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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013066 ID=TCONS_00013066|Name=TCONS_00013066|organism=Clytia hemisphaerica|type=transcript|length=1628bp
AATCAAACGATCGACTTGAAGTCTCCCAAAAATCTGAAGGTGAAGACATC
aacatttttggtcatttttgaagATTAAGTTGTGACAGGCATTGGATCCT
AGATGTTGACTTAACTTATCTATGATGGACGCTTTAGCAGTTGTCAGGCA
TCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGGCAACCATTGTGAAGG
ATCAAGGATGTCTACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAAAGC
GATGTCGTtcttcttgttttgaaaACGTTACAATTATTGGCAGAGCATGC
ACCGAACCGAAAGATCATGCAGAATGAAGTTGGAATGCTTGAATCACTAA
AGAAAGTCAAAGAAGACGAAAGGTTTCAAGGAGTTCCAGACATCAAGACG
AGAGCCAACCGACTGGTCAACCTTTTAACGAAATCAACTCGACAAACTGC
TTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTCTTCG
TTGgaacacaaaacaaaaaagccAAATTGATTGTGCTTCAAATCACTGGC
CTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTTCCgt
gaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAAGAAACGATGCATGG
TTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGTCAAC
GAATCCAAAATATTGAACGCTGAACAAATCGCAAAAAATAAATCTGGCGA
AGAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTGAAGAGC
GAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAGAAGACCCTGTGGAA
ACCTCCAAAACTGCGCTGGCGAAAACTGGTGACAAAGACAAGAATGGTTC
AGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTTATTAGTAACAGTTTAT
ATTGGTAGAGTGGGGCCACCACATCATTTCGTAtttgaatataattattt
tcaaaaaagacaagCACATCTTTACCGTTCTTCGAAAAAATGGTTATAAA
ACTGATACGCTATTCATCACGCCACAGCACAAAAGGATTTCGAAATGCTG
TGGAAatttaaaatgtgaaaatcgAAGTGACGTATTTATCACCAGGCTTA
TCTTTGAGAGTAGTATATTtagtaaaaaaattctttttatttttaaaaat
aaggaaGAGACAGTTACTTTAAAATATATTAGTTTTTTATTCTGATATTA
TCCGCGCTAGTTTTTATTTCCGTCGTGAAAAGAGGTGGCCTAAGAATGTT
GAAACATTTCTTTCtgaattcgttttcttcttTTGGGAGAGCTGTGAAAA
CCAATTTTATAGGTTTCTTTGACTTTATGAttattctcaaaatttatttt
tggatGTGTAATTTAgacttttgatcaaattttaggTTGAGAGACTCCAA
CTGTATTGTACTGTATTCAGTTGGATAAAAGCGAAGCAAACAGGTTTTGT
TTGAGAccaattttatttaaatattttcagttataatcatTGTAAGATAT
GAATGTATTATCGCGCATAATTCTAgtagtttttaaaagaaaaccaaaaa
attgATATTAATTTGTACCGAAAATTAC Run BLAST on NCBI protein sequence of TCONS_00013066-protein >TCONS_00013066-protein ID=TCONS_00013066-protein|Name=TCONS_00013066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
MMDALAVVRHLHSLAEKPENRATIVKDQGCLPGLVLFLDNKESDVVLLVL
KTLQLLAEHAPNRKIMQNEVGMLESLKKVKEDERFQGVPDIKTRANRLVN
LLTKSTRQTASSARVHTVAPTSQKFFVGTQNKKAKLIVLQITGLGDEESK
RVCEKCLLSVKGVVSFTFNMPKKRCMVRVTQVVSAEMLCNAVNESKILNA
EQIAKNKSGEEVVISFGKNPSVPSEEREEVDFPDYLPEEDPVETSKTALA
KTGDKDKNGSGSGWLSGVSSFISNSLYW Run BLAST on NCBI transcript from alignment at sc0000162:23651..33240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013066 ID=TCONS_00013066|Name=TCONS_00013066|organism=Clytia hemisphaerica|type=transcript|length=9590bp|location=Sequence derived from alignment at sc0000162:23651..33240+ (Clytia hemisphaerica)
AATCAAACGATCGACTTGAAGTCTCCCAAAAATCTGAAGGTGAAGACATC
aacatttttggtcatttttgaagATTAAGTTGTGACAGGCATTGGATCCT
AGATGTTGACTTAACTTATCTATGATGGACGCTTTAGCAGTTGTCAGGCA
TCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGTCAACCATTGTGAAGG
TNCATCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGGCAACCATTGTG
AAGGTTAGAGTgttgtttttttagatttcagAAATTTGCCTTTACTGCCA
CAATAATTAGTCAAGTTGctgatatttatttttttagtaaTTTGCCTCAA
CATCTTGGCCTAAGGTCAGAAAATTTGTAATGTCTTCCTCCTTtaccggg
tgtctctgaaaaaacttccccctCCAGCCAGCCAGGCACATCcaggcaaa
tgaacggggtgagcatttgcatggggtattcgtcacccagtgtaaatgag
ataggacgtctcaggctaaaagcatgaaaatgaatgaaaatgaacttcaa
actgaaaatgggaaaaaaggaagaaaactgggaactttatttttttgtta
aaagtttcttcaatctttgaagaaaaaattgacccatggaaaaaaatttc
atctatgcagttcttcaaaatgaagcaaaatatttcaaacccggttcaat
tgcgtggggtattcagcactattacatcacttttgttttcgatcccttgc
atttgccaccaatcacaagtgaaaaataccccgttcatttgcaaggatgt
gcctgactgccctcctgtttgattcaaaattgcgaaaaagtgaaaaaata
tattagcctgattttttcgaaatcgtttagaggagggtttaacttaaatt
ttggtatatcaaactttaaaattgcttcattagaccaaaagttatgacaa
aaaagagtaaaaaatcttttttcaaaaagagcgaaaaaagacgaaaaaca
gggtatcaaattttttgttagaaaaaaagacactcAAACTTTCTCTTCTC
CACTCAAATAGACTCGCTAAGCTTTggaaacttttggaaaaattttgata
aacctagacgatgtagcaaacatagtaagtataagcacactgtgctttta
attggctgaaatttttttttgcgtcggaaaaactttttcaaactttcagc
aatgattgaccaaattgttacaatgaaaattatccagcgcactttttatc
ttcttaccttgtTCCTTTTCAATGAGGCACTCTAAGTTTACTGAAGGTCA
GCACATAAGATAGTCTTATAATTAATTGAAACACGCTTCCTTGTGCGCTG
CAGTGTAGTGCATGACATAACTCGTGCGGCAACTAACTccccttctgttg
gaagatcatattgggcgttttggcgttaccacccttgAAGCAGCGGGCGC
CTTTGTTTTTCctcaactctttccaccattttagatggccttaacaatag
atccaaaagagcgccataatcttggaagataatttgttttggtctccggc
tttgggaatagcaatgtttttggttgttttcgatggaaaatgataagaaa
cttaagtttaaatataaaaaatataataaatataaaaactagatggTAAG
GTTGATTATAAAAAAGAATAGTCGTTTCTTTAGACCATTACGTTACatat
aaaagaaaattgaaatggtttgtttttttcttcattatatatttaagttt
cCATTATTAAATGCTAATTTGtagaccatattagaaaatttttacatatt
tcgcaaaataaacacttacaaaaagattacttactatttttacccCTGCT
TTTTAAACAGCATCTTCTGTGGGCGTAATATCAGGCAGAGACAAAACGCC
CTCACCGTAAGATTCTTGGGTCGTCTTATTGTTTGTTCCGTTTGTCAAGT
CTGTTGGTCCTATTGTTTATGCTAAATCAGCAACTAGGAGGTTGGTCGAC
TAAATCAGCAACTAGgagattggtcgaaacatgagactgttgcatatctg
gtctgtattttcagttactgtaaaatcgaaagataaatcctgtatttttt
aatacgctgttcattaactcaaatcaaatgactttgggggtttggtgaaa
tggtggccgaattgctgtcccatgttttgtcagatagtcccaagttagag
cagttggtgaatgacgtcaatgtttggcggcataccaggaaaataaaaac
aaaaagattattatttttgcatgaattacgCTACCTTATATGTTAtcata
aaattatacaaaacgaaaGCAAGTCTAGGCCGCCTGCCGCCTAGAGAGCG
CAagccctaatattttttctcttatGGCCAtcaggggaaaacgaaagtga
tcgatattcttcaaCAGAAGAACTTACCAAAAAAACACTAGACAAAAAGA
TGTCTTTCGAGGTGAGGAATGGAtcctgcgaagatgaaaaaattttgact
aggcgtttttcgaggcaaaaatcagcaaaaagctggtgtttttgTAAATC
TGAGAATCCTCTAAGATCCTCACTGGTTAGTAGGCCCACTTTGCctagtt
tatttttgttttcaacttgTTTCTGTCAGAATGCAGCAGACTAGCAAAAT
caagtcatatgtaaacaaattacAACGGGGGTTCTGTTTTCTCCTTCTAG
CTGTGTTTCAGCATTGATGCAAGATCTTTTTACATATCATTTCAAACTTT
TGAGCAatgataaattgaaaaaatcacttttaaagatCCGAAAACCTTTC
CCTGAatataattttacatttttcaaacaactctgacatctttgccctta
tagCAAATTTCTGCTGACTCGACATttcatcattaaaaaaattgctgttt
tcagCAATAGTTgccaaaaataacaataattgccgttttatcttaaacac
ccaactgtcATGATGGGTCATTTCCAGAAAAGATCTTGTGCGTCCAAAGA
AAGTATTCTACATTGTTTGTGGGTCCGAAAGAGATCTTGTTGGGTGGTCT
TTTGTGGGTCAAGTAAAAATCCTGTTTGTGGTTTGTGGGCCTGCAAAAAT
CTTGTGCTTTTTTGTGGGAAAAGTGCTGAAAGAACTGAGTAGAAAATAGG
TTACAAGCATCCCCTAATTTAGTCTTGTTGTTGGTCATAACAGTTTCTGA
ACAAAAGTTAAGATGCATGAACAGAATGACATAGTATATCATATTAATCA
CCTGCGAAAAAAGAGTGAGACAAGTTTTATGATGATAAAAAGGGCATAGA
AATTGTCTATGCAGCAATTGACAGCTGCAGTTGAAAACTTACAAACAGTA
CAGAAATTGCAAGTTTTGAAAACAAGCGTTTTGTTTCACTGCTTTGAAAC
CTTTAATGCATGATATAAATAACACGAACCTGAATTATTTATGATTATTG
AATGATGATGGACAGACCATAATTATGTactcaaaaaaaacaaaaaaaac
aatgttaTGGGCAAGCAACCCCCTTCAgctagaaaatgaaaacttactAA
TCTTCAACATGATTTTTCATTTCCACATGATAAGTTCAGCAAAAAAGGAA
GTTAAAGTTGATAGATGACATAACAATATTTCTTGTTTGTACGccttttt
ttcaattaataAATTTCAGAGAAAGTTTCTCTTGTATGCACAATGCTTAC
AACTAGCCAATAATGTGTAAAACCAAAAGAACaaacaaatttccaaaaga
acAGTGTTTTGCTGCCAAACATTGACACATTAACACAAGGTCTAAAACAA
GAATTTCTTNATGTTTGTacgcttttttttcaattaagaAATTTCAGAGA
AAGTTTGTCTTGTATGCACAAAGCTTACAACTAGCCAATAATGTGTAAGA
CCAAAAGaacaaacaagttttgctgCCAAACATTAACACATTAACACTAG
GCCTAAAAcaagaatttctttttggacacagaggtcctttaaattaactg
atgtctgttcgtccgtccgtccgtctgctACCAGCTTTTTCGGggttggc
tcattagttttttctgattttttgtcagtgatgcaaaatggtgatttcCA
AAAGGTGACTGAGCGCGATATTCGAAAAGAAGAATTTTGGGGCAAAAAGT
GCCCAAAAATGGgttattttggactttgtgaaattgcttcattagatttt
ttgcataaagatagagggcaaggttctctaaagaGTGGCTCAAGCagttt
tttccggaaaattcccttttgtcattttcagggaaaaatgagcatttctc
gcgattggcttggtattCTTTCTGACTTTTTAGTCTGCATATTTTTACGA
TTGTTGccatttttttattacattagccttcaggtaggtccattcagcat
gtagcttgttattattatttttttttttaagaagaaaatgtcacggtgga
gggcgATGGTTTGACTTTTCTAGAGACTTATtaattaagctgtgcatttt
tctggtagtggattatttttataaaagaagtgtgtaaataaagaactttt
catttctttttccaAAGTCTTTTACAATTAGTTTTGATTGTTTCTCCCTT
TGTGCTTTCATTATAATTTCCAAATTATCAGAAATGTTTAATTTcattat
caggtaggtccataaaagtatagcttgttgtttgtttttttaaagttttc
actTTCAAGGGCATGGTCATAAAACTTAGGTCACAATGTGATTAAAACTT
TTAGACAGGCTGgaaaacatcaaaaatggtttgattttgctgaaatttgg
cacacttgaaTCTAGAATCCTCTATTTTTTGGACCTATaaacatggaggt
ataaagaaaaacaggagtttaatttgtcggtaattggtcgctaaagtctt
ttgatttcttttataaaatgtatcaaaaaaattctaagctcgcccgatga
aataagactctctagaactcaagtttgctctgaacattctaactatcagt
attgaagatatTCTTCTTGAAgatagccttctaatatacgagaattaaat
aaaacttagcCCCACAAAACAAGTTTTATGTTCTATTTCGTTAtccgtta
aattttgttttgaaaatatattttcttaagAGCTAGAAAATGGAAagtta
tttataagcacatgcGATTTCAGAatcaatttttagacaaaaagtcgctg
gagaattttggaggaaaatatCAAGCAATTGATTCCACATTGAAGAAAAC
ATTAATTGAAAAATCTTGTcgtttgatgaaggattgccaagttaacaggc
ctttttttagtcctaatattttcttacaccgatgtcagaaacaatggatc
tcgtctcatctaatttcgaAAACTGAAataagccaataagatttcaccaa
ttGACAAAAGAGCttattaaaaatgcacgatacaTGAGATTACGAGCATG
CAAacctcgtaacttttttaatcgtagggtgAGCTTGGTTATAATGACAT
ACTTCttctgtttctttatacctccatactATAAATCAACCCTTGACCTT
TCTtttgttcgtttgttcgttcgtctgttaccagcttttctcaggatttg
cttcttttttttttttgaaattttgaacaaagACAGAGGGTactttttcc
cggaaaatttgtttttgggctgtaaaaatcagattttcttatttgggtaa
ATTCCCTTAGTCATGTTTCATGCAATTGGCTCGGTTGgctctaatttttt
gcacaatgatgtaaaatggtgatgttttaaaaaagattgatGGAGCgtga
ttttcgaaaaagttgaattCTTGGACTGTGTGTGAAACTGCTTAgttatt
ttttcagatttttttgcataaataCAAGATGAAAGGTTGTCTATAAAGTG
GTTGAAACTGTTTtcccggaaaatattttttgttttaaaatcagattttt
gtatctggggaaattcccttttgtaatttttagagaaaatgagcatttcc
cgCAACAGCTtgatattttttctgattttaaatTTGCATTTTCTTGTTgc
cattttttctaaattttcattgcattagccttcaggtaggtccattcagc
acgTAGCTTATTTTAATTAAACTTAGCCTATCAATTTTACAAATAGGCCT
ACGAATTATCAAAATAACACAGAAGTTTGAGCATGTTCGACAGTGATTCA
TTTGCGATGCGTTTAAGATTTGATCAGAGCATAATTTCTCGTAATTTATA
GTAGTCAAATAGATGaataaattgatgtttaaagAGATCAATTGAAACTT
GCGTTGAAAGAAAATACCCTACCATTTATGTGCAGCACCTCAAGTAAAAG
TAGAAAcaacgtttttgcaaataatacTTCTCTCTTTCCATCCATTAGGA
TCAAGGATGTCTACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAAAGCG
ATGTCGTtcttcttgttttgaaagtgagtcGGATAAAAATGTTTCCTTAT
GATTAAAATATCTCTCTCTGTCTCTCTTACGAGTATTACGTTATTTTCTT
GAAGTACATAGTCACACCTTTTGGAGAATCAGGCCCATTGAATGCCTGGT
TGAGTTCGATATTTCTAgaaaagttattcttataaaaagagaaaTATGGT
TTATACTTAAGATTCAAAAGACTTGCTTTGACAAGGCTTGTTCCTTGGAC
ACTATCTTTCTTCTCATTATTCTTATACATTTGAATGGACCTACTGTCTG
GATGTTTTTATCACTAACTAAATATTAAAGTAAGGGTTACGTTCTTACAT
TTTTTACAGACGTTACAATTATTGGCAGAGCATGCACCGAACCGAAAGAT
CATGCAGAATGAAGTTGGAATGCTTGAATCACTAAAGAAAGTCAAAGAAG
ACGAAAGGTAACGAATATCTATCTTTCCTGATGGCGTTGACAAGTGattt
tttaatcttcttaatgatttttaatggttttattCGTTTAAGCTGCAttc
ttttgaatatttatcACCTGGCTTAAGATTTAAACGTAAATATCAAAACC
AACTTCTCAAAATGATGTACTAGAGGAAAgtattttagttttaatttgAA
AGAGTAGCGTGATGTGATCGTTTCTACTATTGGACAGCCAATTATGtgtg
aaattgtatgacttagtcaaatttttaaagCGTTATGTCTTCGCTTGAAC
CCAGGTTTCAAGGAGTTCCAGACATCAAGACGAGAGCCAACCGACTGGTC
AACCTTTTAACGAAATCAACTCGACAAACTGCTTCGTCAGCCCGCGTTCA
CACGGTGGCGCCCACATCTCAAAAGTTCTTCGTTGgaacacaaaacaaaa
aagccAAATTGATTGTGCTTCAAATCACTGGCCTTGGAGACGAAGAGAGC
AAAAGGGTTTGCGAAAAATGTCTTCTTTCCGTATGTATCTAATCATCTGT
ACTATTGTTTATGTTGTGCCgtcataaatattttttgaagacaacatatt
gtattttattttctaacgtTATctcatttcactgaagattggtgCCTGTG
CACCATGAAAttctgagtttgaaacaaagatattgtctcaactctttatt
atatgTTGTGACATAATCGTTACCTGTGTAGCTTGGTCATTTAAAGTCAG
GTTAACGATATTTAAATCGAGGTCTGAATCGCTACTAAAAATATGAGCTT
GCGAAAACATTGCAGTTGCTCAAAcgaatcatcaaaacaaaatgtcGATC
GATTGTTTTACTTGAATGTCTTCTTTCTAAAACTACATAATTCAGACCAt
caatttagaacgccatgacgTTGATAATGTTGAATAAGTATTAAAACGAA
CGGTCTACTTTTTTGATGGTTCAAGTAAATGATttgcattatttttgtaa
gATCAGTATTGACGTGCTTAAAATTATAGACATCTGACCTCAGTGAGTTA
GTTGTAAatgtctttcattttcattttcaggtgaAAGGAGTGGTCAGTTT
TACATTCAACATGCCAAAGAAACGATGCATGGTTCGTGTGACCCAAGTTG
TCAGTGCAGAAATGCTGTGTAATGCTGTCAACGAATCCAAAATATTGAAC
GCTGAACAAATCGCAAAAAATAAATCTGGCGAAGAGGTATGTAACAAAAG
TGAATCTTTCTCAAGACTCAACGTTGATTATAAGCCATCATGAACCGCAA
TCATTGAATCACTCCAGGAATATAGACATCAGTTTCCCTTTAGCCTCCAA
CAAATGGTCTTTACCTTTAGTGAATAAAAGGGGTAGATTCTCTTAGCGTT
GCTAAGAATCGACCTGACTTTATAGACTAGTTGGTACCATCTACATAAAA
AAATGGACGAGTTTTTAGTCGGTTCTTCTTTCTTACAGGTTGTGATCTCG
TTCGGAAAGAATCCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGTCGACTT
TCCTGACTATCTCCCTGAAGAAGACCCTGTGGAAACCTCCAAAACTGTAA
GCACACTACCATTCATTCATTTCCCATGAAAAGGccaaaaatagtgaaaa
ttatTTAGAAGATCAGAACAATCGTTTATCAATAAAATTGTTGTCCactt
cattttttacaaaaacaacaTTAAAAGATCCTCAAATTGAAGCTCGATAT
TGGCCAAAACTGAAGAACAATGCTGTTTTGTCTCTGgcaaaaattcatta
aaaagtcTGTAAGTAAATTGAGGCGTCAAAATAGTTGCATAAAGGcagct
caaaattttctttccgttAGGCGTTCTTTAAGTTGAGTGACTTGTACCCT
ACTGCATGTCTCTCTGTGTTTCAGGCGCTGGCGAAAACTGGTGACAAAGA
CAAGAATGGTTCAGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTTATTA
GTAACAGTTTATATTGGTAGAGTGGGGCCACCACATCATTTCGTAtttga
atataattattttcaaaaaagacaagCACATCTTTACCGTTCTTCGAAAA
AATGGTTATAAAACTGATACGCTATTCATCACGCCACAGCACAAAAGGAT
TTCGAAATGCTGTGGAAatttaaaatgtgaaaatcgAAGTGACGTATTTA
TCACCAGGCTTATCTTTGAGAGTAGTATATTtagtaaaaaaattcttttt
atttttaaaaataaggaaGAGACAGTTACTTTAAAATATATTAGTTTTTT
ATTCTGATATTATCCGCGCTAGTTTTTATTTCCGTCGTGAAAAGAGGTGG
CCTAAGAATGTTGAAACATTTCTTTCtgaattcgttttcttcttTTGGGA
GAGCTGTGAAAACCAATTTTATAGGTTTCTTTGACTTTATGAttattctc
aaaatttatttttggatGTGTAATTTAgacttttgatcaaattttaggTT
GAGAGACTCCAACTGTATTGTACTGTATTCAGTTGGATAAAAGCGAAGCA
AACAGGTTTTGTTTGAGAccaattttatttaaatattttcagttataatc
atTGTAAGATATGAATGTATTATCGCGCATAATTCTAgtagtttttaaaa
gaaaaccaaaaaattgATATTAATTTGTACCGAAAATTAC Coding sequence (CDS) from alignment at sc0000162:23651..33240+ >TCONS_00013066 ID=TCONS_00013066|Name=TCONS_00013066|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at sc0000162:23651..33240+ (Clytia hemisphaerica)
ATGATGGACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAA
ACCAGAAAACAGGGCAACCATTGTGAAGGATCAAGGATGTCTACCTGGTC
TGGTTTTGTTTTTGGACAACAAAGAAAGCGATGTCGTtcttcttgttttg
aaaACGTTACAATTATTGGCAGAGCATGCACCGAACCGAAAGATCATGCA
GAATGAAGTTGGAATGCTTGAATCACTAAAGAAAGTCAAAGAAGACGAAA
GGTTTCAAGGAGTTCCAGACATCAAGACGAGAGCCAACCGACTGGTCAAC
CTTTTAACGAAATCAACTCGACAAACTGCTTCGTCAGCCCGCGTTCACAC
GGTGGCGCCCACATCTCAAAAGTTCTTCGTTGgaacacaaaacaaaaaag
ccAAATTGATTGTGCTTCAAATCACTGGCCTTGGAGACGAAGAGAGCAAA
AGGGTTTGCGAAAAATGTCTTCTTTCCgtgaAAGGAGTGGTCAGTTTTAC
ATTCAACATGCCAAAGAAACGATGCATGGTTCGTGTGACCCAAGTTGTCA
GTGCAGAAATGCTGTGTAATGCTGTCAACGAATCCAAAATATTGAACGCT
GAACAAATCGCAAAAAATAAATCTGGCGAAGAGGTTGTGATCTCGTTCGG
AAAGAATCCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGTCGACTTTCCTG
ACTATCTCCCTGAAGAAGACCCTGTGGAAACCTCCAAAACTGCGCTGGCG
AAAACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGATGGCTAAGCGG
AGTTTCTAGTTTTATTAGTAACAGTTTATATTGGTAGATGATGGACGCTT
TAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAACCAGAAAACAGG
GCAACCATTGTGAAGGATCAAGGATGTCTACCTGGTCTGGTTTTGTTTTT
GGACAACAAAGAAAGCGATGTCGTtcttcttgttttgaaaACGTTACAAT
TATTGGCAGAGCATGCACCGAACCGAAAGATCATGCAGAATGAAGTTGGA
ATGCTTGAATCACTAAAGAAAGTCAAAGAAGACGAAAGGTTTCAAGGAGT
TCCAGACATCAAGACGAGAGCCAACCGACTGGTCAACCTTTTAACGAAAT
CAACTCGACAAACTGCTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACA
TCTCAAAAGTTCTTCGTTGgaacacaaaacaaaaaagccAAATTGATTGT
GCTTCAAATCACTGGCCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAA
AATGTCTTCTTTCCgtgaAAGGAGTGGTCAGTTTTACATTCAACATGCCA
AAGAAACGATGCATGGTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCT
GTGTAATGCTGTCAACGAATCCAAAATATTGAACGCTGAACAAATCGCAA
AAAATAAATCTGGCGAAGAGGTTGTGATCTCGTTCGGAAAGAATCCAAGT
GTTCCAAGTGAAGAGCGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGA
AGAAGACCCTGTGGAAACCTCCAAAACTGCGCTGGCGAAAACTGGTGACA
AAGACAAGAATGGTTCAGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTT
ATTAGTAACAGTTTATATTGGTAGATGATGGACGCTTTAGCAGTTGTCAG
GCATCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGGCAACCATTGTGA
AGGATCAAGGATGTCTACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAA
AGCGATGTCGTtcttcttgttttgaaaACGTTACAATTATTGGCAGAGCA
TGCACCGAACCGAAAGATCATGCAGAATGAAGTTGGAATGCTTGAATCAC
TAAAGAAAGTCAAAGAAGACGAAAGGTTTCAAGGAGTTCCAGACATCAAG
ACGAGAGCCAACCGACTGGTCAACCTTTTAACGAAATCAACTCGACAAAC
TGCTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTCT
TCGTTGgaacacaaaacaaaaaagccAAATTGATTGTGCTTCAAATCACT
GGCCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTTC
CgtgaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAAGAAACGATGCA
TGGTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGTC
AACGAATCCAAAATATTGAACGCTGAACAAATCGCAAAAAATAAATCTGG
CGAAGAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTGAAG
AGCGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAGAAGACCCTGTG
GAAACCTCCAAAACTGCGCTGGCGAAAACTGGTGACAAAGACAAGAATGG
TTCAGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTTATTAGTAACAGTT
TATATTGGTAGATGATGGACGCTTTAGCAGTTGTCAGGCATCTCCACAGT
CTTGCTGAAAAACCAGAAAACAGGGCAACCATTGTGAAGGATCAAGGATG
TCTACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAAAGCGATGTCGTtc
ttcttgttttgaaaACGTTACAATTATTGGCAGAGCATGCACCGAACCGA
AAGATCATGCAGAATGAAGTTGGAATGCTTGAATCACTAAAGAAAGTCAA
AGAAGACGAAAGGTTTCAAGGAGTTCCAGACATCAAGACGAGAGCCAACC
GACTGGTCAACCTTTTAACGAAATCAACTCGACAAACTGCTTCGTCAGCC
CGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTCTTCGTTGgaacaca
aaacaaaaaagccAAATTGATTGTGCTTCAAATCACTGGCCTTGGAGACG
AAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTTCCgtgaAAGGAGTG
GTCAGTTTTACATTCAACATGCCAAAGAAACGATGCATGGTTCGTGTGAC
CCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGTCAACGAATCCAAAA
TATTGAACGCTGAACAAATCGCAAAAAATAAATCTGGCGAAGAGGTTGTG
ATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGT
CGACTTTCCTGACTATCTCCCTGAAGAAGACCCTGTGGAAACCTCCAAAA
CTGCGCTGGCGAAAACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGA
TGGCTAAGCGGAGTTTCTAGTTTTATTAGTAACAGTTTATATTGGTAGAT
GATGGACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAAC
CAGAAAACAGGGCAACCATTGTGAAGGATCAAGGATGTCTACCTGGTCTG
GTTTTGTTTTTGGACAACAAAGAAAGCGATGTCGTtcttcttgttttgaa
aACGTTACAATTATTGGCAGAGCATGCACCGAACCGAAAGATCATGCAGA
ATGAAGTTGGAATGCTTGAATCACTAAAGAAAGTCAAAGAAGACGAAAGG
TTTCAAGGAGTTCCAGACATCAAGACGAGAGCCAACCGACTGGTCAACCT
TTTAACGAAATCAACTCGACAAACTGCTTCGTCAGCCCGCGTTCACACGG
TGGCGCCCACATCTCAAAAGTTCTTCGTTGgaacacaaaacaaaaaagcc
AAATTGATTGTGCTTCAAATCACTGGCCTTGGAGACGAAGAGAGCAAAAG
GGTTTGCGAAAAATGTCTTCTTTCCgtgaAAGGAGTGGTCAGTTTTACAT
TCAACATGCCAAAGAAACGATGCATGGTTCGTGTGACCCAAGTTGTCAGT
GCAGAAATGCTGTGTAATGCTGTCAACGAATCCAAAATATTGAACGCTGA
ACAAATCGCAAAAAATAAATCTGGCGAAGAGGTTGTGATCTCGTTCGGAA
AGAATCCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGTCGACTTTCCTGAC
TATCTCCCTGAAGAAGACCCTGTGGAAACCTCCAAAACTGCGCTGGCGAA
AACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGATGGCTAAGCGGAG
TTTCTAGTTTTATTAGTAACAGTTTATATTGGTAGATGATGGACGCTTTA
GCAGTTGTCAGGCATCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGGC
AACCATTGTGAAGGATCAAGGATGTCTACCTGGTCTGGTTTTGTTTTTGG
ACAACAAAGAAAGCGATGTCGTtcttcttgttttgaaaACGTTACAATTA
TTGGCAGAGCATGCACCGAACCGAAAGATCATGCAGAATGAAGTTGGAAT
GCTTGAATCACTAAAGAAAGTCAAAGAAGACGAAAGGTTTCAAGGAGTTC
CAGACATCAAGACGAGAGCCAACCGACTGGTCAACCTTTTAACGAAATCA
ACTCGACAAACTGCTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATC
TCAAAAGTTCTTCGTTGgaacacaaaacaaaaaagccAAATTGATTGTGC
TTCAAATCACTGGCCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAA
TGTCTTCTTTCCgtgaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAA
GAAACGATGCATGGTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGT
GTAATGCTGTCAACGAATCCAAAATATTGAACGCTGAACAAATCGCAAAA
AATAAATCTGGCGAAGAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGT
TCCAAGTGAAGAGCGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAG
AAGACCCTGTGGAAACCTCCAAAACTGCGCTGGCGAAAACTGGTGACAAA
GACAAGAATGGTTCAGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTTAT
TAGTAACAGTTTATATTGGTAGATGATGGACGCTTTAGCAGTTGTCAGGC
ATCTCCACAGTCTTGCTGAAAAACCAGAAAACAGGGCAACCATTGTGAAG
GATCAAGGATGTCTACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAAAG
CGATGTCGTtcttcttgttttgaaaACGTTACAATTATTGGCAGAGCATG
CACCGAACCGAAAGATCATGCAGAATGAAGTTGGAATGCTTGAATCACTA
AAGAAAGTCAAAGAAGACGAAAGGTTTCAAGGAGTTCCAGACATCAAGAC
GAGAGCCAACCGACTGGTCAACCTTTTAACGAAATCAACTCGACAAACTG
CTTCGTCAGCCCGCGTTCACACGGTGGCGCCCACATCTCAAAAGTTCTTC
GTTGgaacacaaaacaaaaaagccAAATTGATTGTGCTTCAAATCACTGG
CCTTGGAGACGAAGAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTTCCg
tgaAAGGAGTGGTCAGTTTTACATTCAACATGCCAAAGAAACGATGCATG
GTTCGTGTGACCCAAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGTCAA
CGAATCCAAAATATTGAACGCTGAACAAATCGCAAAAAATAAATCTGGCG
AAGAGGTTGTGATCTCGTTCGGAAAGAATCCAAGTGTTCCAAGTGAAGAG
CGAGAAGAAGTCGACTTTCCTGACTATCTCCCTGAAGAAGACCCTGTGGA
AACCTCCAAAACTGCGCTGGCGAAAACTGGTGACAAAGACAAGAATGGTT
CAGGCTCTGGATGGCTAAGCGGAGTTTCTAGTTTTATTAGTAACAGTTTA
TATTGGTAGATGATGGACGCTTTAGCAGTTGTCAGGCATCTCCACAGTCT
TGCTGAAAAACCAGAAAACAGGGCAACCATTGTGAAGGATCAAGGATGTC
TACCTGGTCTGGTTTTGTTTTTGGACAACAAAGAAAGCGATGTCGTtctt
cttgttttgaaaACGTTACAATTATTGGCAGAGCATGCACCGAACCGAAA
GATCATGCAGAATGAAGTTGGAATGCTTGAATCACTAAAGAAAGTCAAAG
AAGACGAAAGGTTTCAAGGAGTTCCAGACATCAAGACGAGAGCCAACCGA
CTGGTCAACCTTTTAACGAAATCAACTCGACAAACTGCTTCGTCAGCCCG
CGTTCACACGGTGGCGCCCACATCTCAAAAGTTCTTCGTTGgaacacaaa
acaaaaaagccAAATTGATTGTGCTTCAAATCACTGGCCTTGGAGACGAA
GAGAGCAAAAGGGTTTGCGAAAAATGTCTTCTTTCCgtgaAAGGAGTGGT
CAGTTTTACATTCAACATGCCAAAGAAACGATGCATGGTTCGTGTGACCC
AAGTTGTCAGTGCAGAAATGCTGTGTAATGCTGTCAACGAATCCAAAATA
TTGAACGCTGAACAAATCGCAAAAAATAAATCTGGCGAAGAGGTTGTGAT
CTCGTTCGGAAAGAATCCAAGTGTTCCAAGTGAAGAGCGAGAAGAAGTCG
ACTTTCCTGACTATCTCCCTGAAGAAGACCCTGTGGAAACCTCCAAAACT
GCGCTGGCGAAAACTGGTGACAAAGACAAGAATGGTTCAGGCTCTGGATG
GCTAAGCGGAGTTTCTAGTTTTATTAGTAACAGTTTATATTGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00013066-exon-sc0000162-1491911889:23651..23833 | TCONS_00013066-exon-sc0000162-1491911889:23651..23833 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:23651..23833 | TCONS_00013066-exon-sc0000162-1510915933:23651..23833 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:23651..23833 | TCONS_00013066-exon-sc0000162-1575043694:23651..23833 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:23888..23903 | TCONS_00013066-exon-sc0000162-1491911889:23888..23903 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:23888..23903 | TCONS_00013066-exon-sc0000162-1510915933:23888..23903 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:23888..23903 | TCONS_00013066-exon-sc0000162-1575043694:23888..23903 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:30049..30123 | TCONS_00013066-exon-sc0000162-1491911889:30049..30123 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:30049..30123 | TCONS_00013066-exon-sc0000162-1510915933:30049..30123 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:30049..30123 | TCONS_00013066-exon-sc0000162-1575043694:30049..30123 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:30460..30557 | TCONS_00013066-exon-sc0000162-1491911889:30460..30557 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:30460..30557 | TCONS_00013066-exon-sc0000162-1510915933:30460..30557 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:30460..30557 | TCONS_00013066-exon-sc0000162-1575043694:30460..30557 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:30855..31080 | TCONS_00013066-exon-sc0000162-1491911889:30855..31080 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:30855..31080 | TCONS_00013066-exon-sc0000162-1510915933:30855..31080 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:30855..31080 | TCONS_00013066-exon-sc0000162-1575043694:30855..31080 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:31631..31786 | TCONS_00013066-exon-sc0000162-1491911889:31631..31786 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:31631..31786 | TCONS_00013066-exon-sc0000162-1510915933:31631..31786 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:31631..31786 | TCONS_00013066-exon-sc0000162-1575043694:31631..31786 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:32039..32146 | TCONS_00013066-exon-sc0000162-1491911889:32039..32146 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:32039..32146 | TCONS_00013066-exon-sc0000162-1510915933:32039..32146 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:32039..32146 | TCONS_00013066-exon-sc0000162-1575043694:32039..32146 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1491911889:32475..33240 | TCONS_00013066-exon-sc0000162-1491911889:32475..33240 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1510915933:32475..33240 | TCONS_00013066-exon-sc0000162-1510915933:32475..33240 | Clytia hemisphaerica | exon |
| TCONS_00013066-exon-sc0000162-1575043694:32475..33240 | TCONS_00013066-exon-sc0000162-1575043694:32475..33240 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000162 | supercontig | sc0000162:23651..33240 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0005488 | binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0030001 | metal ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0030001 |
metal ion transport |
| molecular_function |
GO:0005488 |
binding |
| molecular_function |
GO:0046872 |
metal ion binding |
Blast
BLAST of TCONS_00013066 vs. Swiss-Prot (Human)
Match: ARMC1 (Armadillo repeat-containing protein 1 OS=Homo sapiens GN=ARMC1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.296e-52 Identity = 110/277 (39.71%), Postives = 163/277 (58.84%), Query Frame = 2
Query: 128 DALAVVRHLHSLAEKPENRATIVKDQGCLPGLVLFLDNKESDXXXXXXXXXXXXAEHAPNRKIMQNEVGMLESLKKVKEDERFQGVPDIKTRANRLVNLLTKSTRQTASSARVHTVAPTSQKFFVGTQNKKAKLIVLQITGLGDEESKRVCEKCLLSVKGVVSFTFNMPKKRCMVRVTQVVSAEMLCNAVNESKILNAEQIAKNKSGEEVVISFGKNPSVPSEEREEVDFPDYLPE-EDPVETSKTALAKTGDKDKNXXXXXXXXXXXXFISNSLYW 955
DAL+VV L LA P NR IV+DQGCLPGL+LF+D+ VV L L+ LAE NR+ M+ E+GM+ SL+ V + G + K A+ + ++L S S +FF+GT NK+AK +VL I GL D + +CE+ LL +KGV+SFTF M +RC+VR+ + AE L +A+ +K++ A+Q+ K++SGEE+++ F P E + + PDYLPE E P + A+++ G + G+ WLS ++F+S S YW
Sbjct: 13 DALSVVNQLRDLAADPLNRRAIVQDQGCLPGLILFMDHPNPPVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPG--ETKLLASEIYDILQSSNMADGDSFNEMNSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNLCEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGEEMLVPFQ---DTPVEVEQNTELPDYLPEDESPTKEQDKAVSRVGSHPEG--GASWLSTAANFLSRSFYW 282
The following BLAST results are available for this feature:
|
