TCONS_00013142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013142
Unique NameTCONS_00013142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013142 ID=TCONS_00013142|Name=TCONS_00013142|organism=Clytia hemisphaerica|type=transcript|length=2139bp
aAATGGTAATGTTTGCAACAATgcccttggaaaaattattttcatacatT
AAAgtgagaaatgaaatgaaaatgttcGCCCACCCCCTGTATTGATATCA
AATGGAATGGCTCAATCTAAGACGCTGTAGAAATCTGTACATTAAAATTC
TTACTTTTGATTGTTATATATttaaaagaaagataattttgatgattttt
gtatgttttgatttcaatattatttcttaaaatttaacGACTGTTTTTTA
ATTGCATTAGAATATTGTTTATTgatcattgtatttttataaaaaaatta
tattttttgaaattatctttATTCCTTAACATTTAAGATGTGAATTATTG
ATAAGTTATTGACTTTATACTTTGGAAGATAATCTTCAAATGCTTTTAAG
TATCTTTACTCTGTTCGGTACCGTATATTTCAATGGATGTGAATTTTCga
gacttttctttttctttccagaaacaaagaaaatgaaaagctACGAAAAG
ATACCAACAACGGAAGATGATCAGAAACCTTTAAAAGTGAAAGTTTACAA
GAAAAGATGGCTCATACTGTTGATATTCGCAATAAATTCTTTGGCAAACG
CTGTTTTGTTTGTATCAATCACATCCATTAATAATATTGCTTGCAGATAC
TACAATATTTCACCAGCGCTGACAGATTGGGCAGGGAATGGTTTCAACAT
TGTTTATGTCTTCATAGCACTGCCATCCGCTTATTTCATGGATTCCTTTG
GTGTGCGAACCTTGGTTATATTGGGTTCAAGCTTGAATGCCATTGGTGTT
TGTTTACATCTGGCTGGTACACCAAGAGAGCATGGTATAGTGTATGTATT
GAGTGGTCAACTTATGGCCGGTCTTTCAATGGGAGCCATTCTTCAGGTTC
CAGCTCGACTTGCTACAGTTTGGTTCCCAGAGCACGAACAAGCAAAAGCA
CTGAGTTTAGCCTTTGTATTCAATGTGTCTGGATTGGCTATTGGTTTTTT
GCAGCCCTCTTACATGGTTCCAGATAGTGACAATATGGATGAAATTTACG
ATGGATTATTGAAGATGAATATTTCACATGTTGCTCTCTTAGCAGTGTGT
TTGATAtttgcttatttatttttcgatgaaaaACCTCCATTGCCACCCTC
GTATGCAAAAGCTGTTGTCGATAGTTCAACCGTTGATGAACATGGTGAGA
CACCTGGCTTCAAACTATCCTTGAAATTGCTTTTTACTGACAGAAACTTC
ATGCTTCTAGCCTTGGTATATGGTTTACAATCTGGTCTGTATAGTATGTT
TGTTACCTGTCTCAATGAGATGGCCAACACCATCGTAAGCTCTTCGCAAA
TCGGTTGGATAGGTTTCTTGGGCAACCTTGTCAGCATCGTTGGCTTAATG
TTATTGGCTTCCATAGCTGATAAATACAAATGTTACAAGAAGATCACCAC
TCGCTTGTTCTTTGTACAAATTCTTTGCTGGATAGCATTTAGTTCTACTA
TACTGTATTGGAAAACAGCCACGTCACTATTTGTGACGTATTCTTTCTTG
TGTTTCTTCAATACCTCTTTTAACGCTGTTGGATTATCTTTTGCTACTGA
GGTTTCTTACCCAGTGACGGAAGGGATGTCGACCGCTATTGTGCTTATGA
TTACCAACACTCTCGGTTTCAtcaatattcttatttttggaAGGCTTGTC
GATGATGGATATGTGTTTTTGATGTGTAGCATTGTTACTGGAATGTATGT
GGTGGCTTTCATTTTGACCTTCTTCGTCAACGAGGATTTGAAGAGATCCA
AACTTGAAGGTCAACACAATGTCAAACCCCTTCCTCAAGTTTCAAAAGAA
GCTTAGTTTAGTTTGAAAGTATAATTTGGACTATGGACTATTGGGAATAT
GATTGTCCTTTAGTATAAATCTTTTTCAGgatatttttgtttaaatttta
tataattattattttgatgctAAGCATTTTTAGTCGAGTAAATTTCTTGa
tacatttgaaatatttttaatgactttATATTTTGTATGTATAATTTATC
AAATTGTATTGGATTTTGTAACTTCAAATTTTTACCTTTTATAAAGGCTA
GTCTTCTTGGGAAATTCTGTcagaatctttttttaaatg
Run BLAST on NCBI

protein sequence of TCONS_00013142-protein

>TCONS_00013142-protein ID=TCONS_00013142-protein|Name=TCONS_00013142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MLLSIFTLFGTVYFNGCEFSRLFFFFPETKKMKSYEKIPTTEDDQKPLKV
KVYKKRWLILLIFAINSLANAVLFVSITSINNIACRYYNISPALTDWAGN
GFNIVYVFIALPSAYFMDSFGVRTLVILGSSLNAIGVCLHLAGTPREHGI
VYVLSGQLMAGLSMGAILQVPARLATVWFPEHEQAKALSLAFVFNVSGLA
IGFLQPSYMVPDSDNMDEIYDGLLKMNISHVALLAVCLIFAYLFFDEKPP
LPPSYAKAVVDSSTVDEHGETPGFKLSLKLLFTDRNFMLLALVYGLQSGL
YSMFVTCLNEMANTIVSSSQIGWIGFLGNLVSIVGLMLLASIADKYKCYK
KITTRLFFVQILCWIAFSSTILYWKTATSLFVTYSFLCFFNTSFNAVGLS
FATEVSYPVTEGMSTAIVLMITNTLGFINILIFGRLVDDGYVFLMCSIVT
GMYVVAFILTFFVNEDLKRSKLEGQHNVKPLPQVSKEA
Run BLAST on NCBI

transcript from alignment at sc0000162:204403..206609-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013142 ID=TCONS_00013142|Name=TCONS_00013142|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at sc0000162:204403..206609- (Clytia hemisphaerica)
AAATGGTAATGTTTGCAACAATGCCCTTGGAAAAATTATTTTCATACATT
AAAGTGAGAAATGAAATGAAAATGTTCGCCCACCCCCTGTATTGATATCA
AATGGAATGGCTCAATCTAAGACGCTGTAGAAATCTGTACATTAAAATTC
TTACTTTTGATTGTTATATATTTAAAAGAAAGATAATTTTGATGATTTTT
GTATGTTTTGATTTCAATATTATTTCTTAAAATTTAACGACTGTTTTTTA
ATTGCATTAGAATATTGTTTATTGATCATTGTATTTTTATAAAAAAATTA
TATTTTTTGAAATTATCTTTATTCCTTAACATTTAAGATGTGAATTATTG
ATAAGTTATTGACTTTATACTTTGGAAGATAATCTTCAAATGCTTTTAAG
TATCTTTACTCTGTTCGGTACCGTATATTTCAATGGATGTGAATTTTCGA
GACTTTTCTTTTTCTTTCCAGAAACAAAGAAAATGAAAAGCTACGAAAAG
ATACCAACAACGGAAGATGATCAGAAACCTTTAAAAGTGAAAGTTTACAA
GAAAAGATGGCTCATACTGTTGATATTCGCAATAAATTCTTTGGCAAACG
CTGTTTTGTTTGTATCAATCACATCCATTAATAATATTGCTTGCAGATAC
TACAATATTTCACCAGCGCTGACAGATTGGGCAGGGAATGGTTTCAACAT
TGTTTATGTCTTCATAGCACTGCCATCCGCTTATTTCATGGATTCCTTTG
GTGTGCGAACCTTGGTTATATTGGGTTCAAGCTTGAATGCCATTGGTGTT
TGTTTACATCTGGCTGGTACACCAAGAGAGCATGGTATAGTGTATGTATT
GAGTGGTCAACTTATGGCCGGTCTTTCAATGGGAGCCATTCTTCAGGTTC
CAGCTCGACTTGCTACAGTTTGGTTCCCAGAGCACGAACAAGCAAAAGCA
CTGAGTTTAGCCTTTGTATTCAATGTGTCTGGATTGGCTATTGGTTTTTT
GCAGCCCTCTTACATGGTTCCAGATAGTGAAAATATGGATGAAATTTACG
ATNAGCAATTGGTTTTTTACAGCCCTCTTACATGGTTCCAGATAGTGACA
ATATGGATGAAATTTACGATGGATTATTGAAGATGAATATTTCACATGTT
GCTCTCTTAGCAGTGTGTTTGATATTTGCTTATTTATTTTTCGATGAAAA
ACCTCCATTGCCACCCTCGTATGCAAAAGCTGTTGTCGATAGTTCAACCG
TTGATGAACATGGTGAGACACCTGGCTTCAAACTATCCTTGAAATTGCTT
TTTACTGACAGAAACTTCATGCTTCTAGCCTTGGTATATGGTTTACAATC
TGGTCTGTATAGTATGTTTGTTACCTGTCTCAATGAGATGGCCAACACCA
TCGTAAGCTCTTCGCAAATCGGTTGGATAGGTTTCTTGGGCAACCTTGTC
AGCATCGTTGGCTTAATGTTATTGGCTTCCATAGCTGATAAATACAAATG
TTACAAGAAGATCACCACTCGCTTGTTCTTTGTACAAATTCTTTGCTGGA
TAGCATTTAGTTCTACTATACTGTATTGGAAAACAGCCACGTCACTATTT
GTGACGTATTCTTTCTTGTGTTTCTTCAATACCTCTTTTAACGCTGTTGG
ATTATCTTTTGCTACTGAGGTTTCTTACCCAGTGACGGAAGGGATGTCGA
CCGCTATTGTGCTTATGATTACCAACACTCTCGGTTTCATCAATATTCTT
ATTTTTGGAAGGCTTGTCGATGATGGATATGTGTTTTTGATGTGTAGCAT
TGTTACTGGAATGTATGTGGTGGCTTTCATTTTGACCTTCTTCGTCAACG
AGGATTTGAAGAGATCCAAACTTGAAGGTCAACACAATGTCAAACCCCTT
CCTCAAGTTTCAAAAGAAGCTTAGTTTAGTTTGAAAGTATAATTTGGACT
ATGGACTATTGGGAATATGATTGTCCTTTAGTATAAATCTTTTTCAGGAT
ATTTTTGTTTAAATTTTATATAATTATTATTTTGATGCTAAGCATTTTTA
GTCGAGTAAATTTCTTGATACATTTGAAATATTTTTAATGACTTTATATT
TTGTATGTATAATTTATCAAATTGTATTGGATTTTGTAACTTCAAATTTT
TACCTTTTATAAAGGCTAGTCTTCTTGGGAAATTCTGTCAGAATCTTTTT
TTAAATG

Coding sequence (CDS) from alignment at sc0000162:204403..206609-

>TCONS_00013142 ID=TCONS_00013142|Name=TCONS_00013142|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at sc0000162:204403..206609- (Clytia hemisphaerica)
ATGGTTCCAGATAGTGACAATATGGATGAAATTTACGATGGATTATTGAA
GATGAATATTTCACATGTTGCTCTCTTAGCAGTGTGTTTGATATTTGCTT
ATTTATTTTTCGATGAAAAACCTCCATTGCCACCCTCGTATGCAAAAGCT
GTTGTCGATAGTTCAACCGTTGATGAACATGGTGAGACACCTGGCTTCAA
ACTATCCTTGAAATTGCTTTTTACTGACAGAAACTTCATGCTTCTAGCCT
TGGTATATGGTTTACAATCTGGTCTGTATAGTATGTTTGTTACCTGTCTC
AATGAGATGGCCAACACCATCGTAAGCTCTTCGCAAATCGGTTGGATAGG
TTTCTTGGGCAACCTTGTCAGCATCGTTGGCTTAATGTTATTGGCTTCCA
TAGCTGATAAATACAAATGTTACAAGAAGATCACCACTCGCTTGTTCTTT
GTACAAATTCTTTGCTGGATAGCATTTAGTTCTACTATACTGTATTGGAA
AACAGCCACGTCACTATTTGTGACGTATTCTTTCTTGTGTTTCTTCAATA
CCTCTTTTAACGCTGTTGGATTATCTTTTGCTACTGAGGTTTCTTACCCA
GTGACGGAAGGGATGTCGACCGCTATTGTGCTTATGATTACCAACACTCT
CGGTTTCATCAATATTCTTATTTTTGGAAGGCTTGTCGATGATGGATATG
TGTTTTTGATGTGTAGCATTGTTACTGGAATGTATGTGGTGGCTTTCATT
TTGACCTTCTTCGTCAACGAGGATTTGAAGAGATCCAAACTTGAAGGTCA
ACACAATGTCAAACCCCTTCCTCAAGTTTCAAAAGAAGCTTAGATGCTTT
TAAGTATCTTTACTCTGTTCGGTACCGTATATTTCAATGGATGTGAATTT
TCGAGACTTTTCTTTTTCTTTCCAGAAACAAAGAAAATGAAAAGCTACGA
AAAGATACCAACAACGGAAGATGATCAGAAACCTTTAAAAGTGAAAGTTT
ACAAGAAAAGATGGCTCATACTGTTGATATTCGCAATAAATTCTTTGGCA
AACGCTGTTTTGTTTGTATCAATCACATCCATTAATAATATTGCTTGCAG
ATACTACAATATTTCACCAGCGCTGACAGATTGGGCAGGGAATGGTTTCA
ACATTGTTTATGTCTTCATAGCACTGCCATCCGCTTATTTCATGGATTCC
TTTGGTGTGCGAACCTTGGTTATATTGGGTTCAAGCTTGAATGCCATTGG
TGTTTGTTTACATCTGGCTGGTACACCAAGAGAGCATGGTATAGTGTATG
TATTGAGTGGTCAACTTATGGCCGGTCTTTCAATGGGAGCCATTCTTCAG
GTTCCAGCTCGACTTGCTACAGTTTGGTTCCCAGAGCACGAACAAGCAAA
AGCACTGAGTTTAGCCTTTGTATTCAATGTGTCTGGATTGGCTATTGGTT
TTTTGCAGCCCTCTTACATGGTTCCAGATAGTGACAATATGGATGAAATT
TACGATGGATTATTGAAGATGAATATTTCACATGTTGCTCTCTTAGCAGT
GTGTTTGATATTTGCTTATTTATTTTTCGATGAAAAACCTCCATTGCCAC
CCTCGTATGCAAAAGCTGTTGTCGATAGTTCAACCGTTGATGAACATGGT
GAGACACCTGGCTTCAAACTATCCTTGAAATTGCTTTTTACTGACAGAAA
CTTCATGCTTCTAGCCTTGGTATATGGTTTACAATCTGGTCTGTATAGTA
TGTTTGTTACCTGTCTCAATGAGATGGCCAACACCATCGTAAGCTCTTCG
CAAATCGGTTGGATAGGTTTCTTGGGCAACCTTGTCAGCATCGTTGGCTT
AATGTTATTGGCTTCCATAGCTGATAAATACAAATGTTACAAGAAGATCA
CCACTCGCTTGTTCTTTGTACAAATTCTTTGCTGGATAGCATTTAGTTCT
ACTATACTGTATTGGAAAACAGCCACGTCACTATTTGTGACGTATTCTTT
CTTGTGTTTCTTCAATACCTCTTTTAACGCTGTTGGATTATCTTTTGCTA
CTGAGGTTTCTTACCCAGTGACGGAAGGGATGTCGACCGCTATTGTGCTT
ATGATTACCAACACTCTCGGTTTCATCAATATTCTTATTTTTGGAAGGCT
TGTCGATGATGGATATGTGTTTTTGATGTGTAGCATTGTTACTGGAATGT
ATGTGGTGGCTTTCATTTTGACCTTCTTCGTCAACGAGGATTTGAAGAGA
TCCAAACTTGAAGGTCAACACAATGTCAAACCCCTTCCTCAAGTTTCAAA
AGAAGCTTAGATGCTTTTAAGTATCTTTACTCTGTTCGGTACCGTATATT
TCAATGGATGTGAATTTTCGAGACTTTTCTTTTTCTTTCCAGAAACAAAG
AAAATGAAAAGCTACGAAAAGATACCAACAACGGAAGATGATCAGAAACC
TTTAAAAGTGAAAGTTTACAAGAAAAGATGGCTCATACTGTTGATATTCG
CAATAAATTCTTTGGCAAACGCTGTTTTGTTTGTATCAATCACATCCATT
AATAATATTGCTTGCAGATACTACAATATTTCACCAGCGCTGACAGATTG
GGCAGGGAATGGTTTCAACATTGTTTATGTCTTCATAGCACTGCCATCCG
CTTATTTCATGGATTCCTTTGGTGTGCGAACCTTGGTTATATTGGGTTCA
AGCTTGAATGCCATTGGTGTTTGTTTACATCTGGCTGGTACACCAAGAGA
GCATGGTATAGTGTATGTATTGAGTGGTCAACTTATGGCCGGTCTTTCAA
TGGGAGCCATTCTTCAGGTTCCAGCTCGACTTGCTACAGTTTGGTTCCCA
GAGCACGAACAAGCAAAAGCACTGAGTTTAGCCTTTGTATTCAATGTGTC
TGGATTGGCTATTGGTTTTTTGCAGCCCTCTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007344XLOC_007344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013142-proteinTCONS_00013142-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013142-exon-sc0000162-1575043694:205597..206609TCONS_00013142-exon-sc0000162-1575043694:205597..206609Clytia hemisphaericaexon
TCONS_00013142-exon-sc0000162-1575043694:204403..205528TCONS_00013142-exon-sc0000162-1575043694:204403..205528Clytia hemisphaericaexon
TCONS_00013142-exon-sc0000162-1510915933:205597..206609TCONS_00013142-exon-sc0000162-1510915933:205597..206609Clytia hemisphaericaexon
TCONS_00013142-exon-sc0000162-1510915933:204403..205528TCONS_00013142-exon-sc0000162-1510915933:204403..205528Clytia hemisphaericaexon
TCONS_00013142-exon-sc0000162-1491911889:205597..206609TCONS_00013142-exon-sc0000162-1491911889:205597..206609Clytia hemisphaericaexon
TCONS_00013142-exon-sc0000162-1491911889:204403..205528TCONS_00013142-exon-sc0000162-1491911889:204403..205528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:204403..206609 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.15539	4.15166	1.42724	1.01174	2.01775	1.67005	2.31898	3.00903	1.81833	1.83725	1.63888	0.588206	1.02655	1.14525	2.53297	3.05547	3.03831	2.78254	1.46338	0.843629	1.99987	1.65153	5.16994	6.06176	1.6028	1.66283	1.68929	1.38677	3.89633	3.69111
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00013142 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.156e-53
Identity = 132/442 (29.86%), Postives = 236/442 (53.39%), Query Frame = 3 
Query:  504 PTTEDDQKPLKVKVYKKRWLILLIFAINSLANAVLFVSITSINNIACRYYNISPALTDWAGNGFNIVYVFIALPSAYFMDSFGVRTLVILGSSLNAIGVCLHLAGTPREHGIVYVLSGQLMAGLSMGAILQVPARLATVWFPEHEQAKALSLAFVFNVSGLAIGFLQPSYMVPDSDNMDEI--YDGLLKMNISHVALLAVCLIFAYLFFDEKPPLPPSYAKAVVDSSTVDEHGETPGFKLSLKLLFTDRNFMLLALVYGLQSGLYSMFVTCLNEMANTIVSSSQI--GWIGFLGNLVSIVGLMLLASIADKYKCYKKITTRLFFVQILCWIAFSSTILYWKTATSLFVTYSFLCFFNTSFNAVGLSFATEVSYPVTEGMSTAIVLMITNTLGFINILIFGRLVDD-----GYVFLMCSIVTGMYVVAFILTFFVNEDLKRSK 1802
            P++   +    +KV ++RW ++L+F+  S+ N+  ++   SINNI   +Y +S    DW    + + Y+ + LP A+ ++ FG+RT+ + GS+LN +G  + L G+ + H     + GQL+  ++   IL +P+R+A+VWF  +E + A S+A   N  G+AIGFL P  +VP+ ++ DE+  +  ++   I  VA L   LI   + F EKP  PPS A+++  + T  +      +  S+  LF + NF+LL + YGL +G +    T LN M        ++  G IG    +  ++G ++     D+ K YK+ T  ++ + ++  + ++ T L       +F+T   + FF T +  +G  FA E++YP +EG+S+ ++ +     G I  +  G+++D+     G +FL C  +T    +   LT F+  DL+R K
Sbjct:   67 PSSSGPEDLSVIKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKL-GSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVATL--LLILVIIVFKEKPKYPPSRAQSLSYALTSPD----ASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFT-LNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFL-CVFLT----LGAALTAFIKADLRRQK 495
The following BLAST results are available for this feature:
BLAST of TCONS_00013142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC21.156e-5329.86Feline leukemia virus subgroup C receptor-related ... [more]
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