TCONS_00013147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013147
Unique NameTCONS_00013147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013147 ID=TCONS_00013147|Name=TCONS_00013147|organism=Clytia hemisphaerica|type=transcript|length=1395bp
ACTCTAATAATGACATACAGACACCTTTGACTGTTAAAGTTTATAAAAAA
CGATGGCTCATATTGTTCATATTCTCTATAAATTCGATGGCCAACGCAAT
TTTGTTCACATGTATTACTGCTATTAACAAAATTGTTTGCAAGTATTACC
ATATCTCACCTGAGTTGACTGACTGGGCCGGAAATATTTTTGACTTAGTT
TACATCCTGATTGCCCTCCCATCAGCTTACTGTATGGACAACTTTGGAAT
CAAAACACTTTTGATAATTGGATCCAGTTTAAATGGAGTTTGTGTGTGTC
TTCATCTAGCTGGTACAACACAGCAAGggatttggtttgttttggtgggT
CAACTTACCGCTGGCTTTTCAGTAGCAGCAGCTCTTCAAATTCCAACACA
ATTATCAATGGTGTGGTTTCCAGAACATGAGTATGCAAAAGCTACAAGTG
TATCATTGGGATTTAATGTTTTGGGATTGGCAATTGGTTTTTTGCAGCCT
TCCATTATGGTTCCGGATAGTGAAAATATGAATGAAATTTATGATGGATT
ATTGAAAGTGAATATCTCACATGTTGCTCTCTTAGCAGTGTGTTTGATAT
ctgcttatttattttttgatgaaaaacctCCATTACCACCCTCGTATGCC
AAAGCTGTTCTCGATAGTTCAAGCGTAGATGAACATGTTGATACACCTGG
CTTTAAACTTTCCTTAAAAATGCTTTTCACTGACaaagattttatgattt
tggcGTTTGTTTACGGTATACAGTTTGGATTATATAATATGTTTGTGACT
TGCCTCAATGAAATGTCCAGCAATATCACAAGCTCAGCAAACATTGGTTG
GCTTGGATTCATCAGTAATGTCATCAGTATTGTGGGAATCTTATCATTTG
CTGCTCTGGCCGATAAATACAGATTTTATAAAAAGATAACTCATTTTCTG
TTCTTTGTACAAATTCTTTGTTGGGTAGGATTCAGTGCTGCTACTCTATA
TTGGAAAACGACAGCCACACTTTTTATCACCTACTGTTTAGTGTCATTCT
TCAACGTACCTTTCATAGCTGTTGGTTTGTCATATGCTACAGAGCTTACG
TATCCTGTGACTGAAGGGATGTCCAGTGCCATTGTACTAATAATTGGAAA
TTTGATTGGATCTTCAAGTGTTTTTGCGTTTGGGAAATTGATTGATAATG
GATATATGTTTTTGATGTGTAGCATTGTCACTGGAATGTATGTGGTCGCC
TTTATCTTGACTTTCTTCGTCAAGGAGAATTTAAAGAGATCTGACCAAGA
ATCGCAACACAACAGTGATTCACATTATCCAATTTCTAAAGATACTTGAT
CGTGTCGATTTATTATCTTGTTTTAGTGATTCTTTAGCATGACAC
Run BLAST on NCBI

transcript from alignment at sc0000162:206922..210497-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013147 ID=TCONS_00013147|Name=TCONS_00013147|organism=Clytia hemisphaerica|type=transcript|length=3576bp|location=Sequence derived from alignment at sc0000162:206922..210497- (Clytia hemisphaerica)
ACTCTAATAATGACATACAGACACCTTTGACTGTTAAAGTTTATAAAAAA
CGATGGCTCATATTGTTCATATTCTCTATAAATTCGATGGCCAACGCAAT
TTTGTTCACATGTATTACTGCTATTAACAAAATTGTTTGCAAGTATTACC
ATATCTCACCTGAGTTGACTGACTGGGCCGGAAATATTTTTGACTTAGTT
TACATCCTGATTGCCCTCCCATCAGCTTACTGTATGGACAACTTTGGAAT
CAAAACACTTTTGATAATTGGATCCAGTTTAAATGGAGTTTGTGTGTGTC
TTCATCTAGCTGGTACAACACAGCAAGGGATTTGGTTTGTTTTGGTGGGT
CAACTTACCGCTGGCTTTTCAGTAGCAGCAGCTCTTCAAATTCCAACACA
ATTATCAATGGTGTGGTTTCCAGAACATGAGTATGCAAAAGCTACAAGTG
TATCATTGGGATTTAATGTTTTGGGATTGGCAATTGGTTTTTTGCAGCCT
TCCATTATGGTTCCGGATAGTGAAAATATGAATGAAATTTATGATGGATT
ATTGAAAGTGAATATCTCACANTAGTGAAAATATGAATGAAATTTATGAT
GGATTATTGAAAATGAATATCTCACATGTTGCTCTCTAAGCAGTTTGTTT
GATTTCAGCTTATTTATTTTTCGATGAAAAACCTCCATTGCCACCCTCGT
ATGCCAAAGCTGTTCGTGATAGTTCAAGCATTAATGGAGACGCTGGTTCG
CCTGGCTTCAAAGAATCCTTGAAAATGCTTTTCACAAACAAAAATTTCAT
GTTACTTTGTTGTGCTTATGGCGTACAATTTGGTATATATAATCTCTTTC
TCACGTGCCTTGATGAAATGACAAATCACTTAACAAGTTCTAAAAATATT
GGCTGGTTAGGCTTCTCAGGCAACATTGCAAGTATAATTGGAATTCTTGG
CTTTGCTTCTATTGTTGACAAATACAAATGTTACAAGAAAATGATGTTTT
TCCTCTTTTTTATGCAGATTCTTTGCTGGATAGCATTTAGTTCTGTGATA
TTGTATTGGAAAACAACATTAGTATTGTTTGTGTCTTACATCGTGCTGTG
TCTTTTCGGTGTCCCCTTCTTGTCAATTGGCTTATCTTATTCCGCTGAAC
TAACTTACCCAATATCAGAAGGACTTTCAAGTGCTATTTGTTTGGTGTTT
GGAAATACCTTTGGTTTTATTATGATAATTACACTGGGCAAGTTGATCGA
TAATAATCATGCATTTTTGATGTGTGCAATTGTTGCTGGATTTTATGTTA
TTGGATTTCTCTTATGTTTTTTCATCAAAGAAGATTTGAAAAAAATGAAT
ATCGAATCAGAACAACCTGATCCTGTTACCATTGGGGCTGAAAATACTTA
AATTGATTCTGTTTATAATTCTGTTCAATCAAACTCAAAGAGAGTCTTTT
TTGTTGTAGCAATGCCAGTTTAAAATGGATGCCTAAGCATGTGTTGTTTA
TTAGAAAGTTTAAACCTTTGTACGGGGTCCGATCGTAGTTATAAAGTCAA
TCCATCTGAAGTTTCACCTAACAAATAATGTATGTCCATTCACACATTCG
TATTTTTAGCAATATTCGACACAATATCGTTCAATTTATTTTATAACGCA
TTTTATAACATTTTATTAAATTATATTTTGTAATTATTTCTTGGATTCTT
TACTTTTATTAAAATTTTTGTATTGTATTTTTTCAAATTGAATTCTCAAT
ATATATTAAATTGTCTCTACTAATCTTTTTCCTTTGTTCCTTTTTTACGA
GTTTGGATTTAAATTGATCATCTTAATATTCGAGCACGGTGGTAATTTTA
AATCAGTAGCTACAAATTTCTTTCCAATATTTCTGAAAGTTTTTCCCTAA
GTAAGTGCAATAAAGATTAAATTCTTCAAAGAACAAGTAAATTCAAACAT
ATTAATAACATATGTGTCTTCAAATCTTAAGGAAGATCAATGAATTAATC
CCTCTTTTGCTTGGGTTCTGTCATTCAACGCTGAGGGTTTTTTTTTTTTT
ATGTTTGACTAATTCCAATCATTCTTGAATACAAAAAATTCCCATACCCT
TTAAAAATACACATTCCAAGCTTAATTTGATTATTCCCACTTTTGTTTAG
ATAATGGAAGAAAACAAAAGAATCACATCTTCTGGTGAAAATATTCAGAA
ACCTTTAAAAGTGAAAGTTTACAAGAAACGATGGATCATACTGTTCATAT
TTGCAATAAATTCTTTGGCAAATGCTCTATTATTTGTGTCAACCACATCC
ATCAATAGTATTATCTGCAGATATTACAATATTTCACCATCGCTGACAGA
TTGGTCTGGGAATAGCTTTGCTGTTGTGTTTGTGTTGATTGCATTACCTT
CTGCTTACTGTATGGATTCATTTGGTGTAAGGACTTTGGTACTGATAGGC
TCAAGCTTAAATGCCATCTGTGTTTGTTTACATGTAGCAGGTACAGCTAG
AGAAAATGGCATATGGTATGTGTTGACTGGTCAATTCATTGCTGGCTTTT
CAGTTGGTGCAATCCTCCAGGTACCCCCACGTCTTGCTTCAGTATGGTTC
CCAGAACACGAACAAGCTAGAGCTGTAAGCATGGCTACTGGATTCAATGT
GTTGGGATTGGCAATTGGTTTTTTACAGTCATCTTACATGGTTCCAGATA
GTGAAAATATGGATGAAATTTATGATGGATTATTGAAGATGAATATTTCA
CATGTTGCTCTCTTAGCAGTGTGTTTGATATCTGCTTATTTATTTTTTGA
TGAAAAACCTCCATTACCACCCTCGTATGCCAAAGCTGTTCTCGATAGTT
CAAGCGTAGATGAACATGTTGATACACCTGGCTTTAAACTTTCCTTAAAA
ATGCTTTTCACTGACAAAGATTTTATGATTTTGGCGTTTGTTTACGGTAT
ACAGTTTGGATTATATAATATGTTTGTGACTTGCCTCAATGAAATGTCCA
GCAATATCACAAGCTCAGCAAACATTGGTTGGCTTGGATTCATCAGTAAT
GTCATCAGTATTGTGGGAATCTTATCATTTGCTGCTCTGGCCGATAAATA
CAGATTTTATAAAAAGATAACTCATTTTCTGTTCTTTGTACAAATTCTTT
GTTGGGTAGGATTCAGTGCTGCTACTCTATATTGGAAAACGACAGCCACA
CTTTTTATCACCTACTGTTTAGTGTCATTCTTCAACGTACCTTTCATAGC
TGTTGGTTTGTCATATGCTACAGAGCTTACGTATCCTGTGACTGAAGGGA
TGTCCAGTGCCATTGTACTAATAATTGGAAATTTGATTGGATCTTCAAGT
GTTTTTGCGTTTGGGAAATTGATTGATAATGGATATATGTTTTTGATGTG
TAGCATTGTCACTGGAATGTATGTGGTCGCCTTTATCTTGACTTTCTTCG
TCAAGGAGAATTTAAAGAGATCTGACCAAGAATCGCAACACAACAGTGAT
TCACATTATCCAATTTCTAAAGATACTTGATCGTGTCGATTTATTATCTT
GTTTTAGTGATTCTTTAGCATGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007344XLOC_007344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013147-exon-sc0000162-1575043694:209928..210497TCONS_00013147-exon-sc0000162-1575043694:209928..210497Clytia hemisphaericaexon
TCONS_00013147-exon-sc0000162-1575043694:206922..207746TCONS_00013147-exon-sc0000162-1575043694:206922..207746Clytia hemisphaericaexon
TCONS_00013147-exon-sc0000162-1510915933:209928..210497TCONS_00013147-exon-sc0000162-1510915933:209928..210497Clytia hemisphaericaexon
TCONS_00013147-exon-sc0000162-1510915933:206922..207746TCONS_00013147-exon-sc0000162-1510915933:206922..207746Clytia hemisphaericaexon
TCONS_00013147-exon-sc0000162-1491911889:209928..210497TCONS_00013147-exon-sc0000162-1491911889:209928..210497Clytia hemisphaericaexon
TCONS_00013147-exon-sc0000162-1491911889:206922..207746TCONS_00013147-exon-sc0000162-1491911889:206922..207746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:206922..210497 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275002	0	0	0.230638	0.330276	1.08065	0.708165	1.10931	0.19901	1.03238	0.652546	0.390107	0.383587	0	0.663545	0.568813	0	0.0902589	0.927054	0.710421	0.561382	0	0	0.504079	1.44401	0.0479708	0.547767	0	8.23941e-05	0.398798
Blast
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BLAST of TCONS_00013147 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.258e-47
Identity = 129/441 (29.25%), Postives = 227/441 (51.47%), Query Frame = 3 
Query:   33 VKVYKKRWLILFIFSINSMANAILFTCITAINKIVCKYYHISPELTDWAGNIFDLVYILIALPSAYCMDNFGIKTLLIIGSSLNGVCVCLHLAGTTQQGIWFVLVGQLTAGFSVAAALQIPTQLSMVWFPEHEYAKATSVSLGFNVLGLAIGFLQPSIMVPDSENMNEI--YDGLLKVNISHVALLAVCLISAYLFFDEKPPLPPSYAKAVLDSSSVDEHVDTP--GFKLSLKMLFTDKDFMILAFVYGIQFGLYNMFVTCLNEMS--SNITSSANIGWLGFISNVISIVGILSFAALADKYRFYKKITHFLFFVQILCWVGFSAATLYWKTTATLFITYCLVSFFNVPFIAVGLSYATELTYPVTEGMSSAIVLIIGNLIGSSSVFAFGKLIDN-----GYMFLMCSIVTGMYVVAFILTFFVKENLKR--SDQESQHNS 1316
            +KV ++RW ++ +FS  SM N+  +    +IN I   +Y +S    DW    + L YI + LP A+ ++ FG++T+ + GS+LN +   + L           +VGQL    +    L +P++++ VWF  +E + A SV++  N LG+AIGFL P ++VP+ E+ +E+  +  ++   I  VA L + L+   + F EKP  PPS A+      S+   + +P   +  S+  LF + +F++L   YG+  G +    T LN M          N G +G    +  ++G +      D+ + YK+ T  ++ + ++  V ++  TL       +FIT   + FF   ++ +G  +A ELTYP +EG+SS ++ I   + G     + G++IDN     G +FL C  +T    +   LT F+K +L+R  +++E+  N 
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATLLLILV--IIVFKEKPKYPPSRAQ------SLSYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYT-FTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFL-CVFLT----LGAALTAFIKADLRRQKANKETLENK 504
The following BLAST results are available for this feature:
BLAST of TCONS_00013147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC21.258e-4729.25Feline leukemia virus subgroup C receptor-related ... [more]
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