TCONS_00013013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013013
Unique NameTCONS_00013013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013013 ID=TCONS_00013013|Name=TCONS_00013013|organism=Clytia hemisphaerica|type=transcript|length=2688bp
TTTTATTTAACCCTTTCTATTTTGCCTTTAAGgaataaaaatactaaaaa
atactaaaaaacaaTATACAATGCAGTGGTTTCAAGGCGATGTCTCTGAA
GCCATTCAAAAGGCTATTAGTGAACAGAAGATGTTCATTGTCTTTGTTCG
AGATGACAAAGAAGAATCACAGAAAATGGAAGAATTATGCAATTCAGATG
AGgttaagaacatttgtaCAGATGATCTTTGTGTAGCAATTAACATCACG
GTGGATAGTGAAGCAGGTCAACAATTTGGTGCTATCTATCCCATTGCATT
TTTACCATGCACCTTCTTCATTGAGAATGATGGCATCCCTGCTGCAATCT
TCCCTACCATGGAAAAAGACAAATTTGTTGAGAAAACTGAAGAGCTAATG
GCGGTggtaagaaaattgaaaattggtgaATCCCAGAAACCAGCTTCAGA
AGCACAACAGCAAGACTCACCTTCAGAAACCACAAGCAGCGATGCAGTTG
GAAATAAAGAGCCAACAAACTCAACTTCTGCAAGCGAAGAAGAACtcaca
aagaaagaaaaagcagACCTCTTGATCTTAAAAGCAAAAGCTAAAAAAGC
tcagaaagaaaaacaaGAGGCAAGAGAGCGTGAACAAAAACGAAGAGACG
AAGGGCGCGAGCTTAGTCACGCAAGACGTGATCTAGCAGAACGACAAGCC
AAACAACTAGCGGACGATCTCGCTAAGAGGCGGGAGGAAGAACGAGCCGC
GCGGGAACGAGTAAAACAACAGATCAAACAAGACCGTGAAGACAAAGTAG
CGAGATTTGAAGCCGAGAAAAAAGCACGAGAGGagacaaaacaacaaaaa
gttgcaaaaaaagATGCAGAGAAAGAAGCGAAAGCACAAGCTGTAAAGGC
GGCAAGAGACGCGGCAGCTCGTATACAGTTTCGACTACCTGACGGTTCAA
CATCATACAAACAATTTCCTTCTGATGCCAAATTCATTGTTGTTGTCAAT
CACGTAACAAAGGAACTGGCGCCCCACATTCCAATTGTTCGTTTAACAAC
AGTCTACCCAAAACACGAATACACACAAGAAGATCATTCAAAGTCCTTAC
GTGACCTTGGCCTCTCTCCAAACGCGTCCGTTATCGTTTCACACGGTCGC
GCGTCTTCATCTTCATCCTCCTCACTCAATCCAATCTCCATTCTTATGAC
AGTTTTGGCGCCCCTTCTAGCTCTCATCTATTGGTTCTTTTCACTCTTCA
AATCTACACCGACCACCACAACACCTAATGACGCGCCATCTGCTCAACAA
CAAGAACCTTCTTCTATCTCGACAAACGACCATAGGGATGCGTCAGTACG
GAGGCGTAATTTGGGCGGTGGATCTAACATCAGGCGTTTATATGACGACA
AGCCAGATGATGAAGACAACGCCACATGGAATGGAAATTCAACACAACAA
ATGTAGtagaaaagatattcaaattgtCAGTAGTAAGATAAGAtttattt
taattgttttgtttgtttgtctgttaCCAGAAATAGTATGTTTTTGGTTA
ATAATTTATCAAATGGAAAAATTGGTTGAAAACCCAGCGACATCCGAATT
GGCCAGTGTTGGTAAAAGGGAGTTGTTGGTTCCATTGGATGCTGAAAGAT
TGTTAAAGACAATTAATGGTAGTTTGATTTTTAGATACATAGAACACTCT
tccattattttgaaatttgaaggaATTGGGCCgttaaaaatcatgaaata
atCTCTTTGGAGACTTTTTGAAACTTACTACCTACTGTTAATGAATAAAA
TGATATAATGCTACCCAACAAGACATTTTTAACTGAAGATTAAAATGGCG
ACAGAAATTGAGGAACCAATTGAAGCAACCAAGGTCAAAATAAGAATATA
TTAAACTCCTGAAAATTGGACAAAATCGCACGGTTGTCTATACGGTATTA
AGAATTATTCGTTGTGTAATGGTTTATGAAACTTCGAGGTTCGATTTTCT
GCGAATGCAAAACACTCTTTAAACCTATTAAAAACCATTATGAACATTTT
GTATCTTTATCAATAAAATATGCAGTAGATGTTGGTTTCCAAATTTATca
ttatttatattttgaattttacggTATAATTATATTAGCatataatataa
atttttacGTTATATTTTGGAAGTTTTTCTCGCCTTTCGTAAAACAAAAT
GATTATCCAATTATCGCAACAAATATGCGGGGAGCTTCTAAATGATCATA
ATATGTATAGTGTAGAGAAGACTATTATTATGGATCTaacttttttttcc
aaatttcataaTGTGGCTACGTTGCGAGagatttattttgtattttcagg
TAGTTTTCATTTGCAGAACTTAGgttatgtttttaaataaacaaCGTCAA
TTTTCAAGTCTAAGCCTAAACTTGAAAATTAACGCtaaaggttttagttt
tacataACTTTCCCATTAATCTTCCACAAATTTTCTCCCCTTCGCTATTA
TGAATTTGTTGTCGAATTTgctggaaatattttttatatattatgataac
ttgatatctatattgtataaaatttgataaatcaATCACGCAAACTACAA
TGAAAATATAGATTATAAAAGCTATAAATTATGAATCAACGAAACttata
tctttttcatttttatgggCTTCTTGATCCAAAAACgc
Run BLAST on NCBI

transcript from alignment at sc0000161:300762..316151-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013013 ID=TCONS_00013013|Name=TCONS_00013013|organism=Clytia hemisphaerica|type=transcript|length=15390bp|location=Sequence derived from alignment at sc0000161:300762..316151- (Clytia hemisphaerica)
TTTTATTTAACCCTTTCTATTTTGCCTTTAAGGAATAAAAATACTAAAAA
ATACTAAAAAACAATATACAATGCAGTGGTTTCAAGGCGATGTCTCTGAA
GCCATTCAAAAGGCTATTAGTGAACAGAAGATGTTCATTGTCTTTGTTCG
AGGTACGTTTTTTTCTTGCCGATTAAATTTTGTGTAATCAATCTTCTCGG
TGTGGGGTTATCAAATTCTGGTACTTTTAATTTGAGGTTTACAACCAAAA
CATAACCTTTAAAAGTATCAACTTTTATAGTTACATTGGATAAATCTGTT
TTTCAATGCAATGCCCTGTAAAGCAACTATGTTTCTTGTGAAGAAGTAAT
CAACAGAACATTAACAATTTCTTTTCAGATGACAAAGAAGAATCACAGAA
AATGGAAGAATTATGCAATTCAGATGAGGTTCCTTTTTTTTCTATACAAA
AATTTGCATCAAGCTTTTCTCTCCTGAGAGACAAATGAACATGTGATGTG
AATTTTTATTAAATTTCAGTTTAGGGTCTTAAAGTTGCTTTTGATAAAGA
CAGCAGATAACTATTTTATAAATCACTTGCATCTAAAACGTTTAAACCAA
TAGACCACAGGTCATTCAGGCCAATAATACATATATTTCTAACTATCGTC
ACTTCTTTCTAGTATTAAAAGTTTGGTGATATAATTCCCTNCACTTGCAT
CTAAAACGTTTAAACCAATAGACCACAGGTCATTCAGGCCAATAATACAT
ATATTTCTAACTATCGTCACTTCGTACAATTCTTTTCTAATATTAAAAGT
TTGGTGATTCATTTCCCACTATTTTTGTTTTATTTTGTAGGTTAAGAACA
TTTGTACAGATGATCTTTGTGTAGCAATTAACATCACGGTGGATAGTGAA
GCAGGTCAACAATTTGGTGCTATCTGTATCCTTTTCAAAAGCAAAAATTG
ACTCGTTCAAGCTTCACAAGTAGACTTTAGTGTAGCTGTTACCACTTCTT
ACATCAGTAAATATAACCACTTCTGCTGAGGGGAATTCCCTTCAATGGGA
ATAAAGTTTCGTGGTTTAAAATTTTTTTCATATCCCTGAATATTTTCAAT
AAGTGAAAAAAATTGGATTTGCAGCTTTGCCTTTTTTCGATACCTTGGAA
TCTCTTGAAAGACTGAAACTACTGTTAATTTGCATACTTTTGGATCTACC
TGAGGTCCTATAAACCCTGGTATGTTCGTTCGTTCGTCCGTTCGTCCGTT
CTTTCGTTATTAGCTTTTCTCGAGATTGAACCATAGGAATTTTCTGATCT
TTTGTACAGCGATGTTTAATCATAAAATAAACCCTCGAAAATTGTGTGAA
TTTCAGCTAAAAACAATTTCTTTTTTCCATAAATGTAAGATTGTAAGACC
ATCATAGGTAAAAGCTTTTTGCGAAAAAGACTTCTCGGTTAAAAAAATGA
ATCTTTAGCTATAAGAACCATTATTCTTTTAAGCATATTACCTATTTTTT
GACACGTTGTTTTTATGCTTGTTTAAATTGCAATTTTGGGCATAAAAGAT
GCTACGGATCGTAAAGGTTGGCTAACTACCACCTTTATTAGTTTTTTATA
AGCATCTTTCAATAAAATGTCAAGCTTTCTCGAACTTAAATGGTTTTTTC
TAAAGTTTATCATAAATTGAATCTTTTCCAAAGTAAAAAAATATTTAATT
AGTTAAATATTATGTTCTTTAATATACCCTTGCTTTTTCATTTTGTATGT
CAGTGCTTTTACAACTTAATGATTGTCATATCTCATTCAGATAGTCACTA
CTACCTACGAGGGTGTCGGCAAACGGACGAGACCGTACGGGACCCCATCC
CCCTAGTGCCGGACACTGGGGAAAGGGTTTTAGGGTTTTCCGCTTCAAAA
ATTTTCAATTTCATGTTCAATGTTCTGTAGATTAACCAAGTAGGTCCATA
AAAGTCTTGTTTGATTATTCATTCAGAACCATACAGGGACTGATAACATC
AACCATAGACATCATTAAATCTCCATGTGGTTCACTTTACAAGTCATTAG
CTGGCAATTCCAAATCTTCATAGCTAATGGCACGGACTTTATCCTCAAAG
TTCGGTTTGTCTACTTTCAAATATTGCCAATCATAGAGATTGTCGTCATA
CGTTAATAACTCGATGTAATATTTCGCTCCTTTCACCAAATAACGTGTGC
ATGAAAACTCGCTAAATTAAAAGAAAGATTTAGAAACGAATACCTACTTT
AGAGGTTTGTCACATTTTGTTATGTTACGTACTTTCCGCCATTATGAAAG
CAAACGTTCGATTTGTGTAAGGAATCGTCCCTACAGATTCGAACATTTGC
TTCCTTAATGGTGGAAATTACGTAACCTACAAAGACATGAAAAATCCTAT
TATTTGAAGGAAAAAATGGATAAATGGATCATTAAAAAGCACTTCATCCT
GCTTCATCTTCATTGCTTTTGATAGCTCAGGCTAGAGAAGTTATGTGTCT
AACCAAAGCCAATTTTTAGTACTAAATCATCGAAAAATGTGTATAGGCTA
GGCTAGGCTAAGCCTTTATCTTACGCTAAATTATTCGTAATCCTCTTAAT
TTCTTGAGTAATTTTCCAGGCTAGGTGCTTTTAATATGTTCTTAGTTTTG
TCCAAATTTCATGCCTTATTTATTTGTTATGAAGTTTCCTTGAATTTGAT
CGGATGTTTTTTGTTATTTTACTGTATCTCTACGGGTATCTCGTAGTCGG
AGGATTGAAATAAGTGGCGTGGCTGGAATGAGAATCCGGGTGGTGAATTC
TGAAATAAATTTACTGGGTACGCTAGCTAGTTAACCGAAAATGCTTCTGT
TGCAGTGATCAGAATTATACTCAAGACTAATGAGCAGACGAGAGTTAGCC
TACGAGCCTACTATGAAACACATCTTTATATTATATAAACTTGGACTATA
TTTTTATGGTGATCAGTTATATAAACCAAGAATTTCTGAGCTCACAAAAT
TTTATAACAAACTTACTCTTTTAGGCCACTATTCCCAGTGGAGCCTGTAC
AATAATATTTCGACGTTTCTGTCTCATCTTTGCCCATGTAAAGTTTTGCG
AAATCGTTAGCCATCAAGTAGAATTTATATTCGCCTGTGCTTCTAGCTTG
AAAAACGCTTTCCCATCGCATGCCATGTTGATCCCATGTTTTTGTGCGTT
GAAAGAAAACATCCATATAAGTGATTGAGGTTGGGCTGTCTTGTTTGGCT
CTGATAGCATTTTCAAAGTTATTGAAAGACAGTGTGTCCATCGATTGAAA
TATCGATACTTTGATGGGACCTTTATCTAAACGGAGATTTACAAGAAAAT
TTTGATCGAAAGAAAATTTTCTCCGACTTTTTTTTTCAATAAGGTTGATT
CTCTTTTCCAACGCCGTCTGATCAATAAATTAGGGTTAAAAATGGAATGA
AGCAATACTCAAAGAATACCTTCCCATTAAAGTAATGTCTTTAAGAGTAA
GGCTGGACTTTAAAAATTCCAAAAATTTAAAAAGTCCAGCCTAATTAGAG
GAATTATATCTTACCAAAATCGAAGACGATTTGCGCCGCTCTTGCTGTGC
ACGAACTTGTGAGGACCATATCCCATTCAGGAGCAATATTTCCTCCGTAC
GGCCCCACGCAACTGTCCTTTCCCCACTCCAAGAACCCACCTAAAAAAAG
GTCGGTTCTCATTAAATTAAACGTTAAATTACATAAGAAGATATCGAAGA
TATTTCGTGCCTGTTCCTAGATACAATTCTTAGGTTTTTAGCGTCGTAAA
GTAGCTTCCTAATAAAATTCGATTTTAGCGGGAGTTTGAGGCTTAGCTAG
AAATAAACAAGAGCCGCCAAGTTGTGGATAGATACGTATACTATTATTTA
AGTATAACCATGAGCATTAGTAAGAAAGGGAATGAGAGAGAATAATTATG
ATTTCGTTACCAAGAGTAGTTAAGTTAGAGCGATGACCGAATGGTCAAGA
CGTCAGCGTCGCTCCTTCAAACGTTCCGTCTTGTTCATAGATAACTGAAC
CCGAACCGGATGGCCGTGGACCCCGTGGAAACAAACGAAAGACTATCTAA
AAGCTGAAAGTGATAGATTACTAAGCTATCCACGTTAAATATCGACCCAG
AAAAAGTTACGAACTAATCTTCGCTTACGTGGATTTCTACGGAATTTCTT
ACGCTTGTCCAAATCCATAGCACTATAAGGACAATCCTGGATGTCAACAA
GTTGGATGGGACCAGTAGTATCAGATGAAGGGCAGAGTATCTGTCCACTG
CAAACATGCGTAATGACACCTGAAAAATTAACCATGATCATAGTGAATTG
GCCGACCAGTATCTTTGCGTGATTATTAACCCTTTCCGTACCGATGTCGG
CTTATGTCGACAAGAGCATTTCCGATTTCTTTGCCGGTGTCGGCATTTTC
CGACATGAGCGACCACAAAGTTAAGATCACATTTAGCTTAATTTTCTGAA
AATCATTTCAATCTCATCACCCTCTGGTGACGCCACTGTACCTTCATTTT
TTCATGTCGAACCTTAAAAAATATGCACGGCAGTTAAAAGGTTAAAAAGA
ATACACGATTTTCGAATTCAAGTACATTAAACAAAACGAGTGACAAGCGG
AAATTCTCTATATAAAATATTGATAGACCTTCTTATTTCTCATTTGAAAT
CCAAGTGTTCATTCAAATTTAAATGAGATCAAAGCAAAAACTAAAGCAAA
AAAAACTAATTCGAGTCTGGCACATTATTTCACATTGGGCAGATTCTTTT
ACTTTTTTACTTTATTGTGTTTGATTAAACGAGAGAAAATTGACTAGAAT
TGATCTAGCATTGATCTATATTACTTCGAATAAATGAATTCTTTTAAACA
CCCCCTCGAATAAACGCCCCAAAAATATAAAATAAACGCCCGGGGCGTAT
AAAGAAAGTCAATCTATAATTCATGAGAAAAACAAAAAACTTTTATCAAA
TTCGTGTAAATATTCAAACAAAAGCTATGAAAATGTCTTCAATGCCTCAC
CAACAGTCATTATTTCACAGTGTTAATCCTTTGGCGGTGGGGGGGGGGGG
GGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAAAAAAAAGTTCAAGCTATAAAGATTAGAC
TCACCTGCCCAGCTTCGATCGAAATCAAAGTAAGCTGATACACTTGTGCA
CTTTAAGCTTGATATTGGATGCAGTTCAATATTACTTGTAGTGAAATCAC
ATTCGTTGGCTCCTATTGGTGCGTAACAGTACCCGTCCGGATGCTTCAGT
CGAGTTATTGAACTTTTACCTAAAAATACTTTTATACTTTAGGCGTACAT
ACTGTACAAACTTTCGCGAGCAGAAACTTTTACGAGGTCAAAAAATCGCG
TAATTTGCGACATTTACTTTCGCGAATTTAAGAAAAAAACATTTTTCGCG
AGCAGAAAAGTAGTAAGACCTTCAAAGAAGATTTTGACCATATTTCAAAG
AATGTGACTGTTTTGCCATTTTGTTTTTAGAAAAATGCATATGTAGTCCT
CCCAATATTATTTGGGTAATGACTTTTTTACTACCTGATATTGCCACAGT
AGTAGTGTCACAACATACGTATCATCTTTGTTTTGATTAAGTTGAGAGTT
TTATTTCGTGTTTTTCAGGAGAAAAACTAAACTTGGGAAGTTTAGAAACC
GAATGTTCTGTGCTCTACCTGCATGCTACGGCCGTCTATTTTCGAAACCT
CTTTCGAGATAAAATACCTCCTTGAATTTGTCTCGTAAGCGAACCTACCT
GTATCAAGGTGTCTCCATCCAGCTCGAGTCACATATTCATTTTGATCATC
AATATCTTCATCTACAAGTTGACATTTGCTTTTCTCCAAGTCTGTTTCAT
CCTTATAGAAACTCACTGATTTACATTCTGTCTCTGTAACACAACGATCC
ACGCACGCCGCTTCTTCCTGCGTGTAGAACTCTTTATAGTGTGATGTAAC
ATGGACTTTATCTGTATGTCTCAATATGAATTTTGCTAAACGAGTGTCTT
CGAGTCTTAAGATGTTGTGAGCAGAGATTATATCGAGATAGAAAAAGAGT
TGAAAGAGTAAGTCCTTGTATCTCATCATTCTTTTCGTTCATCAAATAAT
TGAAATATTTTCGATGGTCACTTTCGATGGTTATTTCATCTTGTTTCGAC
AATGTTTAGGTATCCCTTTATATATTTTCGTGAATTTATTTACCAATATA
CTCAAAATGATTCGTTTAGCATTTTTCTCATTACCAAGATAATGTTTTCA
TGTATGACTTCTTTTTTTCACCAAGAACTTGCCTAGAAGCTGTCTTACCC
AAATCTGGAATAAAATGAAATGAAATTGAAAAAATGTCTGAAAAAATGTT
TGATTGTATAGAGAGAAATTGCTGTCAGAACATCTTCTTAGAGAGTCTAT
TCAAAAATTGCATCTGCCGGTATTTTGGCGAGAGAATTGAATACGTCCAA
TCTTTTGGGGCCGTCTCATTTGCTTCGCTACCATGTCGATTTAAAAGTTG
AAAGGGAAATGACAAAATTTCACAATATGACACCCATGTTTTTTCCTTCA
TTAAATATTTGGAATATTTTCCATGGTCACAATACCTCCTGTTGTTGTGA
ATTCAATAGTTTTGAACGCTTCATTTGAATCATTTTAATCGAAAGCAACT
CAGCACCCTAGCTATACAATACATGTCGTCTGGAAATTTTGTTTTTCGAA
AATTAGAATATTATGTTATAACATTTAACCTATTTTTACACCCAAACACA
TGATTCGTGAATGACTTGTTTTTGGAAGAATAATTTCAAAATAGATATCA
ATTAGACAGAACATAAGAACACCTTCAGAAATGCTGATTTTTAACCACTG
ACAGATACTTACCCCCTTATGTTTCAACACTTCTTTCTCACAGACCCGTT
TGAACACCTTCCTACTGGAACAATTGGACAAAACTTCGTCCCCAGAGGAA
AATTATATATATTTCAATTTTTGTCCACACTGAAAATGATCAAATAAACA
AATCCTCACTGCGACACATTGCGCTATTTTTTTCATCCCACTGAATTTTT
AACTTGAAAACAGTGGAATTCAAATCCCCAGCCATAAAAAACATGGGTGT
ATCAATCCCCGTCGAGTCAGTTATTTTAACCCCCACTGGCTAAAAGGACT
GCACGTACGGTGTAGAGGTCGGTAACCTCCCCCCCCCTGGGATTTTTTTC
TGATTTTTTCCATAAAAGTAGGTTGTCAGTATAGGTAAAAGATGGCTGAA
GCAGATTTTTGAAAGAAAAAAAATTCTCTGCTCAAAAAATGAATCATCAT
CTATAAAAATCATTTTTTATAAGCATAGGTCGATGTTCCTAATCATTTTA
AGTAAGCGAAATTGCAATTCTGAACAACTTTTTTTAAATGGGTATGTGAT
TTGGGTCTATTAACATTGCTTTCAAGTTAGAAGAATTAGCTTGATCTTTA
TTTATAAGCATATTGCTAATTAATTATTCACAAGCTTTCTTGGTGATTGG
CTCATTCTTATTTTCTAATTTTTTGCTCGATACCTAGCACTTGTTAAAAT
TTCAAGTCTATAGCATTTTCCAATCACTAGATACCTGGGGCTGATATATA
AGCAAAAAGGGCAAATTTTGATCGGTCTGTAAAATATACGATACCAGCAG
ATAGCAATAATATACATGTCACGTGGAGTTGCCTTACAAAATTTGAGCAA
AAAAAAGTTTTAGGGGATGGTCCTACTTTGGCATTTTCAAAGAATGATGA
CGTATCAATTATGCCGAAATTTTCATTAAAGATGCCAANTACAAAATTTG
AGCAAAAGAAATAGAAGTGAAAAAAAGTTTTAGGGGATGGTCCTACTTTG
GCATTTTCAAAGAATGATGACGTATCAATAATGCCGAAATCTTCATTAAA
GATGCCAATTTATATTTGGTGCACATTCATAAAATTTAAGTCAATAGGAT
AAATACATCAAAAGTTTTCTTTATGGGGGCCTCCTTGCACCCCACCCACC
CTCCAAGATGTGTTCAATGTTCTTTAGATTGACCAGGCTGGTCCATAAAA
GTTACCCTTATTAGTTTTAAGAATTCCTTGACACAATTTCAATCAGATCC
CATTGCATTTTTACCATGCACCTTCTTCATTGAGAATGATGGCATCCCTG
CTGCAATCTTCCCTACCATGGAAAAAGACAAATTTGTTGAGAAAACTGAA
GAGCTAATGGCGGTATGTAGCATTTTTTGGGTATAATATAACTAGCCTTC
AATAGCTTTCATTTCAAGTTATTGGAAACTCAGAAGTGTTCCAACTGTTT
CAAGTAATATTCCGCTACTCGGGTCCCCTCTAAAACCACGAGTTCCTCCT
AGGGTGCCTTTTTCTGAAATGTATTGGAAAAAAAGGAGAACTCAAGAAAA
CTTTAGAGTTTCAGTACCATTCAAAATCGAGTCCCACTCAGTACAGTATA
CACTTTTCAAACCTCCGTACCACATTTTTGCCAGTTGCAAGGGTAATATG
AAATTGATTATATCCTCCTCTATGTTTTTTCAAGGTGGTAAGAAAATTGA
AAATTGGTGAATCCCAGAAACCAGCTTCAGAAGCACAACAGCAAGACTCA
CCTTCAGAAACCACAAGCAGCGATGCAGTTGGAAATAAAGTAAGTTTAGT
AAGGAACTCTATAATATTAAAAGAAGCAATTGTAACCAATTAATTTTATA
TTTTGCACCTTTAGGCAAAATAAAGAAATGTCTTGTTTCAGGAAATCGGC
CGGGTGAACTTTTTAAGAGAGTCGCCCGGCCGCAAAAGAAAATATCAAGA
CTATAAGAAAAATCTAAAAATCTAAAAAAGATATTTTTATGCGGCAGGCC
GGATGAGTTTTTTTCGTCACCCACATTTCCGGAATAAAGTTTTTTTTTGG
TCTTACAACACCCCAGTAATTGGACTCTAAATTTTAAGATTCCATCAAGT
AGAGTACGATTGACATCAAACTCTTTCTGAGCCGTAACGAACTTCAAGTT
GCTATATCTCTTCAGATCTCTTCACTGTTTTACTAAGACCATTTCTGTCC
GTTCCTGCTTTGAAAAATAGTTGTTTCTAACCAAATTTTGGGGATTAGGT
TTTTCGTCTGTCTTTGTGTTTTCGAGCTAAATACAAGCGGCTGCGTCCCA
CGAAATATGTTGAGGATCTTGACACTTAAAAAGTATAAGATGCTTTGCTT
TTTCTTTAATATCAATTTATCACCTGATCTTTGTAGGAGCCAACAAACTC
AACTTCTGCAAGCGAAGAAGAACTCACAAAGAAAGAAAAAGCAGACCTCT
TGATCTTAAAAGCAAAAGCTAAAAAAGCTCAGAAAGAAAAACAAGTATAT
CTTATTTCTTCACTTTACAATTCTCCCTTCTCTAACTCTCCACTCTAAAT
GTAAAGGCTATCGCACCCTTGTCCCAAAAAAATTTCAAATTTCAATTTCA
ACGAATGAGGAATCAATAAAGAAGACTTTTAACATTTTCGGAATTCAAAT
ATTATCTCAGCGTGATTGTTTTACTTTAGCCAATCGTCGTGCTCAAAAGG
TCATTTGATATTCATCCCAATGCTAGAAGAAAAAAAGCTCCAAGCGGTTC
ATGGACTTGTGTAAATTCTCGTACAAACCTATGGTCTTTAGAGTGCATAC
GTATCAGTCTAGTAATTAGAATATGCATAGAGTTGAGTCTCTTTATTTAT
GAATGTTATTGATTTTAAAGATCTTTTTCTTTTTACTCTTTTTCATTTAG
GAGGCAAGAGAGCGTGAACAAAAACGAAGAGACGAAGGGCGCGAGCTTAG
TCACGCAAGACGTGATCTAGCAGAACGACAAGCCAAACAACTAGCGGACG
ATCTCGCTAAGAGGCGGGAGGAAGAACGAGCCGCGCGGGAACGAGTAAAA
CAACAGATCAAACAAGACCGTGAAGACAAAGTAGCGAGATTTGAAGCCGA
GAAAAAAGCACGAGAGGAGACAAAACAACAAAAAGTTGCAAAAAAAGATG
CAGAGAAAGAAGCGAAAGCACAAGCTGTAAAGGCGGCAAGAGAGTAAGTC
AATCACTAGGATTCTGATCTAATTAGACTAATTCACTTGAGAGTGGTTGG
GATCGAAAATGGTGAACTCATAAAGTGGAAGGACTTTAATTTCATCCTGT
TCGAGCTGAGAAAGAGTACGAGTCGACAGTTATTTCCGAACGGAAATCAA
TTATTGAATCCTACAGATATTTTGAGACCATTTCAGAAAGTGACTTGATT
CTTTATCATAAATGTTTATAGAGAAATTTTAAGATAAAATATTTCACATT
TTTCATTCTTCATCTTTATTTACAGTCAACTTTCTCTCTCTAATTCGAAC
CTCTATTATTCGAATCTTTTTGTAATTCGAACTAAAATAATGATACCCTC
AGCTTGAAAGTAGTAAAAATTAGTCTCTGTAAGTCGAATCTTTCTCTAAT
TCGAAGAAAATGTTTGGCCCCGTTAAGATCGAATTAGAGAGAGTCAACTA
ACTATACTTCAAGCTTGATGGTTTCAGATTGAAACCGAAGGGGTTAGAGA
GGTATCTCCAACCTTTCTCAAGCAATAAAATATTAAGCCTTAAGTTTGCC
CTGCATTTGGAAATTTTGTTTAAAAAACACGCGGGTCACGTGTTTTGGAT
GGGAAATAAGTGGTTTAATTTCACATCCAGGAGTTTCGGATCTAGTCCCA
TCGGGGCTTTGAAATAAATGGTGGTACCCTTGTTGCTTAAACAACTGTAA
AACATTTTTTACTTTTTTCCAGCGCGGCAGCTCGTATACAGTTTCGACTA
CCTGACGGTTCAACATCATACAAACAATTTCCTTCTGATGCCAAATTCAT
TGTTGTTGTCAATCACGTAACAAAGGTAAAGGCAACTCCCTCTAATTCGA
ATCTCTATTGTTCGAATCTTTCTGTCGCTCGAACTAAAACATTGGTCCCC
TCAGCAGCTGGAAAGTGGTTTAAAAATTACTGTCTGTAATTCAAATATTT
CTCTAATTCGAAGAAAGCTTTTGGTCACTTGAAGATCGAATTAGAGAGAG
TCTAATTCTCATCCCATCATCGTAGTGTTCTAGTGTGTTGGTTCCCCTCT
CGAAAAAGGTAAACAACGAAAAAACGATCGCACGAACTTACTATATTATA
CTTTTAATACTTCCAGGAACTGGCGCCCCACATTCCAATTGTTCGTTTAA
CAACAGTCTACCCAAAACACGAATACACACAAGAAGATCATTCAAAGTCC
TTACGTGACCTTGGCCTCTCTCCAAACGCGTCCGTTATCGTTTCACACGT
AAGAAATCAGGGCATTCTATGCCGAGTGGGCTCCACATATTTTTTTAATT
TCCTTTTTATTAAAGAAGAAATACCCTGTTATGTTATGTTCATCTGAAAA
TTCTCAAACCATTTTACTAATTGCTGTTAAGTGTTATTTGTTTGTAATTA
TACTGTAAGGGTTGTTTATAATTACATACAGTAGTCTTCACATAACTTGA
GCCTCTTTATACAGTGGCGGATCTAAAGAGGTTCCAGATCTACGACGGAG
AGTCTTCATTTCCATATAAGGAGTATGGAAAAAGAAACACTCTCCATCAT
AAATTTTGATCCCTCCCCTGAGATCTTCTTAACTCTAAAAGATTTCCTGT
CCCTTAAGTTAACCCTTATAAACCAGTTTTCATAAGTCGAATCAATCAAT
AACTCAAACTGACTTCAAATCTATGTGCATGTTTCAGTCCACTGTATTTT
CAGATAATTCATAATTTCCATCTTTTTTTATCAGGGTCGCGCGTCTTCAT
CTTCATCCTCCTCACTCAATCCAATCTCCATTCTTATGACAGTTTTGGCG
CCCCTTCTAGCTCTCATCTATTGGTTCTTTTCACTCTTCAAATCTACACC
GACCACCACAACACCTAATGACGCGCCATCTGCTCAACAACAAGAACCTT
CTTCTATCTCGACAAACGACCATAGGTATTGTTTGACAGTTCGTTACTTA
TTTGCCAGATGTAATTAATAATTTTCTGAGGAGATCGTTAAAAGATTGAA
AATCAGCTTATATAAAAAAACAATCGAAATAAGGCTCTTCATATAGGAGA
TCTCTTGGCCTGGGGCAAGGAAAAGAAAAAAAACTGTGTGCTCGAAGTGA
TAAATGCTTCAATGAGAAAAATACCTGGTGCGCCACAAAAAAGTTTCTCT
CTTTGAAACTAATTTTCTCGAAATCTAAAAATTTTAAAAGAACCTTCCTA
CTTCGTTGGAAAGAAGAAAGATTTTGGTGGCTCATTTATTAAATTCGATT
GATTAGATCAAATGCTTAATTGAACAAAGAATTTACTTTCAAAAAGTGCT
CGAAAACGTTAAAAATCGACCTATCAAAATTTTAAAGATCGGAAATCGCA
ATAGTCTTTACGTGATTAAGAGCATTTTTCAGTAATCTTCATCAAATCAC
TTTAATTTGATTGAATGAAGTCTTTGTAATGCTGGATGTACCTCGAAACC
CATATTTAATGTATTTTTAATTGTAATTCAACCTTCCCTTTATATAACAA
AGGTCATTTATACAGCTAATCGCACGATGAGTTATTTTTTCTCGCGCCCT
TTCAAAGAGAGCAATTAATCGTTAATTGCATTCTGTAGAGAGCAATTAAT
CGTTAATCACACTCTTCAATGACGGGCCAATGTTTACAAAATCGATTTTA
ATGTTTTTTCTTACATTTTTATTATCGAACAGTTTAATTGCATTCGAAAT
TAATTTTGTGAGAAAGAAAATCTATAAGCAAAAGTGAGAAAAACCAACAT
AAAGAGAAGAGAAAAATGTAAACTTTCAGTCTAATTTTCTTTCCTGACGG
GGAAAAAGGCAGTGAAACTGATTGTGCGATTAGCTCGTAATCACATGATA
ACTCGTGCAATTATTCTCGAATTACACTCGTTATCATGTGATTACATATA
CTAATTATCATTTTTAATGACTGAAACGGAAATAATGATGCATCATGTAA
TTATGCTTCTGTTTAATTTGATAGGTCGATTTTTAACGTTTTTGACCACT
TTCAGAAAGTTATTTTTTTATTCAATTGAGCATAACTTTCGATCTAATGA
ACCGAATTCAAACAATGACCCATCAAAATTTAGGTTTATCTTTCTTCTCT
CCACCGGAATATGTATGGTAATTTTAAGACTTTTAGATTCGAGAAAATTA
GTTTTAAAAAGGGAAACTTTTTTGTGGCGCACCTGGTATTTATGATGATG
CAGTTTCGAATGGCGCCCTTTGAAATTTTTAGAATGCGGCTATATTTTTC
TAAGTTTTTTATGTTTCAACCATCAAACGATATTGCCGACCGTCAAATGA
TATTTCCGACCATCACGCTAAGATATTGCCGACCATTAAAAGATATTTCC
AACCGTATAAAGAAAAGAATTCGCGGCGTCGCACGCCGGTTAAGCTGTAG
CTGAACGCACTAAAAGTTCTTTGGATGTTGAAGGTGGCTTAAAAGCACGA
TATAATATAAGAAAATGAATCTCAAAGTCTGAATACAAAACCTTCAAAGT
TTGACTCTAGTCCTCCCCTGGGTGGCTTATCTTTTAACCATATTTGGATT
GTGTACTGTCCCCGTGACTTAATTCTTTGTTTTTAAATCTGCAAGTAGAT
TTTTGCACCTGGTATTTATGATAATTTTCCAGCCTACAAATTTAAATTTA
AATTTTTGTTGTTGTTTGGTACTGAAAGTATCAGAAGTCCACATTGCTTT
CTCTCGAGGCTTGATGACTAACTTTTCACGATTTCTGTCTGTTTACGCAT
TTTCCCTTCTGTTCGAATAATCTTATTTGCTTTATAGGGATGCGTCAGTA
CGGAGGCGTAATTTGGGCGGTGGATCTAACATCAGGCGTTTATATGACGA
CAAGCCAGATGATGAAGACAACGCCACATGGAATGGAAATTCAACACAAC
AAATGTAGTAGAAAAGATATTCAAATTGTCAGTAGTAAGATAAGATTTAT
TTTAATTGTTTTGTTTGTTTGTCTGTTACCAGAAATAGTATGTTTTTGGT
TAATAATTTATCAAATGGAAAAATTGGTTGAAAACCCAGCGACATCCGAA
TTGGCCAGTGTTGGTAAAAGGGAGTTGTTGGTTCCATTGGATGCTGAAAG
ATTGTTAAAGACAATTAATGGTAGTTTGATTTTTAGATACATAGAACACT
CTTCCATTATTTTGAAATTTGAAGGAATTGGGCCGTTAAAAATCATGAAA
TAATCTCTTTGGAGACTTTTTGAAACTTACTACCTACTGTTAATGAATAA
AATGATATAATGCTACCCAACAAGACATTTTTAACTGAAGATTAAAATGG
CGACAGAAATTGAGGAACCAATTGAAGCAACCAAGGTCAAAATAAGAATA
TATTAAACTCCTGAAAATTGGACAAAATCGCACGGTTGTCTATACGGTAT
TAAGAATTATTCGTTGTGTAATGGTTTATGAAACTTCGAGGTTCGATTTT
CTGCGAATGCAAAACACTCTTTAAACCTATTAAAAACCATTATGAACATT
TTGTATCTTTATCAATAAAATATGCAGTAGATGTTGGTTTCCAAATTTAT
CATTATTTATATTTTGAATTTTACGGTATAATTATATTAGCATATAATAT
AAATTTTTACGTTATATTTTGGAAGTTTTTCTCGCCTTTCGTAAAACAAA
ATGATTATCCAATTATCGCAACAAATATGCGGGGAGCTTCTAAATGATCA
TAATATGTATAGTGTAGAGAAGACTATTATTATGGATCTAACTTTTTTTT
CCAAATTTCATAATGTGGCTACGTTGCGAGAGATTTATTTTGTATTTTCA
GGTAGTTTTCATTTGCAGAACTTAGGTTATGTTTTTAAATAAACAACGTC
AATTTTCAAGTCTAAGCCTAAACTTGAAAATTAACGCTAAAGGTTTTAGT
TTTACATAACTTTCCCATTAATCTTCCACAAATTTTCTCCCCTTCGCTAT
TATGAATTTGTTGTCGAATTTGCTGGAAATATTTTTTATATATTATGATA
ACTTGATATCTATATTGTATAAAATTTGATAAATCAATCACGCAAACTAC
AATGAAAATATAGATTATAAAAGCTATAAATTATGAATCAACGAAACTTA
TATCTTTTTCATTTTTATGGGCTTCTTGATCCAAAAACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007292XLOC_007292Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013013-exon-sc0000161-1575043694:316000..316151TCONS_00013013-exon-sc0000161-1575043694:316000..316151Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:315724..315773TCONS_00013013-exon-sc0000161-1575043694:315724..315773Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:315227..315311TCONS_00013013-exon-sc0000161-1575043694:315227..315311Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:307740..307855TCONS_00013013-exon-sc0000161-1575043694:307740..307855Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:307313..307417TCONS_00013013-exon-sc0000161-1575043694:307313..307417Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:306608..306715TCONS_00013013-exon-sc0000161-1575043694:306608..306715Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:305909..306201TCONS_00013013-exon-sc0000161-1575043694:305909..306201Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:305077..305179TCONS_00013013-exon-sc0000161-1575043694:305077..305179Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:304654..304785TCONS_00013013-exon-sc0000161-1575043694:304654..304785Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:303977..304167TCONS_00013013-exon-sc0000161-1575043694:303977..304167Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1575043694:300762..302114TCONS_00013013-exon-sc0000161-1575043694:300762..302114Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:316000..316151TCONS_00013013-exon-sc0000161-1510915933:316000..316151Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:315724..315773TCONS_00013013-exon-sc0000161-1510915933:315724..315773Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:315227..315311TCONS_00013013-exon-sc0000161-1510915933:315227..315311Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:307740..307855TCONS_00013013-exon-sc0000161-1510915933:307740..307855Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:307313..307417TCONS_00013013-exon-sc0000161-1510915933:307313..307417Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:306608..306715TCONS_00013013-exon-sc0000161-1510915933:306608..306715Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:305909..306201TCONS_00013013-exon-sc0000161-1510915933:305909..306201Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:305077..305179TCONS_00013013-exon-sc0000161-1510915933:305077..305179Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:304654..304785TCONS_00013013-exon-sc0000161-1510915933:304654..304785Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:303977..304167TCONS_00013013-exon-sc0000161-1510915933:303977..304167Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1510915933:300762..302114TCONS_00013013-exon-sc0000161-1510915933:300762..302114Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:316000..316151TCONS_00013013-exon-sc0000161-1491911889:316000..316151Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:315724..315773TCONS_00013013-exon-sc0000161-1491911889:315724..315773Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:315227..315311TCONS_00013013-exon-sc0000161-1491911889:315227..315311Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:307740..307855TCONS_00013013-exon-sc0000161-1491911889:307740..307855Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:307313..307417TCONS_00013013-exon-sc0000161-1491911889:307313..307417Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:306608..306715TCONS_00013013-exon-sc0000161-1491911889:306608..306715Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:305909..306201TCONS_00013013-exon-sc0000161-1491911889:305909..306201Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:305077..305179TCONS_00013013-exon-sc0000161-1491911889:305077..305179Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:304654..304785TCONS_00013013-exon-sc0000161-1491911889:304654..304785Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:303977..304167TCONS_00013013-exon-sc0000161-1491911889:303977..304167Clytia hemisphaericaexon
TCONS_00013013-exon-sc0000161-1491911889:300762..302114TCONS_00013013-exon-sc0000161-1491911889:300762..302114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:300762..316151 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.2288	25.7005	6.31578	3.62871	10.2474	7.81211	17.0104	17.5037	15.9734	17.0402	14.4027	12.3465	12.1295	12.357	12.8384	14.5204	18.7894	18.099	9.94921	10.833	14.588	14.6398	21.563	22.2531	18.4966	20.6555	9.03573	6.80795	15.6586	15.7561
Blast
[Close]
BLAST of TCONS_00013013 vs. Swiss-Prot (Human)
Match: UBXN4 (UBX domain-containing protein 4 OS=Homo sapiens GN=UBXN4 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 4.159e-25
Identity = 108/282 (38.30%), Postives = 154/282 (54.61%), Query Frame = 2 
Query:  644 RDEGRELSHARRDLAERQAKQLADDLAKXXXXXXXXXXXVKQQIKQDREDKVARFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQFRLPDGSTSYKQFPSDAKFIVVVNHVTKELAPHIPIVRLTTVYPKHEYTQEDHSKSLRDLGLSPNASVI-VSHGR--AXXXXXXXLNPISILMTVLAPLLALIYWFFS--LFKSTPTTTTPNDAPSAQQQEPSSISTNDHRDASVRRRNLGGGSN-------IRRLYDDKPDDEDNATWNGNSTQQM 1453
            R  G+E+   +R   E   K++ ++  + + E+RAARER+KQQI  DR ++ ARF   K+  E  K   +  K AE E K ++    R   ARIQFRLPDGS+   QFPSDA          + +        L T++P+ E+T+ED+ K L DL L+P+ASV+ +  GR  AS   SSS +  ++L TVL P LA I+   S  LF + P T T     S++   P+S S ++ R+  VR+R L    +       I RL      +++N TWNGNSTQQM
Sbjct:  229 RKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARFAKTKEEVEAAKAAALLAKQAEMEVKRESYARERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTKEDYKKKLLDLELAPSASVVLLPAGRPTASIVHSSSGDIWTLLGTVLYPFLA-IWRLISNFLFSNPPPTQTSVRVTSSEPPNPASSSKSEKREP-VRKRVLEKRGDDFKKEGKIYRLRTQDDGEDENNTWNGNSTQQM 508
The following BLAST results are available for this feature:
BLAST of TCONS_00013013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBXN44.159e-2538.30UBX domain-containing protein 4 OS=Homo sapiens GN... [more]
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