOC_007436Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013302-exon-sc0000164-1575043694:314070..314170TCONS_00013302-exon-sc0000164-1575043694:314070..314170Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1575043694:313042..313215TCONS_00013302-exon-sc0000164-1575043694:313042..313215Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1575043694:311968..312030TCONS_00013302-exon-sc0000164-1575043694:311968..312030Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1575043694:311375..311501TCONS_00013302-exon-sc0000164-1575043694:311375..311501Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1575043694:310161..311109TCONS_00013302-exon-sc0000164-1575043694:310161..311109Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1510915933:314070..314170TCONS_00013302-exon-sc0000164-1510915933:314070..314170Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1510915933:313042..313215TCONS_00013302-exon-sc0000164-1510915933:313042..313215Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1510915933:311968..312030TCONS_00013302-exon-sc0000164-1510915933:311968..312030Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1510915933:311375..311501TCONS_00013302-exon-sc0000164-1510915933:311375..311501Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1510915933:310161..311109TCONS_00013302-exon-sc0000164-1510915933:310161..311109Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1491911889:314070..314170TCONS_00013302-exon-sc0000164-1491911889:314070..314170Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1491911889:313042..313215TCONS_00013302-exon-sc0000164-1491911889:313042..313215Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1491911889:311968..312030TCONS_00013302-exon-sc0000164-1491911889:311968..312030Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1491911889:311375..311501TCONS_00013302-exon-sc0000164-1491911889:311375..311501Clytia hemisphaericaexon
TCONS_00013302-exon-sc0000164-1491911889:310161..311109TCONS_00013302-exon-sc0000164-1491911889:310161..311109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:310161..314170 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5308	8.76153	3.12706	1.88714	5.03657	3.62151	4.4329	4.13578	3.13272	4.73527	4.69369	2.31211	3.35057	4.02652	2.21755	1.901	2.15239	3.11672	3.30176	4.88323	3.84259	3.2469	7.48866	5.91789	5.4156	4.47503	3.42666	3.3214	6.32987	5.88418
Blast
[Close]
BLAST of TCONS_00013302 vs. Swiss-Prot (Human)
Match: FBX30 (F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.609e-20
Identity = 62/185 (33.51%), Postives = 90/185 (48.65%), Query Frame = 3 
Query:  894 LGLNINVECLPSY-FDQYPLYRFACGSLFRRDQYKWHCQNSHGDIGFHVNGWLMQRCPLAQYGCPYSQYRFQPNDRSV-----RFLKSFSCFTAPYNGLKLTKKTGNSEDVLIFDXXXXXXXXXXXXXXXXXXXXXAKTCH------FFQDLCCSIVDRAGLVIVIWCKKTYEKCGSSSWKEDKK 1412
            LGL++ +EC+  Y   Q  ++ F CG LFRR ++  H +N HGDI   +NGW+ QRCPLA YGC YSQ RF P+ +       R L+SF     P     L +   N   VL     +   +                 C         +D+C S++   G+VI+ W K+ Y + G+SSW+  +K
Sbjct:  499 LGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEFSSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFG--VQPCVSTVLVEPARNC--VLGLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCGSLLQSRGMVILQWGKRKYPE-GNSSWQIKEK 678

HSP 2 Score: 80.8777 bits (198), Expect = 4.234e-16
Identity = 42/136 (30.88%), Postives = 67/136 (49.26%), Query Frame = 3 
Query:  114 CPMVYCSNQCGVQYHQCKEKEHVHVCREQIRPCVNKLYGCPFEVTSVELLTHLEVCPANVIHCAVNWNRAPLYSKVREQWLPFHDGNPVSVEGQLDVEFALADQERLRKEYRYRMIRGARKRSSLNKKVGRIEKTR 521
            C ++ C   CG  +H CK  EH  +C  +  PC+N  +GCPF +   ++  HLE+CPA+V+ C + WNR P+    R+ +        V    QLD+  AL DQ  L +  +   +        ++K   ++ K R
Sbjct:   28 CDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENL--SRDVDEVAQLDMALALQDQRMLLESLKVATM--------MSKATDKVSKPR 153
The following BLAST results are available for this feature:
BLAST of TCONS_00013302 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBX303.609e-2033.51F-box only protein 30 OS=Homo sapiens GN=FBXO30 PE... [more]
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