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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013133 ID=TCONS_00013133|Name=TCONS_00013133|organism=Clytia hemisphaerica|type=transcript|length=3006bp
CCGAAACAGCAAGAACTAACAAGGTGTGCAAAAGAGGTGAACATCTGAAG
AATCTCTAACAGTCATCGATCTTAAAAGATAAAATAGTCAACATTCAGGA
TGAACGAATTGGACAAAGCACATTTACAGAAACGCTTGTCTCAACTTCAT
GAACAACGTCTGAAAGAACTTTCTTTGGAAGATGATCTTGGCATGGAGAC
AGGGTATGTCACTGACTCGTCCATCAATTCACGGAAGGgAGGGGAAGTGA
AAATCGAAGCACTGCCACTTGATCAAACTCCCATCAACAAAAGTCGCAAA
ACGAAATCTGAAAGAGATAAGCGTCGCTCAAGTCGCGTTTCTTTACTCGA
CTCCAAAAATGATTCGGGAAGCGAAAATTCATCTGAAAGCGCTACAGAAG
AAAAACAACTTCGCTATCGAAAGCGTGCCGGAAGCAAACGAATCGAGGCC
GGAAGTGAAGTAAAGGAAAGTCAAGACAGCCGGCGGAAAAGGGCCGGAAG
TAAGAACGTAAATCGGTTGAGTATCACTGTTCCACCACCAGAAGACAGCG
AGGAGAGCGCACTTAGTGATTTCCAACCAACCACCCTTCAAATGAACCGG
AAGGATATTTACTCTGGCACGTGGAATCCTAAAGAACGTGCTGTGTTGGA
CCAAGTCTTGAATAACATGGATGTAAAGAGTGATCCAAAGAAATCCTTCA
TGGGGATGTTCAAACGGCAACGATCGACAAAACAGAACAACaacaataag
gagaaaaacattGGAAAGATAGTGGAAGATACAGAAGAGGAGCACTGCAC
GGACTCTACAGGACGCGACAAATATCCTCTCAATCAATATTACAGTGACA
GTGAACGTAATGTCAAAAAACATAACAACAAAATGGGACTATTtcgtaaa
ttaaaagaaagcgTGAAACAGAGACACGAAGAAGCTTTACTGGATAGACA
ATTAGCTCATTACATGCCGTCACcaagtcaaaagaaaaaaggcATATTCA
GTAAATTTACTGCAAGTGGCAAAAAGAAAGAGAGCGGTGGTCGTTGTCGA
GCCCATTCTTCGAACGATTACGCCCGATCAGTGGGCGTTTACATTCCACC
CGAAGAAGAGAAAGGGGTGAAAGAAACCAAGCCAACAAACCNACGCCCGA
TCAGTGGGCGTTTACATTCCACCCGAAGAAGAGAAAGGGGTGAAAGAAAC
AAAGCCAACAAACCAAGAAAACAAGAGTAATTTATCCAAAGGAAAGTCAG
GATCGTTCAAGAATCTCTTCTCATCTTCAAGAGCAAAGTCCGTAGATAAC
TTGAACGGGGCTTTTGAATATTACGCTAACCCCAAACAAGTGTTTCAACG
AACACCAAGCATGTCTAAATTGAACAGTCGTGCTGCATCCATGGAAAAGA
TTGACCAGATCAAAAGATCAGTTAGCCACAAATCATTGGACCACGCATTT
GAACCTGTGCAATACACGGCTAAGGAATTATGTTACGAAGACCCAATGGT
TTATGCACAAACACGTTTCATACAACCACAGAAAGCCAACCAACGTAATA
CAGGACATTCACATCGACAGTTCTCAAGTGAGGGTTATAGTTCAGCGTAT
GAAGATGACGTGTATCGTGGTTATCAAAGTGACGTCACACCTGCTATTCA
TATGCGTCAATATGCTGCCCCACGATTCACTTTCGATCATGTACCACCAC
ACCCTCACCCTTCCTTTACTGACCAAGACCGACCTCACTCAGCTATACCT
GGAGGCTACTATCCAGCACCCCACCCACGGTATGCAGCTGGAAACTTCTA
TGCTACCCCTCAACCATACATGAACCACGCTCCAGCCCAAATGTCACCTT
ACTTCATGCCAACACATCATGCCCCTCCTCTACCTGGATACTACACGCCA
GGATACGCCACTCCAGGCGCCATGTACCCTCGATCAGGCTACGAGACACC
CAATGGATATACCTCCGAAAGTGATTATGGATATATTCAGATGTCGCCCC
ATTTCATTCAACGCCCACTCGTTGCACCCTCACAACGCCACAGTGGTTAC
ATGGCGCACCAATCACGAAAAGCAGTGCAAAGGAGTGTCTCTAAGAACAG
TTCAGCATCAGGACACAGTGGAAATTATGGTTATGCATCAGAATCGAGTT
TTTGTGATGATGAGATTTACAGTATGGTTCAACCTTCTTCGCGTTCACAA
CAAAACACTGTTCCTTCTACATCTTGTGAACCTCAAAGACAACAGCTTAC
CACTGATGTGTAGATGATTGATACGTTTCACCTATATATTATTTGAAAGT
CTAGGTTTATACAGCTAAGTTCATTACAAACCTGATCTTGGCCAATCAAA
CATTTCCGCGatcaaataattttgattctataataatttatcaaatttta
aagaatcgaggtaataagtttttgaaaaaaaattttacataatatttgat
catttttgtttctaaaaaaataagtctttaaaaattaatattccctaaaa
atcaattatttatttacaaaaaatagaTAATATATGTATTTgtaatttca
atattaaaataaaacacacTAAACACTCTTTATGTAAAATGAGGACTCCT
GTATTGTTGAGgctgtttcaatttttatgtTCATGTACAGACAAGGGGTA
AATGATCCCCAAGATGCCAGGAAAATAGCATCGCAGTTTCCTTCTTTAAT
CAAGATTTTTATTTATATACATAAATTGAAAAGTATCAATCCAGAATTGT
GAAATTAACGATACTCCTTTTCTACACACAAAATTAAATCCCACCTGGAC
TAATGTTATATATTAAAAATGTCATAGATGGCCAACAGGCTCTTTGGGTA
GGCATAATGTAACTTTATCAACCTTCTGAAAAGTATGTATATAAAAACAT
TCTAGTAGCAAACATTATATTAAGGTAATAAAAACATTACATATTTACAT
CTCCGTTAAATAAATACTATTCAACGATAAAACATTGCCCGTCCAAAACA
CTTTTT Run BLAST on NCBI transcript from alignment at sc0000162:45850..50665- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013133 ID=TCONS_00013133|Name=TCONS_00013133|organism=Clytia hemisphaerica|type=transcript|length=4816bp|location=Sequence derived from alignment at sc0000162:45850..50665- (Clytia hemisphaerica)
CCGAAACAGCAAGAACTAACAAGGTGTGCAAAGTAAGAATAACCAGTTCG
GTAATAAAAACTTCTTCCCCTGGCAGACGCGGTGGTAATTTCGAAGCCCT
GATTTTTCTTTTCTGTAACGAATTGAATTTTGAATTTCCAACAGGCTAGT
TATGAGGCAGGGATGTATGCTGATGACTAATACAAAACATTTTCCAAATC
CCTTGTCAAGATATGAATATGGGTGCATTTGGTCATATTTAACTGGTTGG
ATAATAACATAGTAAATAACTACATACATAACTTCTCAATTATAAGAATG
AGGCTCAAAATCGTCGAAAATAAGAGCAATTTTAGAAAAATACTAATCCT
GAAATGGTGAAATATTTAATTCGGGTATAAAGCTTAAACTTCCTCGATCT
TGCTCTGAGAATAAGAACATGATAAGAAATGATGAAGGGTATGTCCGAGC
TTAAAGTTGAAAATCAACCCTTATTTGAGAGAAATTCGTTGATATTTTTA
AGACCGAGCGACTTTTCCCAAATTTTAATTAATTTTCATCAATATTTGCT
GGTTCTTGTGAAAAATAGTGCATTCGGTTTGGTCTGTGACATCGGTAAAA
ATGCGATGATTGAATAAAACAGAATATCTCATGAAAGACCAACAAGAAAG
TATAATGCTTTCCCTACTGTGTACTTTGCGGAATTTTGTTTGGCCCACTA
CAAAAAATGCCTGAAAACTATTCAATATTGCAGGGCCTATTGAAAAGAAG
AAGTATTTTTCAAAAAGTAGAAAACTGGCCGAGAAGTTGTATCGGAATTT
TTGAAATTGGAAGAGAAGATATGAATAATTGAAGAGGTGTTTTATCTTTT
GGTTTTTTTTTCAGCCCAATGACTTGTATGGGAAAGGGATGAAAAATTCA
TGTTATGTTTTAATGTTTATGACGTCAAAACAGTGAAGCCCTTTGTTTTT
GCTTGATTCGATTTAGCTTCCTCGGAACATAAATAATGAAATGAAACAAT
AAGTCTGAGTAAAAGCATAAGAAGATGACTAAACCCTTCTCTTCTGTCTT
TTCAACAGAAATCTTCTCATTACTGTTCAAACGCTCACCACCGAACATTG
TCACGCGCTCTTTTTCCAATTTGTAACATTAGAGAGGTGAACATCTGAAG
AATCTCTAACAGTCATCGATCTTAAAAGATAAAATAGTCAACATTCAGGA
TGAACGAATTGGACAAAGCACATTTACAGAAACGCTTGTCTCAACTTCAT
GAACAACGTCTGAAAGAACTTTCTTTGGAAGATGATCTTGGCATGGAGAC
AGGGTATGTCACTGACTCGTCCATCAATTCACGGAAGGGTATGTTATATT
ATTCTTGCTCTCTAGTAATAGTCTGGTAAAAGTTAGGATACGAGCTTACT
GCATACTCAGGGTATTTGAAATAATTGACTTTGTTCAGAGTAGAGACATT
ATAGCGCCCGAAATTTACCTTCAAATGATACTTAGGACTAAGATTACAGA
GACAGGGGTGTAAATTATCTACTAGGAGAATTTAGTTTAAAACTTTGGCA
AAAGTTTTGTTACACCTCCGCCGTGTTTTCTGTCCGGGGAAACATAGTTA
ACGATTGTGGCCAAGAAGACGAAGCGACGAGGGTGTGCATCATCTTCCCC
CCCCCCTATAAGAAAGCGTAGACATAGTCCGGAAGAGGTTGTCTCCTTCT
TTACAAAAAGCCGTCCAGGGGATCTAAAATTTGTTTTGACTTCCTTTTCC
TGGAAAAAAATTCTTATTTTTGTTTACAAGGAAAATTGAATAATAAATGA
TGAATCATCTAAGGTGATGATTTTTCGTTTCCTTATTCAGGTTTTCGTCT
CCATCTCACTGTCAACAATCTTGAAGCGTTTTTCGAGATTTGCAAACATT
TTCTCTAACTGTTTTTATACGTCATCTATTACATTTCGATTCGATTGACC
TTTGAGATGACTTATACTGTTTGTTGCGTCATCAAAAAGCATGAAAAATA
GTATTCACTTCAATTCCTATAAGCTTGTACCTTTTTTTTACCTTTTAGGA
GGGGAAGTGAAAATCGAAGCACTGCCACTTGATCAAACTCCCATCAACAA
AAGTCGCAAAACGAAATCTGAAAGAGATAAGCGTCGCTCAAGTCGCGTTT
CTTTACTCGACTCCAAAAATGATTCGGGAAGCGAAAATTCATCTGAAAGC
GCTACAGAAGAAAAACAACTTCGCTATCGAAAGCGTGCCGGAAGCAAACG
AATCGAGGCCGGAAGTGAAGTAAAGGAAAGTCAAGACAGCCGGCGGAAAA
GGGCCGGAAGTAAGAACGTAAATCGGTTGAGTATCACTGTTCCACCACCA
GAAGACAGCGAGGAGAGCGCACTTAGTGATTTCCAACCAACCACCCTTCA
AATGAACCGGAAGGATATTTACTCTGGCACGTGGAATCCTAAAGAACGTG
CTGTGTTGGACCAAGTCTTGAATAACATGGATGTAAAGAGTGATCCAAAG
AAATCCTTCATGGGGATGTTCAAACGGCAACGATCGACAAAACAGAACAA
CAACAATAAGGAGAAAAACATTGGAAAGATAGTGGAAGATACAGAAGAGG
AGCACTGCACGGACTCTACAGGACGCGACAAATATCCTCTCAATCAATAT
TACAGTGACAGTGAACGTAATGTCAAAAAACATAACAACAAAATGGGACT
ATTTCGTAAATTAAAAGAAAGCGTGAAACAGAGACACGAAGAAGCTTTAC
TGGATAGACAATTAGCTCATTACATGCCGTCACCAAGTCAAAAGAAAAAA
GGCATATTCAGTAAATTTACTGCAAGTGGCAAAAAGAAAGAGAGCGGTGG
TCGTTGTCGAGCCCATTCTTCGAACGATTACGCCCGATCAGTGGGCGTTT
ACATTCCACCCGAAGAAGAGAAAGGGGTGAAAGAAACCAAGCCAACAAAC
CNACGCCCGATCAGTGGGCGTTTACATTCCACCCGAAGAAGAGAAAGGGG
TGAAAGAAACAAAGCCAACAAACCAAGAAAACAAGAGTAATTTATCCAAA
GGAAAGTCAGGATCGTTCAAGAATCTCTTCTCATCTTCAAGAGCAAAGTC
CGTAGATAACTTGAACGGGGCTTTTGAATATTACGCTAACCCCAAACAAG
TGTTTCAACGAACACCAAGCATGTCTAAATTGAACAGTCGTGCTGCATCC
ATGGAAAAGATTGACCAGATCAAAAGATCAGTTAGCCACAAATCATTGGA
CCACGCATTTGAACCTGTGCAATACACGGCTAAGGAATTATGTTACGAAG
ACCCAATGGTTTATGCACAAACACGTTTCATACAACCACAGAAAGCCAAC
CAACGTAATACAGGACATTCACATCGACAGTTCTCAAGTGAGGGTTATAG
TTCAGCGTATGAAGATGACGTGTATCGTGGTTATCAAAGTGACGTCACAC
CTGCTATTCATATGCGTCAATATGCTGCCCCACGATTCACTTTCGATCAT
GTACCACCACACCCTCACCCTTCCTTTACTGACCAAGACCGACCTCACTC
AGCTATACCTGGAGGCTACTATCCAGCACCCCACCCACGGTATGCAGCTG
GAAACTTCTATGCTACCCCTCAACCATACATGAACCACGCTCCAGCCCAA
ATGTCACCTTACTTCATGCCAACACATCATGCCCCTCCTCTACCTGGATA
CTACACGCCAGGATACGCCACTCCAGGCGCCATGTACCCTCGATCAGGCT
ACGAGACACCCAATGGATATACCTCCGAAAGTGATTATGGATATATTCAG
ATGTCGCCCCATTTCATTCAACGCCCACTCGTTGCACCCTCACAACGCCA
CAGTGGTTACATGGCGCACCAATCACGAAAAGCAGTGCAAAGGAGTGTCT
CTAAGAACAGTTCAGCATCAGGACACAGTGGAAATTATGGTTATGCATCA
GAATCGAGTTTTTGTGATGATGAGATTTACAGTATGGTTCAACCTTCTTC
GCGTTCACAACAAAACACTGTTCCTTCTACATCTTGTGAACCTCAAAGAC
AACAGCTTACCACTGATGTGTAGATGATTGATACGTTTCACCTATATATT
ATTTGAAAGTCTAGGTTTATACAGCTAAGTTCATTACAAACCTGATCTTG
GCCAATCAAACATTTCCGCGATCAAATAATTTTGATTCTATAATAATTTA
TCAAATTTTAAAGAATCGAGGTAATAAGTTTTTGAAAAAAAATTTTACAT
AATATTTGATCATTTTTGTTTCTAAAAAAATAAGTCTTTAAAAATTAATA
TTCCCTAAAAATCAATTATTTATTTACAAAAAATAGATAATATATGTATT
TGTAATTTCAATATTAAAATAAAACACACTAAACACTCTTTATGTAAAAT
GAGGACTCCTGTATTGTTGAGGCTGTTTCAATTTTTATGTTCATGTACAG
ACAAGGGGTAAATGATCCCCAAGATGCCAGGAAAATAGCATCGCAGTTTC
CTTCTTTAATCAAGATTTTTATTTATATACATAAATTGAAAAGTATCAAT
CCAGAATTGTGAAATTAACGATACTCCTTTTCTACACACAAAATTAAATC
CCACCTGGACTAATGTTATATATTAAAAATGTCATAGATGGCCAACAGGC
TCTTTGGGTAGGCATAATGTAACTTTATCAACCTTCTGAAAAGTATGTAT
ATAAAAACATTCTAGTAGCAAACATTATATTAAGGTAATAAAAACATTAC
ATATTTACATCTCCGTTAAATAAATACTATTCAACGATAAAACATTGCCC
GTCCAAAACACTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013133-exon-sc0000162-1575043694:50634..50665 | TCONS_00013133-exon-sc0000162-1575043694:50634..50665 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1575043694:49328..49533 | TCONS_00013133-exon-sc0000162-1575043694:49328..49533 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1575043694:45850..48617 | TCONS_00013133-exon-sc0000162-1575043694:45850..48617 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1510915933:50634..50665 | TCONS_00013133-exon-sc0000162-1510915933:50634..50665 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1510915933:49328..49533 | TCONS_00013133-exon-sc0000162-1510915933:49328..49533 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1510915933:45850..48617 | TCONS_00013133-exon-sc0000162-1510915933:45850..48617 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1491911889:50634..50665 | TCONS_00013133-exon-sc0000162-1491911889:50634..50665 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1491911889:49328..49533 | TCONS_00013133-exon-sc0000162-1491911889:49328..49533 | Clytia hemisphaerica | exon |
| TCONS_00013133-exon-sc0000162-1491911889:45850..48617 | TCONS_00013133-exon-sc0000162-1491911889:45850..48617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:45850..50665 - |
Blast
The following BLAST results are available for this feature:
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