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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013120 ID=TCONS_00013120|Name=TCONS_00013120|organism=Clytia hemisphaerica|type=transcript|length=1279bp
CAAGCATAAATTTAACCTACATTTAAGCTGTCGATAGAGGATGAAAATAC
CTACTTCGAAACTTATCAAGGAATCTGGGAGCAAATGAAAGAATTCCACT
GGatACGAATGCAGCTTGCTCCGTTCTTGGAAAGAATCATTATTCTTGAT
CGAGTGGCCTTCCTATTAGAAAAGgAATTTACGGACGTTGCAGCTATTCG
TGTTTTTGATCAAGTCACTTCACCACGTTGCTATGCTATATTCTGCTCTC
ATTAAAGAGCTATAAACGTGGCAAAATAGAGATATCGAGAAAATCGGATT
ACAGTGTAGTTTTTTTAACCatcgatttttttcataataaagaaaaatat
acaaataaaTGTCACGTGACATTCTTGAGTATTTTATGACTTTCAAACAC
ATCAATAGACTAATGACTGGCTTACATTGCCTTTCTATATATTGCCCCAA
CAAGTTTCGAACCCTTTTGATAACCATTTCCTTGGGCAGCCGTACTTGAT
TGAGCCTCGAAATGAAGTGAGATTAGTTGTAATGTAAAACATATCTTTAT
CTACAGAAAAAGGTATCTGCCTATATACTGTAACAATACGAATTAAAGCA
ATCTAATCTAAGTTTATATCTAATAATGATATAAACTATTGTTGGTAGTT
TTATCATTATCAGTCGATGTAATTTTAATGTCTCACTAGTTTCTGTGGTt
agttttgcaaaaaaaaggagtATTTTAGGTGTGTTATCAATTTTCTGTTG
ATTGGTTTAATATACAATCTAATCATAATGCCGTCACAACATTTTAAATG
AGATTATCATTGCGTATTTGTGCCATCGACAACAAACCATTTAAGTTGGA
TTTAGCTGTGGCATCATGAATAATAAATTCGTTATTAAACCTTTTAATTA
CTAGTTCGATGGCTTAAAAGACCcaattttcttgtgttttttatATTTCC
ACTATTCACCCAGAATGTAAAGAAATCCTCTGTCCAAGCCACATGATATA
AAAAAGCTCGATATATTGACGTTAAACGAGGAGCTGAATTTAGGGTGATA
TTATGACAAAGCGAGTGCAAGAATTATCCATAAATATTCGGACAAAGAAA
GCAAAATGACAgctataaatttattttaacgTCACAGGAGAGACAGCTAA
CCAGAAAAACATGTTTTCTAAAATTGTTGAATCATTATTGAagcaattaa
aaataatttttcacctCCTTCCTATTGTAATAGGAAGTCTAGCTCTCCAA
TCGATTTGTTGAAGGAATACGAGAATAAG Run BLAST on NCBI transcript from alignment at sc0000162:338731..347447+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013120 ID=TCONS_00013120|Name=TCONS_00013120|organism=Clytia hemisphaerica|type=transcript|length=8717bp|location=Sequence derived from alignment at sc0000162:338731..347447+ (Clytia hemisphaerica)
CAAGCATAAATTTAACCTACATTTAAGgtaattttttataatcaaCCAAG
CTTGATAAGGCTTACGGGCTCAaatttgccaatttttttcactatctcgt
aaagtaaaaactttattttatttttttattttatagcaatatatttcaca
ggtctattgacgtcattgacctctatgaaacagaactttttcctcccatt
cttttatcaaacgctctttgaagacttgtaaggatggtgcttcaacTATA
TAttcttctagatcattccaaggtttcacactcctttaaaaaagagagtt
gctttaccgtcattagcaaagatcctttgaagctcgtaatcatgctgacg
tcgtggtcgtgtccgaggagtaaatttctctgaccttatagactcgtcat
aaatgtggaggttcttgaaaacttccaccatatcaccaacttgccgcTTG
GTCTTTAGGCTGggtagattgatgagtcgtagccgatcttcgtatgagta
gtttctatagcaactaactagccttgtagctcttcgttggacgccctcga
ttgcattgatatgtttgattagccttggagaccatactacatgtgcatat
tccaaatggggtCTGACAAATGCAATGGAAAGCGTTCGAAACATATCTGG
TGAGGGAAATTTGAAGCTCCTGCTAATCAAGCCAACGATAGAGTTAGCTT
TGATTTGACTggattttactgaatatatgggcttcaaaggtcaggtcact
atcgattatcaatcctagatctttttcttggtcaacatGTTCTAGAACAG
ATCCTGCTATGGTATAGGGATGGGcatatttgatgttccaaaatttaccc
agtgttaaaacatgacatTTGGtcggatgaaattctaaaagccagTCCTT
TGACCAATTTCCCATGGCATCAATGTCTTCCTGTAGCCTGAGCGCATCTT
CTTTATTTCTTCGACCAGTTTTGTATCGTCAGCAAACAGGAACATTTCTA
CTTTCGTAGCCTCTGGTAAATCATTGATGTACAAAACGGAAAGTAGTGGA
CCAAGTACACTTCCTTGTGGAACTCCACTCATAACTTTACATCTTCTCGA
CAATGTTCCGTTTACCTTTACATATTGATAACGGTCAATGAGAAAGGACT
GTATCCAGTTGAGCTCCGACCCTTTGACCCCATAAGCATTCAGCTTTTTC
AGCAGTCTGCGGTGTGGTACggtgtcaaattcaaaataaatcacGTCAAC
TACTTTATTGTTTGAGATCGAATCCGCACATTTATCAAGGTATGTAAGTA
ATTGTGTTACCGTTGATCTCTTTGGCATGAACCCATGTTGTTTACTGGAA
AATAGTTTTTCATTTACCAGATGTTTCATGATTTGGTCCCTTAGCGCTCT
TTCCATCAGTCTGTGATGGATGTAAGACTgactggtctgtaattttcagC
TAGATTTTTGCTCCCTTTTTTATATATTGGTGACACATGTGCAACCTTCC
ATCCGTCTGGCAGAGTACTTTCATCAAATGATTTAGTCATGATTGTGTGG
ACGGGACAGCTATGTAATCCGCTAGCTCCTTCAACATAATTGGATGAATT
TCGTCCGGACCAATTGATTTATTTGGGTTGAGATCTTTAAGTTCTTTTTT
GACCATTTCCAAAGTGAGATTAAGCTCTACTTTAGAATCGGTGCGTGATT
GAAACTCCGGAAGACTATCATCGGGCTCTTTGGTGAATACACTACAGAAC
TGATCCTGTATATATTAGCTTTGTCTTCGTCCGTATAGCAAAGAGAAGAT
TTATCCTTTGGGTTACGCAGTAGAGGCAAGATCCCAGATTTTGTTTTCAT
GGAGTTACgaacatgtctccaaaatctttTTAGACTCCTCTTTGCTTGCC
CACATATCCGTTTTTCAAGGTCCCTTtttaaatgtctttaaaaattccaT
GAAGGACCAATTGCGAAAGTtcatgctcgcgaaaaattcttgacaaaata
aaaaatctgtaaaacttcaaacttttatgacaatttttagcctgctaaaa
gactaataagtccaaagacaaatgtttcaagccaatccaagaagtatttg
tccctctaagccattttttatgggaaaattctcaattttacgtcttgatt
cgtgaaagtttatgctcgcgaatttcgcaatttttcgtcctcgcgaaagt
ttctgctcgcgaaagtttgtacgcctaaagtaactTGCCAGCTGGAAATA
TTTCGAATCCTAGAAGAGATcatgaaaattagtttccttgaAATGATCTT
TTCTTACATGCcagctagaaatttttttaacactgcaaAGACGCTTCATA
GAACAGATTACGTTTTTCCTGTTGGACATAAATTAGAAAAAAGAGTTTGC
AAATACGGACTTTTCAGCGAGAccataccgggtgtgccacaaataagtta
ccctctttgaatTTATATTGAAGGCAGTAgcagaaagatttttcaaagat
tgtttcggaaTAATTTAGaagaaagcctaacttaaaatttggtgtattac
ttttggacctaccccggtggaggtcctataaattaaccgttgtatgttcg
ttcgttcgtccgttcgttccttagttactagcttttctcgatattggctc
atgattttttgcacaaagatgcataactataaaccctcgaatgtgacgga
gcccgattttcgaaaaaaatttttagatgaAAGTAAggtcataggtaaaa
gatggctcaagcagatttttgcgaaaaaattttgttggctcaaaaaacgc
atgtttatctataagaatcactattaataagcatacatcaatgttcttac
tcaaattactcaattattatgatgagatagatgtttttttttatcaggag
ggcttacttttaaataatatatgtgtttagacatgaaattttggttgctt
ggcgtgttttatagaaaaactggccgaactcgatatttttttataagcac
attatcaattacttaggtattagcttttctcgagattggctctttattgc
acaaagatgcataactataaaccctcgaatgtgacggagctcgatttttg
taaaacaaatttggggtaaatttcagctaaaaagagggttttttggactt
tgtgaaatattggatcattgtttttttctgattttttgcatgaaagtagg
taaaacatggctcgagcagatttttgttaaagatgaatttttcagctcaa
aaacgcatctttatctataagaatcactattaataagcatacatcaatga
tcttaaaattactgaattttttgatgagatatgtttttttgctcacgaag
tcttgaatatgaaagaatatttcaagagcatgaaattttggtttctaaac
gtttttttataagaaacaaacgactcattttgatagatcgtcactatttg
tgttctgactgattttttaatggtcacgctcacgtagatataaattataa
atgtgttaaatgcataaccaggtaggtccataaaagtatcacttgtttaa
ttTTGCTTCATTGGttaaaaagttatgttcaaaaaaatatcaatctttaa
aaatgtcaaaaataaggAGAAAACTAGATTATTAAATTGGTTGTAATGAA
TAGAGACACAAAGCCATTTTATGCATCAGGAAATGTATTTCCATTATGTA
AAAAGCACTTCTTTACAAGGTTAGGCATCCCTGTAAAAACATTCCATCAT
ATGTGAATCGATATGAGCTGCCACAGCTCAAACAAGGCATTTTTCTCAAA
GCTTTCACCTTCTCCGCCTTTCTCGAGGATGATGCACATACAGAAAAACT
TTCGGAAACTCTtggaaagatttgaaaattttgtggggGTTGAAGCATCT
TATTTATGCCGAGGGGAaaacagaagtaaaaaaaaacaacaaataaacaA
TTGCAATAAAGAATACATAAAGAGTGTTACAAGGAGCAATACTTGGTAAA
AGAAGTCATAAATTGTCCGTATTTGCAAACTCTTTTTTCTAATTTATGTC
CAACTATGAAGCGTCTTTGCAGTGTTAAAAAATTTCTAGCTGGCATGTAA
GAAAAGATCATTTCAAGGAAACTAATTTTTATGATCTCTTCTAGGATTCG
AAATATTTCCAGCTGGCAagttactttaggcgtacaaactttcgcgatca
gaaactttcgcgaggacgaaaaattgcgaaattcgcgagcataaactttc
acgaatcaagacgtaaaattgagaattttcccatgaaaaatggcttagag
ggacaaatacttcttggattggcttgaaacatttgtctttggacttatta
gtcttttagcaggctaaaaattgtcataaaagttacatattattcaaagt
ttgaagttttacagattttttattttgtcaagaatttttcgcgagcattt
aaaaatcgaaaaatcttcCCATATGGCATTTATGAGTTTTTCGTTTGGTT
TTAAACTAAAATTCTTCTTCTATCACTGTCCCATCATTACTGCTTTTGTG
AGTGTGGAATCTATAGTGTTTTAAATGCACATAACTTTAcatttttctgt
ttattttgtagctCAGAGTACACGTGAATTTTCCACGtgaaattttttgt
acaaatttccctgatttttactgaaaaatttACTGATTCTCTGAAAATTC
GGGTTTGTTTGAAAGTCGAGAAAAATTTGCATGAGTGtgtgaatttcgaa
aaagaagatgcgtgaatgcgtgagtCCGCTGGGGGAGGGGGCTCTTTTAC
CTTTACTTTGAATCCATCATTTTGCTTGTATGAGCATCATCTTCAATACG
GCCCTTATCAAGGGGGATAGCTTACGAAAACAATTCATCGTCCTTAACCG
AAACCGTTGCTCTGACTTTAATTAAAAATTCATTGgtgaaaagtgacgaa
ttttttggaaattggagaaattttttgCCAACGAATTTTCCGAattgctt
atttttttttactttaattaACTTTCACGAAATTTATCAGGTCAAATGCT
TTCACTCTATTTTCAGCTGTCGATAGAGGATGAAAATACCTACTTCGAAA
CTTATCAAGGAATCTGGGAGCAAATGAAAGAATTCCACTGGGTAACTATT
TTCTTGTATGATGATTGGTAAATTATATATCTTGGAAAAATGTGACTGAA
AAATTTTGCACTAAATGTTCGAAAAGTTTTGGACCCTTTTTTGGGCATTT
TATGATGGCGTTAATTTTCAGTACAAAACCGTTCAAAACAGATTTCTTCG
ACTGTTTTATGTGAAAGATCAtgattaaagggacataaaagtagtaaaat
gtaagcgcgaaccacgtgtcattaaagagaacaattaaaatcacgtgtcc
aaaacaaacttgtaaaacaattgaacaatcaaaattagctatatttggtt
tgatttttggacctacctccgggtaccccggtagaggttctataaattaa
cccatgtccgttcgtccgtctgttaccagcttttctcaggattggctcat
tagttttttctgattttttgcacaatgatgcaaaaggGGAATGCCCAGAA
catgacggagcccgatttttgagaaaaaatttatttgggcaaatttgggc
caaaaactacctaaaaatgatgtgacggagccagatttttaggGAAACtt
gttttgggcaaatttgggccaaaaacagcttaaaaggttttttgggcctg
gatggtttaagtgattttcgtatttggggaaattcctttttaccatttta
cattattcaacacacaagctttatttttccattctgaatttttgtacaat
tattgtcacttttttcttattttcatctgatgttaatcattaggtaggtc
cattcagcatgttgcttgtttattttgacatgtgacatttgttttgattt
ggtatccgctgcatacagtttgtttacaaatttcgcaagtactgttaagG
AAGTAAGGTGAAATTTGTCAGTAAGTTTCcctaaaatatttcgaaatagC
CTAAAATTCACCCTCCATATTTcctggtgacgtcatcaaatagcAAGTGA
GATTTACATTCTCAATCCATGCTCAAAAGATGTAACTTAAAACGAAGTAA
CTGAAATTTTGGCACTTTTGggataaacaattttttttgtgcCTTTTAAT
ACAATTATTAGAGCTTCTTTGAATGTCAGTAAATATCTAAAAAGTAGTTT
ATTCgacatttttgagttttgtttgaaaatactttacggaaaatttcttt
ccaaataTGTATTCATTTGGACTGATGACACACAAATCCGTGAAATTagt
gaaatttaatccccgcgaaattttattcCTACCTTTGAGCCTGTTCTAAC
AATGTAAATCTTACTGCAAAGTTAATGACTTCACTAAGAAAATTGACGGA
TTTTTCGCAAATTCTGACCATTTTTGGGGTTTAATTGacacaattttaaa
aacaattcaGTTTTCTGTGCTAGTATTATGTTAGTTGGTTTAGTGGAAAA
AGTAATTCTTACACCCGTAGTTGGGAATTCTCTTTTCGTCACATCGAAAG
ACAAAGGATGTTTCAGAGAAAAATCATAAGAATAAAAAAGGGGAGTAAGG
GACTGAGTTCGAGTTTGGAAAAGGGGTTGTCAAGAGGGTGTAATTTGGCT
CATTCACCAATAGAATAGCAGAAAATATTCAGAGCCAGATTTTTTTGCTA
GGGTTTTGTACTGAAAATTGACATCATAAAATGCCTCACCATGAGTCTAA
AACTTTTGGAATTGATCACTCGgttaagttatggcatgtctcaaaaactg
aaaattaccataatttttagatcgcatattggtcgacagaaaatgaccaa
acaaatgactgaacatgaagggtactatcatgtagtttctaacctgatgt
gaaCCTAATTTTTGTTTcgctaattttcgcgagaaaccgcaaaaactgat
tatgacgtcataatcgatgacgtcataaaaactaaaaattgaatttccca
AGAatcgtcttcaaactttcatcaaagatgtatctcactaatgtcgatca
tttgaaaaaaaatttttttgaagttttgatgacgtcagcagaaattagtg
aaaatgaaaaaatcctattttttgctgagGTAATcagaattttgagaaaa
tcttttttcaaaatgcacAGGTTTTTTCTCTTGGTTCTCATATTTTTCAG
GGTTTCGGTCATTGAGAGCTAATTAAtccttcctttttttctttttctag
atACGAATGCAGCTTGCTCCGTTCTTGGAAAGAATCATTATTCTTGATCG
AGTGGCCTTCCTATTAGAAAAGGTAAGGCGAGTCTTTCCCCGATACAATT
TTGATATATTGAGTTTCGATCTCCAAAGGCTATaatccaaaaattttgga
cAAATATGTTTTTCCTATATGGTCAAAAATACATCAGAAAGTTATAAAAT
TCATTTTCGGACTTCTATCCGTTTTAAAACACAAGAGAGGATAACCTATA
CTAGCCGTCAccagctttttttctactcagAGAGAGGAGTGaatattatt
ttcctttttcaggAATTTACGGACGTTGCAGCTATTCGTGTTTTTGATCA
AGTCACTTCACCACGTTGCTATGCTATATTCTGCTCTCATTAAAGAGCTA
TAAACGTGGCAAAATAGAGATATCGAGAAAATCGGATTACAGTGTAGTTT
TTTTAACCatcgatttttttcataataaagaaaaatatacaaataaaTGT
CACGTGACATTCTTGAGTATTTTATGACTTTCAAACACATCAATAGACTA
ATGACTGGCTTACATTGCCTTTCTATATATTGCCCCAACAAGTTTCGAAC
CCTTTTGATAACCATTTCCTTGGGCAGCCGTACTTGATTGAGCCTCGAAA
TGAAGTGAGATTAGTTGTAATGTAAAACATATCTTTATCTACAGAAAAAG
GTATCTGCCTATATACTGTAACAATACGAATTAAAGCAATCTAATCTAAG
TTTATATCTAATAATGATATAAACTATTGTTGGTAGTTTTATCATTATCA
GTCGATGTAATTTTAATGTCTCACTAGTTTCTGTGGTtagttttgcaaaa
aaaaggagtATTTTAGGTGTGTTATCAATTTTCTGTTGATTGGTTTAATA
TACAATCTAATCATAATGCCGTCACAACATTTTAAATGAGATTATCATTG
CGTATTTGTGCCATCGACAACAAACCATTTAAGTTGGATTTAGCTGTGGC
ATCATGAATAATAAATTCGTTATTAAACCTTTTAATTACTAGTTCGATGG
CTTAAAAGACCcaattttcttgtgttttttatATTTCCACTATTCACCCA
GAATGTAAAGAAATCCTCTGTCCAAGCCACATGATATAAAAAAGCTCGAT
ATATTGACGTTAAACGAGGAGCTGAATTTAGGGTGATATTATGACAAAGC
GAGTGCAAGAATTATCCATAAATATTCGGACAAAGAAAGCAAAATGACAg
ctataaatttattttaacgTCACAGGAGAGACAGCTAACCAGAAAAACAT
GTTTTCTAAAATTGTTGAATCATTATTGAagcaattaaaaataatttttc
acctCCTTCCTATTGTAATAGGAAGTCTAGCTCTCCAATCGATTTGTTGA
AGGAATACGAGAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013120-exon-sc0000162-1491911889:338731..338757 | TCONS_00013120-exon-sc0000162-1491911889:338731..338757 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1510915933:338731..338757 | TCONS_00013120-exon-sc0000162-1510915933:338731..338757 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1575043694:338731..338757 | TCONS_00013120-exon-sc0000162-1575043694:338731..338757 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1491911889:343797..343871 | TCONS_00013120-exon-sc0000162-1491911889:343797..343871 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1510915933:343797..343871 | TCONS_00013120-exon-sc0000162-1510915933:343797..343871 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1575043694:343797..343871 | TCONS_00013120-exon-sc0000162-1575043694:343797..343871 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1491911889:346031..346102 | TCONS_00013120-exon-sc0000162-1491911889:346031..346102 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1510915933:346031..346102 | TCONS_00013120-exon-sc0000162-1510915933:346031..346102 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1575043694:346031..346102 | TCONS_00013120-exon-sc0000162-1575043694:346031..346102 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1491911889:346343..347447 | TCONS_00013120-exon-sc0000162-1491911889:346343..347447 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1510915933:346343..347447 | TCONS_00013120-exon-sc0000162-1510915933:346343..347447 | Clytia hemisphaerica | exon |
| TCONS_00013120-exon-sc0000162-1575043694:346343..347447 | TCONS_00013120-exon-sc0000162-1575043694:346343..347447 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:338731..347447 + |
Blast
The following BLAST results are available for this feature:
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