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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013259 ID=TCONS_00013259|Name=TCONS_00013259|organism=Clytia hemisphaerica|type=transcript|length=2568bpRun BLAST on NCBI protein sequence of TCONS_00013259-protein >TCONS_00013259-protein ID=TCONS_00013259-protein|Name=TCONS_00013259-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MLDLTVQDQTSNLIGNENKSMSDVSNCKVNAVEEKDNADKIIEEKLDESIRun BLAST on NCBI transcript from alignment at sc0000163:476538..494493- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013259 ID=TCONS_00013259|Name=TCONS_00013259|organism=Clytia hemisphaerica|type=transcript|length=17956bp|location=Sequence derived from alignment at sc0000163:476538..494493- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000163:476538..494493- >TCONS_00013259 ID=TCONS_00013259|Name=TCONS_00013259|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000163:476538..494493- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013259 vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 7.167e-54 Identity = 132/382 (34.55%), Postives = 216/382 (56.54%), Query Frame = 3
Query: 1221 ERILLNVSGSRYETYVETLERFPTTLLGDLRKRQKFYS--NGEYYFDRNRVVFDSILFFYQSFGRLTRPSNVPMSIFENECRYFDLPDEAIVSMKTKEGFLLDIGDLKPARTRRQKIWYIIQYPESSKNAMXXXXXXXXXXXXXXXLGFIESIPSVQKSS--------AENQQFL----------FIVDFLVTLWFVIEITVSILAAPISRT--IRRPMTYIDFIGSYPYLFFLMSTGVND---------FPVIKFCRICRLFKLMRLFRIFTSSKRTETLTRXXXXXXXXXXXXXXXXXXXXXXGASLIYMIESRVPGSQFTSVPACSWWALQTVVVLGYGDLVPETPEGKLLASVFMICGVTTISLPVLSVASKFLKIYE 2273
ER+++N+SG R+ET ++TL +FP TLLG+ +KR +++ EY+FDRNR FD+IL++YQS GRL RP NVP+ +F E ++++L +EA+ + EGF+ + P + ++++W + +YPESS A V +IVS+++ IS+ + +E++P ++ +N + FIV+ L +WF E+ V A P S+T + M +ID + PY F + T + + + R+ RL ++ R+F++ SK + L + L +S+ EL LL L I V L +S +Y E+ S F+S+P WWA+ ++ +GYGD+ P T GK++ S+ I GV TI+LPV + S F Y
Sbjct: 37 ERVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACP-SKTDFFKNIMNFIDIVAIIPY-FITLGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 416 The following BLAST results are available for this feature:
BLAST of TCONS_00013259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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