TCONS_00013061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013061
Unique NameTCONS_00013061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013061 ID=TCONS_00013061|Name=TCONS_00013061|organism=Clytia hemisphaerica|type=transcript|length=870bp
CAAAGCGAagctttttaatattttttctatttttttgctaaaaccTACTA
ATTTCAAGGTGGTCTAAAAAGCAAAGGGACGCTGAGATTAGAAGTCAGAG
TCGCCTTTTTCCTCCTCTTGCCTCTTGGCACCCCCCAAAAATTGTacgct
ggggggggggcactgccCGTAAAAATGTTTCTTCATTCTCTTTGAAAGTT
TCTTTTAACTTTGACAGTTGGGCAGCCGTTTTTAATGAAGGTTGCGATCC
AGGCGAAGGAACTATTGCCAGTAGATCTCTTGAGACAGTGACGCAGTTTG
GACATATATATTTGCAGGCAGTTCGTCTTCCATCCTTGCAGACCGTTATC
ATGTAGGGTGGAAGTCTGGTGCAGATGAAATGTACGCTTCTGTTGCATTT
TGAGCAGGTCAAAACGTCTTGGCTGCATTCGTCAACGCAAGAGGATGAGG
TGCAAAGTGGGTTAGGTGTGTTTCGTGGTCTTTTGGGCATCATATCATAT
TGATGTTGATTTGAGTGTGATGTTCTGTTAATAATGAAAATAAGTAGTTT
TTGGaacaatttttcataaattttcagaattttcagaaattgaccAAATC
CCCTACTATTTTTCGAGGGCATTTCAATGATATTAGTGTTTTTGGGTTAT
AGCAGGTTATAGTGAACTCCCAAAGGTTTTTGGTTGTGACCTCAGTTCTT
TTATCCATGAAAAAATCTGCTAGCCCTTATTTGATTaaccttttcaaaaa
agtttttaaatattctttcgAATgagccaaaaaaaaatcaatctgGAAAT
TGTTGTCACAGGTCCTAAATAAAAGATACTATCTATTTGGTAATAGAATA
TTTCTCTCTCTAAAAGAACT
Run BLAST on NCBI

protein sequence of TCONS_00013061-protein

>TCONS_00013061-protein ID=TCONS_00013061-protein|Name=TCONS_00013061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MPSKNSRGFGQFLKILKIYEKLFQKLLIFIINRTSHSNQHQYDMMPKRPR
NTPNPLCTSSSCVDECSQDVLTCSKCNRSVHFICTRLPPYMITVCKDGRR
TACKYICPNCVTVSRDLLAIVPSPGSQPSLKTAAQLSKLKETFKENEETF
LRAVPPPQRTIFGGCQEARGGKRRL
Run BLAST on NCBI

transcript from alignment at sc0000161:500291..501160

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013061 ID=TCONS_00013061|Name=TCONS_00013061|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0000161:500291..501160 (Clytia hemisphaerica)
AGTTCTTTTAGAGAGAGAAATATTCTATTACCAAATAGATAGTATCTTTT
ATTTAGGACCTGTGACAACAATTTCcagattgatttttttttggctcATT
cgaaagaatatttaaaaacttttttgaaaaggttAATCAAATAAGGGCTA
GCAGATTTTTTCATGGATAAAAGAACTGAGGTCACAACCAAAAACCTTTG
GGAGTTCACTATAACCTGCTATAACCCAAAAACACTAATATCATTGAAAT
GCCCTCGAAAAATAGTAGGGGATTTggtcaatttctgaaaattctgaaaa
tttatgaaaaattgttCCAAAAACTACTTATTTTCATTATTAACAGAACA
TCACACTCAAATCAACATCAATATGATATGATGCCCAAAAGACCACGAAA
CACACCTAACCCACTTTGCACCTCATCCTCTTGCGTTGACGAATGCAGCC
AAGACGTTTTGACCTGCTCAAAATGCAACAGAAGCGTACATTTCATCTGC
ACCAGACTTCCACCCTACATGATAACGGTCTGCAAGGATGGAAGACGAAC
TGCCTGCAAATATATATGTCCAAACTGCGTCACTGTCTCAAGAGATCTAC
TGGCAATAGTTCCTTCGCCTGGATCGCAACCTTCATTAAAAACGGCTGCC
CAACTGTCAAAGTTAAAAGAAACTTTCAAAGAGAATGAAGAAACATTTTT
ACGggcagtgccccccccccagcgtACAATTTTTGGGGGGTGCCAAGAGG
CAAGAGGAGGAAAAAGGCGACTCTGACTTCTAATCTCAGCGTCCCTTTGC
TTTTTAGACCACCTTGAAATTAGTAggttttagcaaaaaaatagaaaaaa
tattaaaaagctTCGCTTTG

Coding sequence (CDS) from alignment at sc0000161:500291..501160

>TCONS_00013061 ID=TCONS_00013061|Name=TCONS_00013061|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at sc0000161:500291..501160 (Clytia hemisphaerica)
ATGCCCTCGAAAAATAGTAGGGGATTTggtcaatttctgaaaattctgaa
aatttatgaaaaattgttCCAAAAACTACTTATTTTCATTATTAACAGAA
CATCACACTCAAATCAACATCAATATGATATGATGCCCAAAAGACCACGA
AACACACCTAACCCACTTTGCACCTCATCCTCTTGCGTTGACGAATGCAG
CCAAGACGTTTTGACCTGCTCAAAATGCAACAGAAGCGTACATTTCATCT
GCACCAGACTTCCACCCTACATGATAACGGTCTGCAAGGATGGAAGACGA
ACTGCCTGCAAATATATATGTCCAAACTGCGTCACTGTCTCAAGAGATCT
ACTGGCAATAGTTCCTTCGCCTGGATCGCAACCTTCATTAAAAACGGCTG
CCCAACTGTCAAAGTTAAAAGAAACTTTCAAAGAGAATGAAGAAACATTT
TTACGggcagtgccccccccccagcgtACAATTTTTGGGGGGTGCCAAGA
GGCAAGAGGAGGAAAAAGGCGACTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007313XLOC_007313Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013061-proteinTCONS_00013061-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013061-exon-sc0000161-1491911889:500291..501160TCONS_00013061-exon-sc0000161-1491911889:500291..501160Clytia hemisphaericaexon
TCONS_00013061-exon-sc0000161-1510915933:500291..501160TCONS_00013061-exon-sc0000161-1510915933:500291..501160Clytia hemisphaericaexon
TCONS_00013061-exon-sc0000161-1575043694:500291..501160TCONS_00013061-exon-sc0000161-1575043694:500291..501160Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:500291..501160 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296845	0.26724	1.05067	0.680927	0.68699	0.300996	0.564569	1.00538	0.639391	0.384588	0.347104	1.53274	0.3273	0.450527	0.6579	0.648723	0.415666	0.41159	0.570374	1.10613	0.942922	1.56598	0.0963872	0.111898	0.34383	0.480532	0.724523	1.12091	0.601343	0.522933
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top