TCONS_00012995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012995
Unique NameTCONS_00012995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012995 ID=TCONS_00012995|Name=TCONS_00012995|organism=Clytia hemisphaerica|type=transcript|length=375bp
GGAGACATTACTTTCAAAATACACAAGGCATCATATATGTAATTGATTCA
AACGATAGAGAACGCATACAGGAAGCACAAGAGGTCTTGAAAAACATGCT
CAGCCAAGATGAGTTAACCGATGCTGCTTTACTGGTTCTTGCTAATAAAC
AGGACTTGCCAAACGCACTGAGTGCATCACAAATCACTGAGAAATTAGGA
TTGCTCGACATTCGAAATCGAAGTTGGTATACACAAGCTACTTGCGCGTC
GAATGGTGATGGTCTCTATGAAGGACTTGATTGGCTTTCTAAtgaaatga
agaaaagaaaagattactGAGTTGAGAGGTGATCAAAGACTGGAGTAAAC
TTTCGAGTCGTATTGTAATGATATA
Run BLAST on NCBI

protein sequence of TCONS_00012995-protein

>TCONS_00012995-protein ID=TCONS_00012995-protein|Name=TCONS_00012995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
RHYFQNTQGIIYVIDSNDRERIQEAQEVLKNMLSQDELTDAALLVLANKQ
DLPNALSASQITEKLGLLDIRNRSWYTQATCASNGDGLYEGLDWLSNEMK
KRKDY
Run BLAST on NCBI

transcript from alignment at sc0000161:26947..27992-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012995 ID=TCONS_00012995|Name=TCONS_00012995|organism=Clytia hemisphaerica|type=transcript|length=1046bp|location=Sequence derived from alignment at sc0000161:26947..27992- (Clytia hemisphaerica)
GGAGACATTACTTTCAAAATACACAAGGTAAGATGAACGTAATATAGTAA
TGTTTCAACGTCCACTTAACGTTATATGAAGGAGGATATTATAGACATTA
TTTGTTTGGTGAACAAATCAACACAAAAAGTGCTCGATACCAAAGATAGA
GTTTCCATTAGATTAAAATCGTATATTTCTATGGCATGTTGTAAAAATTT
GCAAATACTTTATTCGTCATATATCGTTACACATGGAGATATTATAGCCA
TATACACGTTGTTTCATGCATACGTTTTCTACTAACCGGGGTCAATCTAA
ACAAGATTATATATACATCCTGATATCTTCCAAAATCTCTACTATGATGG
AAGTATAAATTCTGATGTTTTCTACTAGCTGGCAGGAAATCTAAAACTTA
TGCAAAATTAAAATCTTTAATTCATATCAGGCATCATATATGTAATTGAT
TCAAACGATAGAGAACGCATACAGGAAGCACAAGAGGTCTTGAAAAACAT
GCTCAGCCAAGATGAGTTAACCGATGCTGCTTTACTGGTTCTTGCTAATA
AACAGGTGAGGTTTCCACTCATTATTACCTTTCCAATGGAACTGAAAATC
CTGTCCTTTATAACTTTTACTTTACTTGAACCATAAAAATCCTCTTATCT
TCCTTGTTAATTAAAGATTAGAATTTAGAATGTTTAATTTCTTGAGAACA
ATGGCTTCAACAGTAAAGGGTCAGCCAGAACACTCCAGTCCTATCAATTT
AGATTATATAATGAATAAAAATCTATGCCAATAAAAATCAACTAAAATCT
AAAAACTTTAAACACTTTTTCAGGACTTGCCAAACGCACTGAGTGCATCA
CAAATCACTGAGAAATTAGGATTGCTCGACATTCGAAATCGAAGTTGGTA
TACACAAGCTACTTGCGCGTCGAATGGTGATGGTCTCTATGAAGGACTTG
ATTGGCTTTCTAATGAAATGAAGAAAAGAAAAGATTACTGAGTTGAGAGG
TGATCAAAGACTGGAGTAAACTTTCGAGTCGTATTGTAATGATATA

Coding sequence (CDS) from alignment at sc0000161:26947..27992-

>TCONS_00012995 ID=TCONS_00012995|Name=TCONS_00012995|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000161:26947..27992- (Clytia hemisphaerica)
GACTTGCCAAACGCACTGAGTGCATCACAAATCACTGAGAAATTAGGATT
GCTCGACATTCGAAATCGAAGTTGGTATACACAAGCTACTTGCGCGTCGA
ATGGTGATGGTCTCTATGAAGGACTTGATTGGCTTTCTAATGAAATGAAG
AAAAGAAAAGATTACTGAGCATCATATATGTAATTGATTCAAACGATAGA
GAACGCATACAGGAAGCACAAGAGGTCTTGAAAAACATGCTCAGCCAAGA
TGAGTTAACCGATGCTGCTTTACTGGTTCTTGCTAATAAACAGAGACATT
ACTTTCAAAATACACAAGGACTTGCCAAACGCACTGAGTGCATCACAAAT
CACTGAGAAATTAGGATTGCTCGACATTCGAAATCGAAGTTGGTATACAC
AAGCTACTTGCGCGTCGAATGGTGATGGTCTCTATGAAGGACTTGATTGG
CTTTCTAATGAAATGAAGAAAAGAAAAGATTACTGAGCATCATATATGTA
ATTGATTCAAACGATAGAGAACGCATACAGGAAGCACAAGAGGTCTTGAA
AAACATGCTCAGCCAAGATGAGTTAACCGATGCTGCTTTACTGGTTCTTG
CTAATAAACAGAGACATTACTTTCAAAATACACAAGGACTTGCCAAACGC
ACTGAGTGCATCACAAATCACTGAGAAATTAGGATTGCTCGACATTCGAA
ATCGAAGTTGGTATACACAAGCTACTTGCGCGTCGAATGGTGATGGTCTC
TATGAAGGACTTGATTGGCTTTCTAATGAAATGAAGAAAAGAAAAGATTA
CTGAGCATCATATATGTAATTGATTCAAACGATAGAGAACGCATACAGGA
AGCACAAGAGGTCTTGAAAAACATGCTCAGCCAAGATGAGTTAACCGATG
CTGCTTTACTGGTTCTTGCTAATAAACAGAGACATTACTTTCAAAATACA
CAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007285XLOC_007285Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012995-proteinTCONS_00012995-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012995-exon-sc0000161-1575043694:27966..27992TCONS_00012995-exon-sc0000161-1575043694:27966..27992Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1575043694:27438..27562TCONS_00012995-exon-sc0000161-1575043694:27438..27562Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1575043694:26947..27169TCONS_00012995-exon-sc0000161-1575043694:26947..27169Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1510915933:27966..27992TCONS_00012995-exon-sc0000161-1510915933:27966..27992Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1510915933:27438..27562TCONS_00012995-exon-sc0000161-1510915933:27438..27562Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1510915933:26947..27169TCONS_00012995-exon-sc0000161-1510915933:26947..27169Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1491911889:27966..27992TCONS_00012995-exon-sc0000161-1491911889:27966..27992Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1491911889:27438..27562TCONS_00012995-exon-sc0000161-1491911889:27438..27562Clytia hemisphaericaexon
TCONS_00012995-exon-sc0000161-1491911889:26947..27169TCONS_00012995-exon-sc0000161-1491911889:26947..27169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:26947..27992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00401	0.71822	0	0	0	0.455503	0	0.544457	2.57539	6.98684	6.16302	4.26814	2.6387	2.50985	1.1367	0	1.12308	1.31384	10.2274	24.1772	4.50641	5.23542	0.0757716	4.62671	0	3.65184e-06	6.76659	4.33538	28.0994	7.14038
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00012995 vs. Swiss-Prot (Human)
Match: ARF3 (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 8.125e-51
Identity = 71/103 (68.93%), Postives = 92/103 (89.32%), Query Frame = 3 
Query:    3 RHYFQNTQGIIYVIDSNDRERIQEAQEVLKNMLSQDELTDAALLVLANKQDLPNALSASQITEKLGLLDIRNRSWYTQATCASNGDGLYEGLDWLSNEMKKRK 311
            RHYFQNTQG+I+V+DSNDRER+ EA+E L  ML++DEL DA LLV ANKQDLPNA++A++IT+KLGL  +R+R+WY QATCA++GDGLYEGLDWL+N++K +K
Sbjct:   79 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00012995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF38.125e-5168.93ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
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