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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013296 ID=TCONS_00013296|Name=TCONS_00013296|organism=Clytia hemisphaerica|type=transcript|length=1846bp
GACAAAATATCTAAGTCTTTCATATATCATTGTTAATTAATAGGTCAACA
AGACTCATGAacctcaaaaacgttaaaaacgactgaattttaagaaataa
tcaTCAGGAGGGATTTTAAATGGAAgtatgataaaaaattattcataata
ccgtattacttcgaataaacgcctcccTTCTTTTAAGCGCCCCTCTTAAA
AtcgaaaaagttaaagtaaTACGGTACTCATTAGGCCCAATGTTAACTCT
GGTTCTCGCTAAAAACAATATATGCTCCTCAAAAGCTTTAGCTAGctgtt
ttctttggattttttaaagaaggcgtaAACATAAATCAATTCAGTTTAAA
AGTACTTTAATTTTAGCAGAAATGTACATATattgaaactttttaaaaac
ttaaTTAATTATTGAATTACTTAACATACAAAAAAGATACaggaaataaa
ttcaaaaaaaaattctctaaagaATCACACTTGGAGGTTGAAATAAGAAc
tcacaaaaatttcaaaacttataCTGTAAtggtacaaaataaaaacaaaa
tgttaaTAGTTTGAAAGAAGCTCAAAAAATCTGATAGATTATAATAAATC
CATCTGAACAAATCGAAAAATATGGTCGTCTAATTTCAAAATCCTAAGCG
TACTAGAGGCGTGTCACCTCAATTTTGGAAACAGTCTCCATTATTGTTCC
CAGATCTCAGCAATGTACATCCTTGGCACATGCTATGGTTTTCATGGGCA
CTGTCAAACCATCAAATGTTCAACTTCCATGAAGTcaaaattcattttca
tttttatctcatttttattTAGAGTCATCATCATTCTGGTGATCTTCTGA
GGTCCAAAGGGTCAAATTGTCACGTAATAATTGCATGATCAAAGTACTAT
CTTTGTAAGAGTCCTCGTTCAAGGTATCCAATTCAGCAATGGCAAAATCA
AATGCTTTTTTTGCCATTTCACAAGCTTTCGCATGATCATCTCTAATTTC
GTAATAAAAAACAGAGAAATTCAAAGCTAGTCCTAATCTGATTGGGTGAG
TTGGTTTCAAGACTCCACGCTCATTAATACCATCTGAGCATGTAGTGAAT
GCGTCCTTGTAAGCAGCTTCAGAATCGTTGATGTATGCCTCACCATCACT
TGGCGATCCAACTTCGGCAAGGTATCGGTAGTAGTCACCCTTCATTTTCA
AGTAGAATACTTTTGACTCAACCAACTTTTCAGCCTCGTCAGCATCGGTC
TCATTCTCTGCATCCGATGTTGCTTTTGGgatcaaaaactttgaaagtag
ATCTAAAACTTCTTTACAGATATcttgaagttctttttcaactttttcct
tGTACTTTGTTGCTAATTCCAGCTTCCTTTCGTTTCCTGTTTCTTTGGTT
TTTTGTTCAATACTCGAAATAACACGCCATGATGATCGTCGAGCACCAAC
AACATTTTTGTAAGCAACTGATAGAAGATTCCTTTCTTCTTGCTGGAGTT
TACCACCAATTTCAGTAACTTTTTTCATAGCGGCTGCCATATCCTCATAT
CGTTCGGCTTGCTCTGCCAATTTGGCATTAGCAACGAGTGTAGTTTTTTC
GTCAGGCATGGTAGCAAGATTGTACTTCTGATAATGATAATTCAATAATT
TTAGAGTTCGAAGTACTCAGCAGTCAAGTCTTTCCACTGTAACAGCATGA
ACAACTTTAGTTTTAGTTTGGGTGTTGGATGAAACATTGAATATAAATGg
ttctatttataaaacgaaatCTATTGGCTCGCGTCtctgaaatgaaccaa
tcaaatCGTTTTACAATACGTCACCGAAATGATGGAGGGAAAATCA Run BLAST on NCBI transcript from alignment at sc0000164:206990..208887- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013296 ID=TCONS_00013296|Name=TCONS_00013296|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at sc0000164:206990..208887- (Clytia hemisphaerica)
GACAAAATATCTAAGTCTTTCATATATCATTGTTAATTAATAGGTCAACA
AGACTCATGAACCTCAAAAACGTTAAAAACGACTGAATTTTAAGAAATAA
TCATCAGGAGGGATTTTAAATGGAAGTATGATAAAAAATTATTCATAATA
CCGTATTACTTCGAATAAACGCCTCCCTTCTTTTAAGCGCCCCTCTTAAA
ATCGAAAAAGTTAAAGTAATACGGTACTCATTAGGCCCAATGTTAACTCT
GGTTCTCGCTAAAAACAATATATGCTCCTCAAAAGCTTTAGCTAGCTGTT
TTCTTTGGATTTTTTAAAGAAGGCGTAAACATAAATCAATTCAGTTTAAA
AGTACTTTAATTTTAGCAGAAATGTACATATATTGAAACTTTTTAAAAAC
TTAATTAATTATTGAATTACTTAACATACAAAAAAGATACAGGAAATAAA
TTCAAAAAAAAATTCTCTAAAGAATCACACTTGGAGGTTGAAATAAGAAC
TCACAAAAATTTCAAAACTTATACTGTAATGGTACAAAATAAAAACAAAA
TGTTAATAGTTTGAAAGAAGCTCAAAAAATCTGATAGATTATAATAAATC
CATCTGAACAAATCGAAAAATATGGTCGTCTAATTTCAAAATCCTAAGCG
TACTAGAGGCGTGTCACCTCAATTTTGGAAACAGTCTCCATTATTGTTCC
CAGATCTCAGCAATGTACATCCTTGGCACATGCTATGGTTTTCATGGGCA
CTGTCAAACCATCAAATGTTCAACTTCCATGAAGTCAAAATTCATTTTCA
TTTTTATCTCATTTTTATTTAGAGTCATCATCATTCTGGTGATCTTCTGA
GGTCCAAAGGGTCAAATTGTCACGTAATAATTGCATGATCAAAGTACTAT
CTTTGTAAGAGTCCTCGTTCAAGGTGTCTNAATTGCATGATCAAAGTACT
ATCTTTGTAAGAGTCCTCATTCAAGGTATCCAATTCAGCAATGGCAAAAT
CAAATGCTTTTTTTGCCATTTCACAAGCTTTCGCATGATCATCTCTAATT
TCGTAATAAAAAACAGAGAAATTCAAAGCTAGTCCTAATCTGATTGGGTG
AGTTGGTTTCAAGACTCCACGCTCATTAATACCATCTGAGCATGTAGTGA
ATGCGTCCTTGTAAGCAGCTTCAGAATCGTTGATGTATGCCTCACCATCA
CTTGGCGATCCAACTTCGGCAAGGTATCGGTAGTAGTCACCCTTCATTTT
CAAGTAGAATACTTTTGACTCAACCAACTTTTCAGCCTCGTCAGCATCGG
TCTCATTCTCTGCATCCGATGTTGCTTTTGGGATCAAAAACTTTGAAAGT
AGATCTAAAACTTCTTTACAGATATCTTGAAGTTCTTTTTCAACTTTTTC
CTTGTACTTTGTTGCTAATTCCAGCTTCCTTTCGTTTCCTGTTTCTTTGG
TTTTTTGTTCAATACTCGAAATAACACGCCATGATGATCGTCGAGCACCA
ACAACATTTTTGTAAGCAACTGATAGAAGATTCCTTTCTTCTTGCTGGAG
TTTACCACCAATTTCAGTAACTTTTTTCATAGCGGCTGCCATATCCTCAT
ATCGTTCGGCTTGCTCTGCCAATTTGGCATTAGCAACGAGTGTAGTTTTT
TCGTCAGGCATGGTAGCAAGATTGTACTTCTGATAATGATAATTCAATAA
TTTTAGAGTTCGAAGTACTCAGCAGTCAAGTCTTTCCACTGTAACAGCAT
GAACAACTTTAGTTTTAGTTTGGGTGTTGGATGAAACATTGAATATAAAT
GGTTCTATTTATAAAACGAAATCTATTGGCTCGCGTCTCTGAAATGAACC
AATCAAATCGTTTTACAATACGTCACCGAAATGATGGAGGGAAAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013296-exon-sc0000164-1575043694:207965..208887 | TCONS_00013296-exon-sc0000164-1575043694:207965..208887 | Clytia hemisphaerica | exon |
| TCONS_00013296-exon-sc0000164-1575043694:206990..207912 | TCONS_00013296-exon-sc0000164-1575043694:206990..207912 | Clytia hemisphaerica | exon |
| TCONS_00013296-exon-sc0000164-1510915933:207965..208887 | TCONS_00013296-exon-sc0000164-1510915933:207965..208887 | Clytia hemisphaerica | exon |
| TCONS_00013296-exon-sc0000164-1510915933:206990..207912 | TCONS_00013296-exon-sc0000164-1510915933:206990..207912 | Clytia hemisphaerica | exon |
| TCONS_00013296-exon-sc0000164-1491911889:207965..208887 | TCONS_00013296-exon-sc0000164-1491911889:207965..208887 | Clytia hemisphaerica | exon |
| TCONS_00013296-exon-sc0000164-1491911889:206990..207912 | TCONS_00013296-exon-sc0000164-1491911889:206990..207912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:206990..208887 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019904 | protein domain specific binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0019904 |
protein domain specific binding |
Blast
BLAST of TCONS_00013296 vs. Swiss-Prot (Human)
Match: 1433B (14-3-3 protein beta/alpha OS=Homo sapiens GN=YWHAB PE=1 SV=3) HSP 1 Score: 313.538 bits (802), Expect = 5.726e-102 Identity = 164/257 (63.81%), Postives = 195/257 (75.88%), Query Frame = -1
Query: 839 MPDEKTTLVANAKLAEQAERYEDMAAAMKKVTEIGGKLQQEERNLLSVAYKNVVGARRSSWRVISSIEQKTKETGNERKLELATKYKEKVEKELQDICKEVLDLLSKFLIPKXXXXXXXXXXXXXXEKLVESKVFYLKMKGDYYRYLAEVGSPSDGEAYINDSEAAYKDAFTTCSDGINERGVLKPTHPIRLGLALNFSVFYYEIRDDHAKACEMAKKAFDFAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSEDH 1609
M +K+ LV AKLAEQAERY+DMAAAMK VTE G +L EERNLLSVAYKNVVGARRSSWRVISSIEQKT+ NE+K ++ +Y+EK+E ELQDIC +VL+LL K+LIP AT ESKVFYLKMKGDY+RYL+EV S + + +++S+ AY++AF + ++PTHPIRLGLALNFSVFYYEI + KAC +AK AFD AIAELDTLNE+SYKDSTLIMQLLRDNLTLWTSE+
Sbjct: 1 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTER--NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQP--------------ESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEIS------KKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQ 235
The following BLAST results are available for this feature:
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