TCONS_00013179 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013179
Unique NameTCONS_00013179
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013179 ID=TCONS_00013179|Name=TCONS_00013179|organism=Clytia hemisphaerica|type=transcript|length=815bp
AAATTCTATTCAACCTATATACCGTCGAGCTACAAGATAACGTCGAGGGT
GGGAGTACAAACCAATATGCAGACGGCACTACTATCTATGAACACTGTAA
GACAGTAAACCTCCCAGCTTCAATCGTCAACTTAACACATCGTTTAAACC
AACTTAGAGAATGGTCAACCACTAATAATCTGGcgtttaacaaaaaaaaa
aaaatcatgctACTGTCAACACTGAGAATGTCAAACCTTCACGATTTCAT
GAACCCCGTTCACGCAACCTTTCATATCTATCACACAGACCAACTGATAG
AACGAGTTACCGTGTATAAACTTCTTGGCATCCAATTCGATCCAAATCTA
AACTGGGAAACTCATATCGATAAACTGTGTCAATCAGTTTACGCAAAATT
ATACGTGGTACGCTATCTTCGTCGTACAGCAACTTTTCGTCTGCGGAAGA
AGCTGGCAGAAGCCcttcttttatcaaaattacaCTACTGCTGTTCTGGA
ACCTGCCACAAATCCAGTTGAAAAAAACTTGATAAACTACTATGCAGAAT
TGCAGCTTTCGCGACGCTGAGATATTCTACAATCGAGGATGTAGTACAGC
TTGGTTGGTTACCGATCCAGCAGCAAAttcattttgaacttttgaaactC
GCACACAAATCGATACATCAGGATGAGTTTCCATCGTACTTAAAAGGTTT
TAAATTAAGAGTCGCTGGACGTAATATTCGTAATGTTGAGGAAGTTGAAT
CTAAATACGAGACTAATATAtcagaaaaattatttgttgGTAAGGCAAGT
CGCATTTTGAAtgat
Run BLAST on NCBI

protein sequence of TCONS_00013179-protein

>TCONS_00013179-protein ID=TCONS_00013179-protein|Name=TCONS_00013179-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
ILFNLYTVELQDNVEGGSTNQYADGTTIYEHCKTVNLPASIVNLTHRLNQ
LREWSTTNNLAFNKKKKIMLLSTLRMSNLHDFMNPVHATFHIYHTDQLIE
RVTVYKLLGIQFDPNLNWETHIDKLCQSVYAKLYVVRYLRRTATFRLRKK
LAEALLLSKLHYCCSGTCHKSS
Run BLAST on NCBI

transcript from alignment at sc0000162:166585..167399

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013179 ID=TCONS_00013179|Name=TCONS_00013179|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at sc0000162:166585..167399 (Clytia hemisphaerica)
atcaTTCAAAATGCGACTTGCCTTACcaacaaataatttttctgaTATAT
TAGTCTCGTATTTAGATTCAACTTCCTCAACATTACGAATATTACGTCCA
GCGACTCTTAATTTAAAACCTTTTAAGTACGATGGAAACTCATCCTGATG
TATCGATTTGTGTGCGagtttcaaaagttcaaaatgaaTTTGCTGCTGGA
TCGGTAACCAACCAAGCTGTACTACATCCTCGATTGTAGAATATCTCAGC
GTCGCGAAAGCTGCAATTCTGCATAGTAGTTTATCAAGTTTTTTTCAACT
GGATTTGTGGCAGGTTCCAGAACAGCAGTAGtgtaattttgataaaagaa
gGGCTTCTGCCAGCTTCTTCCGCAGACGAAAAGTTGCTGTACGACGAAGA
TAGCGTACCACGTATAATTTTGCGTAAACTGATTGACACAGTTTATCGAT
ATGAGTTTCCCAGTTTAGATTTGGATCGAATTGGATGCCAAGAAGTTTAT
ACACGGTAACTCGTTCTATCAGTTGGTCTGTGTGATAGATATGAAAGGTT
GCGTGAACGGGGTTCATGAAATCGTGAAGGTTTGACATTCTCAGTGTTGA
CAGTagcatgatttttttttttttgttaaacgCCAGATTATTAGTGGTTG
ACCATTCTCTAAGTTGGTTTAAACGATGTGTTAAGTTGACGATTGAAGCT
GGGAGGTTTACTGTCTTACAGTGTTCATAGATAGTAGTGCCGTCTGCATA
TTGGTTTGTACTCCCACCCTCGACGTTATCTTGTAGCTCGACGGTATATA
GGTTGAATAGAATTT

Coding sequence (CDS) from alignment at sc0000162:166585..167399

>TCONS_00013179 ID=TCONS_00013179|Name=TCONS_00013179|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0000162:166585..167399 (Clytia hemisphaerica)
TCAACTGGATTTGTGGCAGGTTCCAGAACAGCAGTAGtgtaattttgata
aaagaagGGCTTCTGCCAGCTTCTTCCGCAGACGAAAAGTTGCTGTACGA
CGAAGATAGCGTACCACGTATAATTTTGCGTAAACTGATTGACACAGTTT
ATCGATATGAGTTTCCCAGTTTAGATTTGGATCGAATTGGATGCCAAGAA
GTTTATACACGGTAACTCGTTCTATCAGTTGGTCTGTGTGATAGATATGA
AAGGTTGCGTGAACGGGGTTCATGAAATCGTGAAGGTTTGACATTCTCAG
TGTTGACAGTagcatgatttttttttttttgttaaacgCCAGATTATTAG
TGGTTGACCATTCTCTAAGTTGGTTTAAACGATGTGTTAAGTTGACGATT
GAAGCTGGGAGGTTTACTGTCTTACAGTGTTCATAGATAGTAGTGCCGTC
TGCATATTGGTTTGTACTCCCACCCTCGACGTTATCTTGTAGCTCGACGG
TATATAGGTTGAATAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007360XLOC_007360Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013179-proteinTCONS_00013179-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013179-exon-sc0000162-1491911889:166585..167399TCONS_00013179-exon-sc0000162-1491911889:166585..167399Clytia hemisphaericaexon
TCONS_00013179-exon-sc0000162-1510915933:166585..167399TCONS_00013179-exon-sc0000162-1510915933:166585..167399Clytia hemisphaericaexon
TCONS_00013179-exon-sc0000162-1575043694:166585..167399TCONS_00013179-exon-sc0000162-1575043694:166585..167399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:166585..167399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.672462	0.189549	0.423852	0.370936	1.00079	0.700557	0.153963	0.444689	0.163262	0.450136	0.904791	0.25774	0.329459	0.298689	0.25322	0.38622	0.278064	0.141164	0.279	0.33426	0.409363	0.521086	0.0698598	0.0628216	0.848813	0.213792	0.521519	0.383412	0.342645	0.143666
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013179 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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