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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013277 ID=TCONS_00013277|Name=TCONS_00013277|organism=Clytia hemisphaerica|type=transcript|length=1953bp
aacattttaagaacatttttaggcttcaaatccaaaaaaactaagaacat
ccgaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtaga
acgTATTACATAGTAAGTTTAAAAcaacctttttctttttcatcagaAAT
GTAGACGATGCGTTTTTGTTTTTAGTCAACACTGTTTTTACGTTTAAGCA
TTCTAATTAATGGTGTCTttgggccgtccatatagtacgtacgcaaagat
ttttcaaaaatttgataccccctccccccttgtacgcagagaacaataga
aaggaTGTCATTTagacaatagatgtacgctttgctaaacccccctctcc
ccccttcactgcgtacgtactatatggatggccccttaTGGCAAATCAAG
AACGATCAACGCGCGAGAAACAGTATTTTTTGTTCTGAAAAGTTTTTGTA
AGCTCGGTATTTTTTCATATCGGTTTAGACCTCACTTTTTATGCTGTCAA
TCTGGTTTTAATCATTAAAGATTGTAACACTCTTTTTAACTTTGAATTAA
ACTGTCTACATTTTGGttacgttaaatgaacgttatgaacattagataaa
cgttaaaacaactttgtgtgccagctgggtacatCTATTGTATTATACGG
TTTAAAATCATTGCGACGGGCCATTGGACCAAACCAATAAACGTGAATCA
TGCTTAATACACACTGTATTACAGTACACACTCTATTAATACACAATAAG
CATCTCATAATAACTCGTTTCCAAGCTCCTTTTTAAGCAATACGTCCAAT
TCCTGAGGTACATCCATCATCCACCCCGTGGTCCCATGATTCAGAAATGA
GTTTCTCACTAGCCGATTTCGTTAGTGAAATAGCTAAGAAACTCATCTCA
TAATCCCCATTCTTTTTACCAGCAGTGCGATCAGCATAAAATCTTGACCG
GGGTGCATTACTGTGCTGCTTATAGGTCATAAACTTTGCATGCATATCTT
TTGGATTTAAAACCGCATTAACATCACTAAGCCATGCTTTCAAACCAGTG
TACCAATCACCATAGCAACAAGGTAAACAATCCAAAGGATGTGACATTGA
TGTAGGACATAACAAAGCACAAAGAACAGTTTGTGCAATGAACCCAGGGC
AACAAAAGATGGTCAGACATCCAACAACAGAGGGGGCCTTCTTTTGTACT
TTCATCAAATCTATCATCCATTTTTTCCATTGATCTCCATTTATTCCTTT
CGTCGCCAATTGTTGAGGCACTTGGTTGATATTCTCAGGCCGAATACCAA
CCGTTTGCCATGGACAACAAGATACTTTCTCAAAATCAATAATAAGACGG
TTATCTTTAACCACATAATAGATCAAGCCAGAACCAGCTTGAGTATCAAC
ACTGGAAGATGACCCCTCTCCTGTGGCAATGAAGGCAGGGTTCACACCAC
CACCTGTTGGTTGCTTAGTGACTGGCTCTGGTTGTTTGGTATTGACTAGC
TTAGGAGGAGTATGATTTCCTGGTTGAACAACCACATGATGCGGTAAAGG
AGGAGCATTTCCTGGTTGAGGAGTAACATAATAGGATTGTGGAGCAGGAA
TAACATTATTCCCACATGAAGTACAATGGTAAACAGCTGGGTTCATGTCC
ACATTGGTACCACACTTCGAACAGAAATTAGGTCTTTCCATTCCAGGATA
TCCCTGGGTTGCAGAGTAAGGTGGTGGTTCTGGCATAGCCATAATGATta
tgttttatatattttctcttttttttttgcactgaaagaacaatcaaaat
tagtcTATATTTCAATCATCTATGTAATATGTACTAGAAAACTAAATGTA
GGTAACCTTCCATCAGAAAACTTATGAAAAGTCTAGCAGATGAATAATTA
AATGTTTTTCGAGCATTTTGGGTTTACAAAAACAAGATAAACAATAGTCA
TTC Run BLAST on NCBI transcript from alignment at sc0000164:82637..84674+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013277 ID=TCONS_00013277|Name=TCONS_00013277|organism=Clytia hemisphaerica|type=transcript|length=2038bp|location=Sequence derived from alignment at sc0000164:82637..84674+ (Clytia hemisphaerica)
aacattttaagaacatttttaggcttcaaatccaaaaaaactaagaacat
ccgaaggcttcgaaaatttttgacgttcttataaaaaaaaaacgtgtaga
acgTATTACATAGTAAGTTTAAAAcaacctttttctttttcatcagaAAT
GTAGACGATGCGTTTTTGTTTTTAGTCAACACTGTTTTTACGTTTAAGCA
TTCTAATTAATGGTGTCTttgggccgtccatatagtacgtacgcaaagat
ttttcaaaaatttgataccccctccccccttgtacgcagagaacaataga
aaggaTGTCATTTagacaatagatgtacgctttgctaaacccccctctcc
ccccttcactgcgtacgtactatatggatggccccttaTGGCAAATCAAG
AACGATCAACGCGCGAGAAACAGTATTTTTTGTTCTGAAAAGTTTTTGTA
AGCTCGGTATTTTTTCATATCGGTTTAGACCTCACTTTTTATGCTGTCAA
TCTGGTTTTAATCATTAAAGATTGTAACACTCTTTTTAACTTTGAATTAA
ACTGTCTACATTTTGGttacgttaaatgaacgttatgaacattagataaa
cgttaaaacaactttgtgtgccagctgggtacatCTATTGTATTATACGG
TTTAAAATCATTGCGACGGGCCATTGGACCAAACCAATAAACGTGAATCA
TGCTTAATACACACTGTATTACAGTACACACTCTATTAATACACAATAAG
CATCTCATAATAACTCGTTTCCAAGCTCCTTTTTAAGCAATACGTCCAAT
TCCTGAGGTACATCCATCATCCACCCCGTGGTCCCATGATTCAGAAATGA
GTTTCTCACTAGCCGATTTCGTTAGTGAAATAGCTAAGAAACTCATCTCA
TAATCCCCATTCTTTTTACCAGCAGTGCGATCAGCATAAAATCTTGACCG
GGGTGCATTACTGTGCTGCTTATAGGTCATAAACTTTGCATGCATATCTT
TTGGATTTAAAACCGCATTAACATCACTAAGCCATGCTTTCAAACCAGTG
TACCAATCACCATAGCAACAAGGTAAACAATCCAAAGGATGTGACATTGA
TGTAGGACATAACAAAGCACAAAGAACAGTTTGTGCAATGAACCCAGGGC
AACAAAAGATGGTCAGACATCCAACAACAGAGGGGGCCTTCTTTTGTACT
TTCATCAAATCTATCATCCATTTTTTCCATTGATCTCCATTTATTCCTTT
CGTCGCCAATTGTTGAGGCACTTGGTTGATATTCTCAGGCCGAATACCAA
CCGTTTGCCATGGACAACAAGATACTTTCTCAAAATCAATAATAAGACGG
TTATCTTTAACCACATAATAGATCAAGCCAGAACCAGCTTGAGTATCAAC
ACTGGAAGATGACCCCTCTCCTGTGGCAATGAAGGCAGGGTTCACACCAC
CACCTGTTGGTTGCTTAGTGACTGGCTCTGGTTGTTTGGTATTGACTAGC
TTAGGAGGAGTATGATTTCCTGGTTGAACAACCACATGATGCGGTAAAGG
AGGAGCATTTCCTGGTTGAGGAGTAACATGATAGGATTGTGGAGCAGTNA
TTCCCTGGTTGAACAACCACATGATGCGGTAAAGGAGGAGCATTTCCTGG
TTGAGGAGTAACATAATAGGATTGTGGAGCAGGAATAACATTATTCCCAC
ATGAAGTACAATGGTAAACAGCTGGGTTCATGTCCACATTGGTACCACAC
TTCGAACAGAAATTAGGTCTTTCCATTCCAGGATATCCCTGGGTTGCAGA
GTAAGGTGGTGGTTCTGGCATAGCCATAATGATtatgttttatatatttt
ctcttttttttttgcactgaaagaacaatcaaaattagtcTATATTTCAA
TCATCTATGTAATATGTACTAGAAAACTAAATGTAGGTAACCTTCCATCA
GAAAACTTATGAAAAGTCTAGCAGATGAATAATTAAATGTTTTTCGAGCA
TTTTGGGTTTACAAAAACAAGATAAACAATAGTCATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013277-exon-sc0000164-1491911889:82637..84171 | TCONS_00013277-exon-sc0000164-1491911889:82637..84171 | Clytia hemisphaerica | exon |
| TCONS_00013277-exon-sc0000164-1510915933:82637..84171 | TCONS_00013277-exon-sc0000164-1510915933:82637..84171 | Clytia hemisphaerica | exon |
| TCONS_00013277-exon-sc0000164-1575043694:82637..84171 | TCONS_00013277-exon-sc0000164-1575043694:82637..84171 | Clytia hemisphaerica | exon |
| TCONS_00013277-exon-sc0000164-1491911889:84257..84674 | TCONS_00013277-exon-sc0000164-1491911889:84257..84674 | Clytia hemisphaerica | exon |
| TCONS_00013277-exon-sc0000164-1510915933:84257..84674 | TCONS_00013277-exon-sc0000164-1510915933:84257..84674 | Clytia hemisphaerica | exon |
| TCONS_00013277-exon-sc0000164-1575043694:84257..84674 | TCONS_00013277-exon-sc0000164-1575043694:84257..84674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000164 | supercontig | sc0000164:82637..84674 + |
Blast
The following BLAST results are available for this feature:
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