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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013090 ID=TCONS_00013090|Name=TCONS_00013090|organism=Clytia hemisphaerica|type=transcript|length=901bp
AAGTGAAACAGTTTTCCAGAGAGTGTGAGTGGAAGGGAAACACGAGGGAA
TCACCTTAAATACCATTTGTATCTATTCCAAAGATACTTGGAAAAGTAGA
ACGTTGTTCCAAAAGCAATATACTATTTCGGAATCACTCAATCATTTAAT
CTATCGATTGACGTCAGCCCCATTTAGCAGTTTTCTAAAAATATACTTGG
TAACCCTTGGTAACCCTTGGATATTTTTGTCTTGGTATGAGAAGGTCTAA
ATGGTAAAGGCGGGAATTCGAAATGATTTGACGttttaaagtgaaaaata
tttgacgtcaatttgaaaatttcaaaaaagttgttcagaaaAATAATTGC
TTTTCATTCCATCTTTGCCATGTTGTGTAATGTTCGCCGCTGCAGCTTTC
GACGCTTTTCGTGACCAAGTCGACAAATTAATCCATACAAATAAGATGGC
TGACATACCCAATgcagaaattttaaaaactatacaagaacTTCAAAAAG
AAGCGGCCAAGTTCAAAGAAGCTTACCAAGATGAACTGAAGGAAAAAGAG
GCGATGGCACAGAGACTGGCAGAGTTGGAGAGCTCCAACGAAAAGAAAAT
CACTAAGATCAAATTATTGggtgaaaaacaaaagaaactttTATCATTGG
TCGAAACGTTGAGAAGCAACAACACGAGACCGTCATGTCAAATCGTGACA
AGTCAACGTCGTACGGCACGAACCACGGCGATTGACGACATGAAGGAAAT
CTTAAAACAAACCATCATAGATACTGATCCGCAACAGTTTCCGACACCGG
CACTGGCACCAGCACCAGCGGTGAATTTCAAATCATCAGCGGTGCGACGT
CAAACGAATGCATGGTGATTTAATTAATTGTcacaattaaaaatattttc
a Run BLAST on NCBI protein sequence of TCONS_00013090-protein >TCONS_00013090-protein ID=TCONS_00013090-protein|Name=TCONS_00013090-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MFAAAAFDAFRDQVDKLIHTNKMADIPNAEILKTIQELQKEAAKFKEAYQ
DELKEKEAMAQRLAELESSNEKKITKIKLLGEKQKKLLSLVETLRSNNTR
PSCQIVTSQRRTARTTAIDDMKEILKQTIIDTDPQQFPTPALAPAPAVNF
KSSAVRRQTNAW Run BLAST on NCBI transcript from alignment at sc0000162:262285..263590+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013090 ID=TCONS_00013090|Name=TCONS_00013090|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at sc0000162:262285..263590+ (Clytia hemisphaerica)
AAGTGAAACAGTTTTCCAGAGAGTGTGAGTGGAAGGGAAACACGAGGGAA
TCACCTTAAATACCATTTGTATCTATTCCAAAGATACTTGGAAAAGTAGA
ACGTTGTTCCAAAAGCAATATACTATTTCGGAATCACTCAATCATTTAAT
CTATCGATTGACGTCAGCCCCATTTAGCAGTTTTCTAAAAATATACTTGG
TAACCCTTGGTAACCCTTGGATATTTTTGTCTTGGTATGAGAAGGTCTAA
ATGGTAAAGGCGGGAATTCGAAATGATTTGACGttttaaagtgaaaaata
tttgacgtcaatttgaaaatttcaaaaaagttgttcagaaaAATAATTGC
TTTTCATTCCATCTTTGCCATGTTGTGTAATGTTCGCCGCTGCAGCTTTC
GACGCTTTTCGTGACCAAGTCGACAAATTAATCCATACAAATAAGATGGC
TGACATACCCAATgcagaaattttaaaaactatacaagaacTTCAAAAAG
AAGCGGCCAAGTTCAAAGAAGCTTACCAAGATGAACTGAAGGTTTGTTCC
TAAACCCGTTTTTATCATAGATTTATGCTCAAGGTTCGTTTTCACCTGGA
GTGTTACTTCAAGTGATCAGTGACCCAAGAGGAATCTTACTCAATGGTCG
ATTTGAGCAGTGCTCGAACTCGCAGCCTTAGAATGAAGATTTAAGCACAT
CAACCGTATAGAGTATTTTTCATCTGGTGTCCCGcaacttttttttcttg
aaatgaTTTTGCAGAAGACAACCAAATACACGAAATCAGCGAGCTCTTAA
TCCAACCAAATTTAAACCCGTTGGTTAATATGTCTGTGATCCCAAGTACT
GTCTTGACAAAATGAGTTATAGAGACGGCAGCGAAAAATAATGATTCGTA
AATTGACTTTCAAGTAACTTCATTTAACTTAACATTTGATTTACAGGAAA
AAGAGGCGATGGCACAGAGACTGGCAGAGTTGGAGAGCTCCAACGAAAAG
AAAATCACTAAGATCAAATTATTGggtgaaaaacaaaagaaactttTATC
ATTGGTCGAAACGTTGAGAAGCAACAACACGAGACCGTCATGTCAAATCG
TGACAAGTCAACGTCGTACGGCACGAACCACGGCGATTGACGACATGAAG
GAAATCTTAAAACAAACCATCATAGATACTGATCCGCAACAGTTTCCGAC
ACCGGCACTGGCACCAGCACCAGCGGTGAATTTCAAATCATCAGCGGTGC
GACGTCAAACGAATGCATGGTGATTTAATTAATTGTcacaattaaaaata
ttttca Coding sequence (CDS) from alignment at sc0000162:262285..263590+ >TCONS_00013090 ID=TCONS_00013090|Name=TCONS_00013090|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000162:262285..263590+ (Clytia hemisphaerica)
ATGTTCGCCGCTGCAGCTTTCGACGCTTTTCGTGACCAAGTCGACAAATT
AATCCATACAAATAAGATGGCTGACATACCCAATgcagaaattttaaaaa
ctatacaagaacTTCAAAAAGAAGCGGCCAAGTTCAAAGAAGCTTACCAA
GATGAACTGAAGGAAAAAGAGGCGATGGCACAGAGACTGGCAGAGTTGGA
GAGCTCCAACGAAAAGAAAATCACTAAGATCAAATTATTGggtgaaaaac
aaaagaaactttTATCATTGGTCGAAACGTTGAGAAGCAACAACACGAGA
CCGTCATGTCAAATCGTGACAAGTCAACGTCGTACGGCACGAACCACGGC
GATTGACGACATGAAGGAAATCTTAAAACAAACCATCATAGATACTGATC
CGCAACAGTTTCCGACACCGGCACTGGCACCAGCACCAGCGGTGAATTTC
AAATCATCAGCGGTGCGACGTCAAACGAATGCATGGTGAATGTTCGCCGC
TGCAGCTTTCGACGCTTTTCGTGACCAAGTCGACAAATTAATCCATACAA
ATAAGATGGCTGACATACCCAATgcagaaattttaaaaactatacaagaa
cTTCAAAAAGAAGCGGCCAAGTTCAAAGAAGCTTACCAAGATGAACTGAA
GGAAAAAGAGGCGATGGCACAGAGACTGGCAGAGTTGGAGAGCTCCAACG
AAAAGAAAATCACTAAGATCAAATTATTGggtgaaaaacaaaagaaactt
tTATCATTGGTCGAAACGTTGAGAAGCAACAACACGAGACCGTCATGTCA
AATCGTGACAAGTCAACGTCGTACGGCACGAACCACGGCGATTGACGACA
TGAAGGAAATCTTAAAACAAACCATCATAGATACTGATCCGCAACAGTTT
CCGACACCGGCACTGGCACCAGCACCAGCGGTGAATTTCAAATCATCAGC
GGTGCGACGTCAAACGAATGCATGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013090-exon-sc0000162-1491911889:262285..262825 | TCONS_00013090-exon-sc0000162-1491911889:262285..262825 | Clytia hemisphaerica | exon |
| TCONS_00013090-exon-sc0000162-1510915933:262285..262825 | TCONS_00013090-exon-sc0000162-1510915933:262285..262825 | Clytia hemisphaerica | exon |
| TCONS_00013090-exon-sc0000162-1575043694:262285..262825 | TCONS_00013090-exon-sc0000162-1575043694:262285..262825 | Clytia hemisphaerica | exon |
| TCONS_00013090-exon-sc0000162-1491911889:263231..263590 | TCONS_00013090-exon-sc0000162-1491911889:263231..263590 | Clytia hemisphaerica | exon |
| TCONS_00013090-exon-sc0000162-1510915933:263231..263590 | TCONS_00013090-exon-sc0000162-1510915933:263231..263590 | Clytia hemisphaerica | exon |
| TCONS_00013090-exon-sc0000162-1575043694:263231..263590 | TCONS_00013090-exon-sc0000162-1575043694:263231..263590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:262285..263590 + |
Blast
The following BLAST results are available for this feature:
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