TCONS_00013194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013194
Unique NameTCONS_00013194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013194 ID=TCONS_00013194|Name=TCONS_00013194|organism=Clytia hemisphaerica|type=transcript|length=558bp
CTCCATTTTCGTTATATCGTCAGTGATGCTCAATTTTACGTATTTCTCGT
GCTGTCTTAGTTCAGTCAACTTCTTCATGAAGCGGTATTTTATATGGCTG
TCTTTGAATGCGACTTTGATTGGGCGCACACCATTTTATTGTTTTCCAAC
TCGAAAGACAAAGGTTGGTTGAGTTTTTACGTTGACGTCATTCAAAAGTT
TGTTCACGAAATTGATATCTTCTTTATATTCTTTTTCACACACCCGTGGA
TGATGATGTTTGCGTGGATGATGGTTTGCATCTATTGATTGCTTTCTCTG
GTCTTCGCTTTGTTCTTTGACTTTCTCCCTTCTAAGTAACTGCCTTACTT
TCGAGCGTCGGCaaaactttttggttcttttgccacttgaacttttgaaa
tcttAGCATTCACTTTCTCTTCAATTTTGGTGGATAGCTTCTTTTCCAGG
ACGGAAAATTGGCTCTGGATTAGATCATCTTGCCTGTAAGTCCTTGACCA
TGGTGTTAAGTGTAGCATTCTTTGACATTTATGACttgaatcttcatttt
ttcattat
Run BLAST on NCBI

transcript from alignment at sc0000162:422259..422816

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013194 ID=TCONS_00013194|Name=TCONS_00013194|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0000162:422259..422816 (Clytia hemisphaerica)
ataatgaaaaaatgaagattcaaGTCATAAATGTCAAAGAATGCTACACT
TAACACCATGGTCAAGGACTTACAGGCAAGATGATCTAATCCAGAGCCAA
TTTTCCGTCCTGGAAAAGAAGCTATCCACCAAAATTGAAGAGAAAGTGAA
TGCTaagatttcaaaagttcaagtggcaaaagaaccaaaaagttttGCCG
ACGCTCGAAAGTAAGGCAGTTACTTAGAAGGGAGAAAGTCAAAGAACAAA
GCGAAGACCAGAGAAAGCAATCAATAGATGCAAACCATCATCCACGCAAA
CATCATCATCCACGGGTGTGTGAAAAAGAATATAAAGAAGATATCAATTT
CGTGAACAAACTTTTGAATGACGTCAACGTAAAAACTCAACCAACCTTTG
TCTTTCGAGTTGGAAAACAATAAAATGGTGTGCGCCCAATCAAAGTCGCA
TTCAAAGACAGCCATATAAAATACCGCTTCATGAAGAAGTTGACTGAACT
AAGACAGCACGAGAAATACGTAAAATTGAGCATCACTGACGATATAACGA
AAATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007375XLOC_007375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013194-exon-sc0000162-1491911889:422259..422816TCONS_00013194-exon-sc0000162-1491911889:422259..422816Clytia hemisphaericaexon
TCONS_00013194-exon-sc0000162-1510915933:422259..422816TCONS_00013194-exon-sc0000162-1510915933:422259..422816Clytia hemisphaericaexon
TCONS_00013194-exon-sc0000162-1575043694:422259..422816TCONS_00013194-exon-sc0000162-1575043694:422259..422816Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:422259..422816 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04063	0.329762	0.484882	0.337821	0.411264	0.974959	0	0.611771	0.0856631	0.106108	0.532556	0.270808	0.202823	0	0.230893	0.138662	0.152625	0.161537	0	0	0	0.143822	0	0	0.218286	0.487037	0.27878	0	0	0.237688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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