TCONS_00013094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013094
Unique NameTCONS_00013094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013094 ID=TCONS_00013094|Name=TCONS_00013094|organism=Clytia hemisphaerica|type=transcript|length=2917bp
TAAAAGATGTACTACTCGAGTTATGATAATATATGATAGATATTTCATAT
ATATGCAAGCTgacaaaacaataacaattttACCTCGAAATTGGATATAT
GTCCCCTAAAAATAATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATT
GAAATAtggaaaacaataaaaatagaaGCAATCCTACAGAGGGTCAACAG
CTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAA
AATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGA
CCATGTTGGCGGCTTGTACAGTGGGGCCGGGAACCGTAGTCACTTGCGCA
AGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGCGTTGATTTTTGC
TTCCATTCTCTCATATACTTTGCAAGAAGGTACAGCAAGACTGACAATAA
AAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGT
CGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGT
ATTTCTTGGAAACACTTTTTATTCATGCAACAACTGGGCAGGTGGCATGT
CCGCCATCTACGCACTACCCGGTGCTGGAAATACGGTCGGACTACGTGTT
GGTGCTTGTTTTGGGTATGGTTTCATTGTCATCGCAATTTCATTGGCTGA
TAAAACGGATTCACTTGGAGTAGGACTTGGTGTAGTTATGATTGCCATGG
TGATATTATTCCTGGTAGTTGTCGTTAAACTAGGTTTAGATGGTGCACGA
TTCGCTAAAGGATTGCTGCCGATCAGTATGCCAGCAGGATCCACCAACAT
TGTTTTAAGCTTGGTAGGAACAACTGCTATCGGCTTCAACCTATTCTTAG
GTGGACAGATGGCAGAAGGGAAAACGCTTCCACAAGCACAAAGAGGGATT
GCATTTTCAACAGTAATGACTCTGATTGTGTCAGTCTTAATCATGATTGT
TGGAGATGGTACAGAGTTACAGAAAGGGTTATTCACCATCGCCAACTTGT
CTGGTACTGTAGAAAATCTGACTGGAGGTGCTGGTCTTTGGATATTTTGT
CTGGGCTTCATTGCAGCCGCTTTAAGTTCCATGTTAGTGTGCCCGTTAGG
ATCAGTGATGACTTGTGAAAGCGTTTTCAATATTTATGCGGAAAATGACG
AGCAGTCGGCAATGGAGTATAAGAGCACTGGAGAGAAGGAACAGGATCAA
GGTACAAAAGAAGGGGAGCAAGTTATTCAAATCCAAAGTGAAGGCCAAGA
AAGATTGTTTCCCAAGAAATATGCACGTGCTTTGATGGTCATAATGGTAT
CCGTAGCTGTGATTGTGAACGCTGCAAATGCACCACCTGTTAAAGTCATC
TTGGTCGCTCAAGTGTTCAATGGTTGTCTTCTCCCCTTCTTTTCTATCTG
TCTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTGCTCCACAAA
AAGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATAACTTTGTTC
CTGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGACTACAACTAA
TGGTCATATCTTGAAATCCACATTTGACACCatcaaatttagtttttctg
gAGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTAGTCTA
GGAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCT
AAGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTATAGAAC
CCCCTCTAATATATCTATACATGACAAAAGAAATACAAATTATCCTCGAC
TCTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACAAATACCACG
AGCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGT
ATAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGAACTAA
TGGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatttttgtt
tacttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACACAAAGA
Tagaattttaagaaagaaatccttaatttttaaaattgcattttcgattt
tcatttttaagctCAATGGCCTATACTTTAGACGTAAACAATAAGAGTCA
TAGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaatacaaaaat
atacaaaaaacaaatataaacctTCCTTTTTGATGACCATCCCACCCTTT
TTTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCGCTGGCATTT
AGTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTAATGGCCAAT
ANcaaatttagtttttctggAGTGATTGCGGTGGCGATTAtgctttgttt
gtttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCT
TTAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATGGTGAATTTT
ATTAGTAACACTATAGAACCCCCTTTAATGTATCTATACATGACAAAAGA
AATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCG
AAGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAG
AACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATTTTACTTGAA
TTCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGAATCGATAAA
TACTAAAagtatttttgtttacttaaatTTTGTTCCAATATTTCCCCTAA
CCCTATAGACACACAAAGATagaattttaagaaagaaatccttaattttt
aaaattgcattttcgat
Run BLAST on NCBI

transcript from alignment at sc0000162:265619..270834+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013094 ID=TCONS_00013094|Name=TCONS_00013094|organism=Clytia hemisphaerica|type=transcript|length=5216bp|location=Sequence derived from alignment at sc0000162:265619..270834+ (Clytia hemisphaerica)
TAAAAGATGTACTACTCGAGTTATGATAATATATGATAGATATTTCATAT
ATATGCAAGCTgacaaaacaataacaattttACCTCGAAATTGGATATAT
GTCCCCTAAAAATAATACTGCGGCGGAGAAGTACTTATGAAGTGGCGATT
GAAATAtggaaaacaataaaaatagaaGCAATCCTACAGAGGGTCAACAG
CTTTTACAGACTGAAAACTGCAACAGAGGGGAGAGTCATACACGCAGCAA
AATGAGGAATAGCAAGATTTTCAAAGAGATTGTGAGCCTTCTATACTGGA
CCATGTTGGCGGCTTGTACAGTGGGGCCGGGAACCGTAGTCACTTGCGCA
AGGGCCGGTGCTGAATTTGATTTGAACTTGATTTGGGCGTTGATTTTTGC
TTCCATTCTCTCATATACTTTGCAAGAAGGTAAAGAATTTGAGCACAGAC
AGAAATGATGAACGTCGTTTTACAGAAACACATTTTCTTTTCCATCGtct
attctattctatttaGGGTGGAGTTATAACCATGCCAACCCTCTTAGCTT
TCATTACACTCGGAACATTGACAAGTTACTTGTTAACTTTGCTAACTTAT
CTGTACGTAATATCATTATCCACCATTAGGTACAGCAAGACTGACAATAA
AAAGTGGTAAAAGCCTTGGTCAATGTCTTCAAGCAAAATATAAACATGGT
CGACTGATATGGGGCGTGGGCGTTATTTGCTGGGTGGTGGCGGTCTGTGT
ATTTCTTGGTAAGTTGCCTCAAAAAATGTTTAGCNCTAAAAATAATACTG
CGGCGGAGAAGTACTTATGAAGTGGCGATTGAAATAtggaaaacaataaa
aatagaaGCAATCCTACAGAGGGTCAACAGCTTTTACAGACTGAAAACTG
CAACAGAGGGGAGAGTCATACACGCAGCAAAATGAGGAATAGCAAGATTT
TCAAAGAGATTGTGAGCCTTCTATACTGGACCATGTTGGCGGCTTGTACA
GTGGGGCCCGGAACCGTAGTCACTTGCGCAAGGGCCGGTGCTGAATTTGA
TTTGAACTTGATTTGGGCGTTGATTTTCGCTTCCATTCTCTCATATACTT
TGCAGGAAGGTAAAGAATTTGAGCATGGACAAAAATGATAAACGTTATTT
AACCTAAACACGTTTCTTTTACATCATCTATTCTATTCAATTTAGGGTGG
AGTAATAACCATGCCAACCTCTTAGCTTTCGTTACACTCGGAACATTGAC
AAGTTACTTGTTAACTTTGCTAACTTTTATCTGTACGTAATATCATTATC
CACCTTTAGGTACAGCAAGACTGACAATAAAAAGTGGTAAAAGCCTTGGT
CAATGTCTTCAAGCAAAATATAAACATGGTCGACTGATATGGGGCGTGGG
CGTTATTTGCTGGGTGGTGGCGGTCTGTGTATTTCTTGGTAAGTTGCCTC
AAAAAATGTTTAGCCACCTCGGTTTAAAGCtcattcgattgacaaaaagG
CAAAAAGTCATTGCACTATTTCAATTATttatttcaattcatttttcTCC
AGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCCTGTCTAAAAGC
TGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTTTTATTCATGCA
ACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTACCCGGTGCTGGA
AATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTATGGTTTCATTGT
CATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGGAGTAGGACTTG
GTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAGTTGTCGTTAAA
CTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGAAGAGATTATAA
TTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAACTATTATTCTT
TGCCAAATCATGACTCATAGATTAATTATGTATGTGCAGTAAACAATAAC
CTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCAAATCTTATTAC
TTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTACATTACATGAAA
ACATGGTTCTTAATTTTgatgacaaaaattctttctATACCACATTATAN
AAGGCAAAAAGTCATTGCACTATTTCAATTATttatttcaattcattttt
cTCCAGTTCCCGATTTGTTCTGTTCTTGTTCAATTCCTCAGCCTGTCTAA
AAGCTGCTGATTTTCTTTTCCTTCATACTATAGGAAACACTTTTTATTCA
TGCAACAACTGGGCAGGTGGCATGTCCGCCATCTACGCACTACCCGGTGC
TGGAAATACGGTCGGACTACGTGTTGGTGCTTGTTTTGGGTATGGTTTCA
TTGTCATCGCAATTTCATTGGCTGATAAAACGGATTCACTTGGAGTAGGA
CTTGGTGTAGTTATGATTGCCATGGTGATATTATTCCTGGTAGTTGTCGT
TAAACTAGGTAAATTTTATTATCTCATGTTACAAGCCTTGAGAAGAGATT
ATAATTCAAAACAGCTAATTGGAAGACACTTTTTGTCCTTTAACTATTAT
TCTTTGCCAAATCATGACTCATAGATTAATTATGTATGTGCAGTAAACAA
TAACCTTCTAGCAAGTTAAACCTTGATGCTTGTTTCCCCTCCAAATCTTA
TTACTTGCTAACACACTTTCCGTGGTGAAGCATAAACAATTACATTACAT
GAAAACATGGTTCTTAATTTTgatgacaaaaattctttctATACCACATT
ATATCATTTCCATAGGTTTAGATGGTGCACGATTCGCTAAAGGATTGCTG
CCGATCAGTATGCCAGCAGGATCCACCAACATTGTTTTAAGCTTGGTAGG
AACAACTGCTATCGGCTTCAACCTATTCTTAGGTGGACAGATGGCAGAAG
GGAAAACGCTTCCACAAGCACAAAGAGGGATTGCATTTTCAACAGTAATG
ACTCTGATTGTGTCAGTCTTAATCATGATTGTTGGAGATGGTACAGAGTT
ACAGAAAGGGTTATTCACCATCGCCAACTTGTCTGGTACTGTAGAAAATC
TGACTGGAGGTGCTGGTCTTTGGATATTTTGTCTGGGCTTCATTGCAGCC
GCTTTAAGTTCCATGTTAGTGTGCCCGTTAGGATCAGTGATGACTTGTGA
AAGCGTTTTCAATATTTATGCGGAAAATGACGAGCAGTCGGCAATGGAGT
ATAAGAGCACTGGAGAGAAGGAACAGGATCAAGGTACAAAAGAAGGGGAG
CAAGTTATTCAAATCCAAAGTGAAGGCCAAGAAAGATTGTTTCCCAAGAA
ATATGCACGTGCTTTGATGGTCATAATGGTATCCGTAGCTGTGATTGTGA
ACGCTGCAAATGCACCACCTGTTAAAGTCATCTTGGTCGCTCAAGTAAgg
ctttttcttatttttctaaactAATTTTGACACAAGGCATACGTACTGAT
AGCTTCTAAGATCTTAATAAGGCCATCAGgtgttaaattttgaaaataat
aaaaacctACTTACTTGAAAACGTTCTCCAACAACTGATTTGTGCGTCAA
CCTGAAGTAAGAAATAAGCTGGAAAATTATCTTATCTACACTAAGCAACT
GAAGTTTATATAATGTTCATGGATTTTTTCATTAATTGAAGTACCTTTGA
ATCTAATTTAGGTGTTCAATGGTTGTCTTCTCCCCTTCTTTTCTATCTGT
CTATTGATCTGTTTGAACGATCCACAATTTATGGCATCTGCTCCACAAAA
AGGATGGTCCAATTGCTTCCTCACTACTGCTGTCATTATAACTTTGTTCC
TGACCGCAAATTCCATGATTCAAAACCTCTTCGGATGGACTACAACTAAT
GGTCATATCTTGAAATCCACATTTGACACCatcaaatttagtttttctgg
AGTGATTGCGGTGGCGATTAtgctttgtttgtttttgtgtacTAGTCTAG
GAAAGAATGTTTGCAAAAGTTTAAATTGCTTTAATCGTGTAGAAGACCTA
AGAACATAAAAGATGATGATGGTGAATTTTATTAGTAACACTATAGAACC
CCCTCTAATATATCTATACATGACAAAAGAAATACAAATTATCCTCGACT
CTGGTAGTCATTAAAACCTACAATGGCGCAAAGAGCGACAAATACCACGA
GCGAAAAACCCACGTGTCCGGAAAAAGTAGAACAGATTTTATTTAAAGTA
TAATCATCAGAACTCATTATTTTACTTGAATTCAGAACAATTGAACTAAT
GGTATGGAATTTCTTTGTCGAATCGATAAATACTAAAagtatttttgttt
acttaaatTTTGTTCCAATATTTCCCCTAACCCTATAGACACACAAAGAT
agaattttaagaaagaaatccttaatttttaaaattgcattttcgatttt
catttttaagctCAATGGCCTATACTTTAGACGTAAACAATAAGAGTCAT
AGGAAAAATATCTAGCTCATTCATAAATTCTCTagataaatacaaaaata
tacaaaaaacaaatataaacctTCCTTTTTGATGACCATCCCACCCTTTT
TTCGGGAAATGTACGTACCCTAGTAAAACATTTTTCAGCGCTGGCATTTA
GTTAAATTTTCAGTGAAATAAGTCTTTTGAGAGTCTTTTAATGGCCAATA
NcaaatttagtttttctggAGTGATTGCGGTGGCGATTAtgctttgtttg
tttttgtgtacTAGTCTAGGAAAGAATGTTTGCAAAAGTTTAAATTGCTT
TAATCGTGTAGAAGACCTAAGAACATAAAAGATGATGATGGTGAATTTTA
TTAGTAACACTATAGAACCCCCTTTAATGTATCTATACATGACAAAAGAA
ATACAAATTATCCTCGACTCTGGTAGTCATTAAAACCTACAATGGCGCGA
AGAGCGACAAATACCACGAGCGAAAAACCCACGTGTCCGGAAAAAGTAGA
ACAGATTTTATTTAAAGTATAATCATCAGAACTCATTATTTTACTTGAAT
TCAGAACAATTGAACTAATGGTATGGAATTTCTTTGTCGAATCGATAAAT
ACTAAAagtatttttgtttacttaaatTTTGTTCCAATATTTCCCCTAAC
CCTATAGACACACAAAGATagaattttaagaaagaaatccttaattttta
aaattgcattttcgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007328XLOC_007328Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013094-exon-sc0000162-1491911889:265619..266047TCONS_00013094-exon-sc0000162-1491911889:265619..266047Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1510915933:265619..266047TCONS_00013094-exon-sc0000162-1510915933:265619..266047Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1575043694:265619..266047TCONS_00013094-exon-sc0000162-1575043694:265619..266047Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1491911889:266928..267056TCONS_00013094-exon-sc0000162-1491911889:266928..267056Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1510915933:266928..267056TCONS_00013094-exon-sc0000162-1510915933:266928..267056Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1575043694:266928..267056TCONS_00013094-exon-sc0000162-1575043694:266928..267056Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1491911889:267248..267472TCONS_00013094-exon-sc0000162-1491911889:267248..267472Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1510915933:267248..267472TCONS_00013094-exon-sc0000162-1510915933:267248..267472Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1575043694:267248..267472TCONS_00013094-exon-sc0000162-1575043694:267248..267472Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1491911889:268434..269062TCONS_00013094-exon-sc0000162-1491911889:268434..269062Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1510915933:268434..269062TCONS_00013094-exon-sc0000162-1510915933:268434..269062Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1575043694:268434..269062TCONS_00013094-exon-sc0000162-1575043694:268434..269062Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1491911889:269330..270834TCONS_00013094-exon-sc0000162-1491911889:269330..270834Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1510915933:269330..270834TCONS_00013094-exon-sc0000162-1510915933:269330..270834Clytia hemisphaericaexon
TCONS_00013094-exon-sc0000162-1575043694:269330..270834TCONS_00013094-exon-sc0000162-1575043694:269330..270834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:265619..270834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.384835	5.79461e-05	0	0	0	0	5.60836e-07	1.05033	0	0	0	0	0	0.0712689	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top