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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013295 ID=TCONS_00013295|Name=TCONS_00013295|organism=Clytia hemisphaerica|type=transcript|length=1439bpRun BLAST on NCBI transcript from alignment at sc0000164:194385..199049- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013295 ID=TCONS_00013295|Name=TCONS_00013295|organism=Clytia hemisphaerica|type=transcript|length=4665bp|location=Sequence derived from alignment at sc0000164:194385..199049- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00013295 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 4.324e-27 Identity = 63/145 (43.45%), Postives = 98/145 (67.59%), Query Frame = 1
Query: 976 KWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGER-GNTGRVQLVNRN-VDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1404
+WL+ ++D ++ +++ +P + PER YEV+V+TG+V AGTDA+V++TIYGE G+TG L + + FE+ +TD F I LG L +I I HDNTG AGWFLDR+ IT+ ++ + +YF C +WL+ ++ DG++SR
Sbjct: 718 RWLARGKEDNEL--VVELVPAGKPGPERNTYEVQVVTGNVPKAGTDANVYLTIYGEEYGDTGERPLKKSDKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNN-EITYYFPCQRWLAVEEDDGQLSR 859 HSP 2 Score: 114.39 bits (285), Expect = 1.168e-26 Identity = 64/201 (31.84%), Postives = 102/201 (50.75%), Query Frame = 1
Query: 877 FQHDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPE-----------------------RVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNR--NVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1404
+HD WFL+ + + + T+ PC++WL++ EDD Q+ R L P+ P+ + V + TG + AGTDA+VFIT++G + +TG L + N D FER ++F ++ LG L ++ + HDNTG A GWF+D V + ++ S + F C +WL+K++ DG I R
Sbjct: 813 IRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALEQKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEV-DAPSLGKCMTFPCGRWLAKNEDDGSIIR 1012 HSP 3 Score: 112.464 bits (280), Expect = 4.654e-26 Identity = 63/189 (33.33%), Postives = 97/189 (51.32%), Query Frame = 1
Query: 883 HDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVV-YEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVN--RNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPK-EKWYFVCNKWLSKDDGDGEISRLVQATKSLDNL 1437
HD W LE +++ K + C +WL EDD ++ R + P R + Y V V TG++ GAGTDA+V++ ++G+ G+TG L N N D FE+ D F I+ + ++R+ I HD G +GW+LDRV + P+ + F C +WL KD DG++ R + + S L
Sbjct: 215 HDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVRELLPSDSSATL 403 HSP 4 Score: 109.383 bits (272), Expect = 4.308e-25 Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 1
Query: 883 HDGVERNQSWFLEEVSVKKY----ETKQTWVLPCKKWLSLYEDDCQVKRILKP----------------LPPEQARP-ERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQL--VNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRL 1407
H+ N W V +++ + +T PC +WL+ EDD + R L P + E P + V+Y V++ TG++ GAGTDA V+ITIYG+ G+TG L + FER D F I+ LG + +I + HDN+ + A W++++V I N D+ ++++ F+C +WLS DG + RL
Sbjct: 1102 HNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWN-DTNEDEFLFLCGRWLSLKKEDGRLERL 1298 HSP 5 Score: 105.531 bits (262), Expect = 9.031e-24 Identity = 65/181 (35.91%), Postives = 98/181 (54.14%), Query Frame = 1
Query: 871 VFFQHDGVERNQSWFLEEVSVKKYETKQT--WVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNT-GRVQLVNRN--VDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEI 1398
V +HDG W+L+ V V++ ++ PC +WL +DD Q+ R L P A + Y + + TGDV GA TD+ V+I +YG++ +T +V LV+ N D FER R D F ++ +G + R++I HD+TG A WFL V I K+ + F N+WL K+ DG +
Sbjct: 342 VRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVRELLP-SDSSATLKNFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQ-YTFPANRWLDKNQADGRL 520 HSP 6 Score: 100.908 bits (250), Expect = 2.501e-22 Identity = 63/175 (36.00%), Postives = 93/175 (53.14%), Query Frame = 1
Query: 886 DGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQL-VNRNVDTFERSRTDLFKIK-VKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISR 1404
DG+ WFLE + +K T + WLS + + + + E+ E Y V V T D+ GAGTDA+VFI I+GE G++G + L + N + FER+ TD F + LG L ++ + HDN G GW L V + + +S E ++F C+ WLSK +GDG+ R
Sbjct: 1549 DGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLVCEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKD-NSRDETFHFQCDCWLSKSEGDGQTVR 1722 HSP 7 Score: 96.6709 bits (239), Expect = 6.657e-21 Identity = 58/179 (32.40%), Postives = 99/179 (55.31%), Query Frame = 1
Query: 883 HDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPP-EQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRLVQA 1416
H V N+ WF E+V + T PC WL + D ++R L + + R ++ + + V T D++ AGT++ +FI IYG++G T + L+N N F+ + F+I++ LG+ +I + HD +GW L+R+T+ N+ + K+K+ F CN+WL ++ D EI R + A
Sbjct: 87 HGNVGVNRGWFCEKVVILCPFTGIQQTFPCSNWLDEKKADGLIERQLYEMVSLRKKRLKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTDEI-LLNPNNKWFKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLN-KDKYNFNCNRWLDANEDDNEIVREMTA 263 HSP 8 Score: 91.6633 bits (226), Expect = 2.624e-19 Identity = 49/144 (34.03%), Postives = 82/144 (56.94%), Query Frame = 1
Query: 883 HDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQARPERVV-YEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRV 1311
HD + SWFL V ++ + + P +WL + D +++ ++ P E +++V YEVE+ TGDV GAGT A V++ IYGE+G T + L +R+ FER+ D F+++ +G++ ++ + H GF WF+D V
Sbjct: 478 HDSTGMHASWFLGSVQIRVPRQGKQYTFPANRWLDKNQADGRLE--VELYPSEVVEIQKLVHYEVEIWTGDVGGAGTSARVYMQIYGEKGKTEVLFLSSRS-KVFERASKDTFQLEAADVGEVYKLRLGHTGEGFGPSWFVDTV 618 HSP 9 Score: 84.3445 bits (207), Expect = 4.879e-17 Identity = 50/169 (29.59%), Postives = 85/169 (50.30%), Query Frame = 1
Query: 883 HDGVERNQSWFLEEVSVKKYETKQTWVLPCKKWLSLYEDDCQVKRILKPLPPEQAR-PERVVYEVEVLTGDVRGAGTDAHVFITIYGERGNTGRVQLVNRNVDTFERSRTDLFKIKVKYLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDG 1386
HDG W +EE+ + ++L C WL+ D R+ L +V+YE+ V TGDV G GTD+++F+T+YG G+T +QL ++ FER + D F +++ + ++ I D G WFL+R+ + N ++ ++ + WLS+ G
Sbjct: 1420 HDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDRGDGITSRVFDLLDAMVVNIGVKVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQL-DKKKARFEREQNDTFIMEILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGD-WLSQRKG 1586 HSP 10 Score: 82.0333 bits (201), Expect = 2.883e-16 Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 1
Query: 1021 LKPLPPEQARPERVVYEVEVLTGDVRGAGTDAHVFITIYGERG--NTGRVQLVNRNVDTFERSRTDLFKIKVK-YLGKLQRILIEHDNTGFAAGWFLDRVTITNSDSPKEKWYFVCNKWLSKDDGDGEISRLVQATKSL 1428
L L P + P + Y V V TGDVRGAGT + +++ +YG RG N+G++ L F+R RTD+F I++ L L R+ + H N G GWF ++V I + ++ F C+ WL + DG I R + SL
Sbjct: 6 LNTLFPVVSTPA-ITYIVTVFTGDVRGAGTKSKIYLVMYGARGNKNSGKIFLEG---GVFDRGRTDIFHIELAVLLSPLSRVSVGHGNVGVNRGWFCEKVVILCPFTGIQQ-TFPCSNWLDEKKADGLIERQLYEMVSL 139 The following BLAST results are available for this feature:
BLAST of TCONS_00013295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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