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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013012 ID=TCONS_00013012|Name=TCONS_00013012|organism=Clytia hemisphaerica|type=transcript|length=2435bpRun BLAST on NCBI protein sequence of TCONS_00013012-protein >TCONS_00013012-protein ID=TCONS_00013012-protein|Name=TCONS_00013012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp MQWFQGDVSEAIQKAISEQKMFIVFVRDDKEESQKMEELCNSDEVKNICTRun BLAST on NCBI transcript from alignment at sc0000161:300762..316145- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00013012 ID=TCONS_00013012|Name=TCONS_00013012|organism=Clytia hemisphaerica|type=transcript|length=15384bp|location=Sequence derived from alignment at sc0000161:300762..316145- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000161:300762..316145- >TCONS_00013012 ID=TCONS_00013012|Name=TCONS_00013012|organism=Clytia hemisphaerica|type=CDS|length=15246bp|location=Sequence derived from alignment at sc0000161:300762..316145- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00013012 vs. Swiss-Prot (Human)
Match: UBXN4 (UBX domain-containing protein 4 OS=Homo sapiens GN=UBXN4 PE=1 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.503e-25 Identity = 108/282 (38.30%), Postives = 154/282 (54.61%), Query Frame = 2
Query: 638 RDEGRELSHARRDLAERQAKQLADDLAKXXXXXXXXXXXVKQQIKQDREDKVARFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQFRLPDGSTSYKQFPSDAKFIVVVNHVTKELAPHIPIVRLTTVYPKHEYTQEDHSKSLRDLGLSPNASVI-VSHGR--AXXXXXXXLNPISILMTVLAPLLALIYWFFS--LFKSTPTTTTPNDAPSAQQQEPSSISTNDHRDASVRRRNLGGGSN-------IRRLYDDKPDDEDNATWNGNSTQQM 1447
R G+E+ +R E K++ ++ + + E+RAARER+KQQI DR ++ ARF K+ E K + K AE E K ++ R ARIQFRLPDGS+ QFPSDA + + L T++P+ E+T+ED+ K L DL L+P+ASV+ + GR AS SSS + ++L TVL P LA I+ S LF + P T T S++ P+S S ++ R+ VR+R L + I RL +++N TWNGNSTQQM
Sbjct: 229 RKTGKEMLDYKRKQEEELTKRMLEERNREKAEDRAARERIKQQIALDRAERAARFAKTKEEVEAAKAAALLAKQAEMEVKRESYARERSTVARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTKEDYKKKLLDLELAPSASVVLLPAGRPTASIVHSSSGDIWTLLGTVLYPFLA-IWRLISNFLFSNPPPTQTSVRVTSSEPPNPASSSKSEKREP-VRKRVLEKRGDDFKKEGKIYRLRTQDDGEDENNTWNGNSTQQM 508 The following BLAST results are available for this feature:
BLAST of TCONS_00013012 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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