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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013203 ID=TCONS_00013203|Name=TCONS_00013203|organism=Clytia hemisphaerica|type=transcript|length=5748bpRun BLAST on NCBI protein sequence of TCONS_00013203-protein >TCONS_00013203-protein ID=TCONS_00013203-protein|Name=TCONS_00013203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1074bp MTIRVSPSSVDEMSLNGGEQTHMVSVAAKSPLTEMRRKQQNDVIQNGRPGRun BLAST on NCBI transcript from alignment at sc0000163:284676..306772+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013203 ID=TCONS_00013203|Name=TCONS_00013203|organism=Clytia hemisphaerica|type=transcript|length=22097bp|location=Sequence derived from alignment at sc0000163:284676..306772+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000163:284676..306772+ >TCONS_00013203 ID=TCONS_00013203|Name=TCONS_00013203|organism=Clytia hemisphaerica|type=CDS|length=80625bp|location=Sequence derived from alignment at sc0000163:284676..306772+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013203 vs. Swiss-Prot (Human)
Match: ADCY3 (Adenylate cyclase type 3 OS=Homo sapiens GN=ADCY3 PE=1 SV=3) HSP 1 Score: 595.504 bits (1534), Expect = 0.000e+0 Identity = 359/927 (38.73%), Postives = 525/927 (56.63%), Query Frame = 1
Query: 682 NITKQIISNVLLFLAVNVIGVMNYLVTDVNQRRSFLDTREAIQVKMSFEKEEKNQRRLLQSILPATVANKIIEDMRTDGTILNESEGFKKIYIKSYDKCSILFADIVGFTNYSSKVTAEKLIYMLNELFANFDKLAKRNLCQRIKILGDCYYCISGFDEGTNGDSNVDKLTHAENSVEMGLAMVKHIKKVREDINVSIDMRVGIHSGHVLAGILGQKKWQFDVWSNDVTLANQMESGGIPGRVHITEATYQLIKDSYEVEDGKGGERNQYLKENKVQTYLITEAKSNFKEKRNTGTXXXXXXXXXXXXXXETDQENCGGGTLARISSAFAKASEKRKSEVHHHIDSNEMSDPDVTAVVADELTTNTAAYNFK-QNAHQNTDDINSEENRINAMLAEELAHRNS-ELTDAAN--FITLRFKKNDIEVEYYREKKMFCLISLAGPLAITLFSFLVELTVYDRRTVNYVTFASSMFILLTFWLITWIGRYSNVIPPTLTKLSNLFHYFAPVRNIIAFVSVLVVIFAEVIDIIF--------SNSSAQSDVAFST-----YYSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFLVINENLDLLD-------DLTFGA---AGGYKPXXXXXXXXXXXXIFYSIVIL---------FHSRQSEANARVLMLWKKQALDNKQNVESLRHRNEALMQNILPIHVIEHFLQVDNKDETELYSKSYNSVGVIFASIPNFSQFYTEESYNNGGIECMRVLNEIISDFDEVLRDKKFSLIEKIKTVNSCYMAASGLV-------HHESNSPDIIRGDPWQHLVDLTDFALALRQKLDAMNAESFNNFELRVGIANGPVVAGVIGAKKPHYDIWGNTVNIASRMESTGKSGTIQVLGDTYEVLKDRGFEFEQRGYVPVKGKGNLLTYILISR 3333
+ ++I++NV L+L +G+M+Y + D R++FL+ R++++VKM+ E++ + Q L+ SILP VA+++++DM+ D + ++ + F +Y+ ++ SILFADIVGFT SS +A++L+ +LNELFA FDKLA + RIKILGDCYYCI G D D HA S+ MGLAMV+ I VRE +DMRVG+H+G VL G+LGQK+WQ+DVWS DVT+AN+ME+GGIPGRVHI+++T +K ++VE G GG R YL+E ++TYLI +K E + T T + + G A S+ E ++ H + P+ AD + + Q+ D + +E+ +N +L E L R S ++ N +++RF ++E Y EK+ + + + L + LVE+ + NYVTF +LL + + + P L S RN A +++ +++ A V+D++ SN++A + S YY+++ +L L+ L+Q+S ++++ L +L ++ D D DL A G+ P L+ L L YS+ ++ + SR E AR L LWK + D K+ V +R NEAL+ N+LP HV HFL +DE ELYS++Y+ +GV+FAS+PNF+ FYTEES NNGGIEC+R LNEIISDFD +L + KF +I KIKT+ S YMAASG+ SN D + WQHL DL DFALA++ L +N +SFNNF LR+G+ G V+AGVIGA+KPHYDIWGNTVN+ASRMESTG G IQV+ +T +L++ GF F +RG + VKGKG LLT+ L R
Sbjct: 221 QLLREILANVFLYLCAIAVGIMSYYMADRKHRKAFLEARQSLEVKMNLEEQSQQQENLMLSILPKHVADEMLKDMKKDESQKDQQQ-FNTMYMYRHENVSILFADIVGFTQLSSACSAQELVKLLNELFARFDKLAAKYHQLRIKILGDCYYCICGLP-----DYRED---HAVCSILMGLAMVEAISYVREKTKTGVDMRVGVHTGTVLGGVLGQKRWQYDVWSTDVTVANKMEAGGIPGRVHISQSTMDCLKGEFDVEPGDGGSRCDYLEEKGIETYLIIASKP---EVKKTATQNGL------------NGSALPNGAPASSKSSSPALIETKEPNGSAHSSGSTSEKPEEQDAQADNPSFPNPRRRLRLQDLADRVVDASEDEHELNQLLNEALLERESAQVVKKRNTFLLSMRFMDPEMETRYSVEKEKQSGAAFSCSCVVLLCTALVEILIDPWLMTNYVTFMVGEILLLILTICSLAAIFPRAFPKKLVAFSTWIDRTRWARNTWAMLAIFILVMANVVDMLSCLQYYTGPSNATAGMETEGSCLENPKYYNYVAVLSLIATIMLVQVSHMVKLTLMLLVAGAVATINLYAWRPVFDEYDHKRFREHDLPMVALEQMQGFNPGLNGTDRLPLVPSKYSMTVMVFLMMLSFYYFSRHVEKLARTLFLWKIEVHDQKERVYEMRRWNEALVTNMLPEHVARHFLGSKKRDE-ELYSQTYDEIGVMFASLPNFADFYTEESINNGGIECLRFLNEIISDFDSLLDNPKFRVITKIKTIGSTYMAASGVTPDVNTNGFASSNKEDKSERERWQHLADLADFALAMKDTLTNINNQSFNNFMLRIGMNKGGVLAGVIGARKPHYDIWGNTVNVASRMESTGVMGNIQVVEETQVILREYGFRFVRRGPIFVKGKGELLTFFLKGR 1122 The following BLAST results are available for this feature:
BLAST of TCONS_00013203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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