TCONS_00013074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013074
Unique NameTCONS_00013074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013074 ID=TCONS_00013074|Name=TCONS_00013074|organism=Clytia hemisphaerica|type=transcript|length=326bp
CNCCACAAGAATCTGAAACCTTCTTCAACACACTTAATCCAGAATTTGGA
AAATGCTTTGAATTTACGACGGCAGTATTACCTTTCGACAACTTGCTGAA
GATACGCGTTTACGACAAAGATTATCGCATCACCAAAAGACTGATCGGTC
AAACGGAAATCGACATTGAAAATCGTTACTTCAGTAAACATCGACCCACT
TACGGGCTCGCGAAGCGCTACTTCTCGTCTGGGTTTGCTCAATGGCGAGA
TTCAAGTAAGCCGTCAGAAATTTACGAACAGATCTTCACTCGTGACCATC
ATGGAAAAAAACCAGACGTCAAGTGT
Run BLAST on NCBI

transcript from alignment at sc0000162:98555..99316+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013074 ID=TCONS_00013074|Name=TCONS_00013074|organism=Clytia hemisphaerica|type=transcript|length=762bp|location=Sequence derived from alignment at sc0000162:98555..99316+ (Clytia hemisphaerica)
CNCCACAAGAATCTGAAACCTTCTTCAACACACTTAATCCAGAATTTGGA
AAGTAAGGATTacatcaaaagaaaattctccTTTGCAAAATTGTTTCTTT
TCTCAGCATACACTTGACGCTCTCATTTATAGGTGTGCGTTACACACGCT
CATCTTGACGGGTAAATTTGGTTAAAGAGCttacagattttgaaaatttt
cattacgTTATAATGCTTGAGGAAATTCAGAATCGGATGACGAAATCTGT
GCGTCTAAACCAGGCTTTAAAACTTCTGTTAACCTTTTAGATGCTTTGAA
TTTACGACGGCAGTATTACCTTTCGACAACTTGCTGAAGATACGCGTTTA
CGACAAAGATTATCGCATCACCAAAAGACTGATCGGTCAAACGGAAATCG
ACATTGAAAATCGTTACTTCAGTAAACATCGACCCACTTACGGGCTCGCG
AAGCGCTACTTCTCGTAAGTTGAAAAACCTTTGTtatcttttttaaactt
tttggtTCTCACTGGCTTATTTTGTATGTGTATCTAGGTGGAATTTTTAT
TAGTAGAGCTTCGCAATAGCTTGTTCAAATGTGGTGTATAGTGGAAAGGT
TCATTTTTCTTCAATGCTAATCTTTGTCTTTCAACCCGTGACTTTCCTTT
TAACTTTTGCAGGTCTGGGTTTGCTCAATGGCGAGATTCAAGTAAGCCGT
CAGAAATTTACGAACAGATCTTCACTCGTGACCATCATGGAAAAAAACCA
GACGTCAAGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007320XLOC_007320Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013074-exon-sc0000162-1491911889:98555..98606TCONS_00013074-exon-sc0000162-1491911889:98555..98606Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1510915933:98555..98606TCONS_00013074-exon-sc0000162-1510915933:98555..98606Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1575043694:98555..98606TCONS_00013074-exon-sc0000162-1575043694:98555..98606Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1491911889:98845..99018TCONS_00013074-exon-sc0000162-1491911889:98845..99018Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1510915933:98845..99018TCONS_00013074-exon-sc0000162-1510915933:98845..99018Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1575043694:98845..99018TCONS_00013074-exon-sc0000162-1575043694:98845..99018Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1491911889:99217..99316TCONS_00013074-exon-sc0000162-1491911889:99217..99316Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1510915933:99217..99316TCONS_00013074-exon-sc0000162-1510915933:99217..99316Clytia hemisphaericaexon
TCONS_00013074-exon-sc0000162-1575043694:99217..99316TCONS_00013074-exon-sc0000162-1575043694:99217..99316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:98555..99316 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.411686	0.392645	1.27814	0.758331	3.10854	1.53666	17.2503	15.3896	11.1453	9.47003	30.7766	9.97278	1.5079	0.197397	1.70377	1.72532	1.97311	2.81026	1.29997	2.78978	0	0.870517	0	0.884274	0.00758234	3.54806	0.679433	0.619764	0	0
Blast
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BLAST of TCONS_00013074 vs. Swiss-Prot (Human)
Match: FR1L6 (Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.287e-19
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 3 
Query:   33 LNPEFGKCFEFTTAVLPFDNLLKIRVYDKDYRITKRLIGQTEIDIENRYFSKHRPTYGLAKRYFSSGFAQWRDSSKPSEIYEQI 284
            LNP FG+ FE   A  P ++LL I +YD D   T  LIG+T+ID+ENR++SKHR   GL  +Y   G+  WRD+SKP+EI  ++
Sbjct: 1401 LNPVFGRSFEIQ-ATFPKESLLSILIYDHDMIGTDDLIGETKIDLENRFYSKHRAICGLQSQYEIEGYNAWRDTSKPTEILTKL 1483
The following BLAST results are available for this feature:
BLAST of TCONS_00013074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FR1L61.287e-1948.81Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=... [more]
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