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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012989 ID=TCONS_00012989|Name=TCONS_00012989|organism=Clytia hemisphaerica|type=transcript|length=3206bp
tgcaccaacactttccaacttttaattgcactgttcgaaatagataacat
aacccccgtttttagtaataagttggagatacgatatttcacagaaaagt
gctaccaaggggtatttcgggttcCATATCTttcgaaggacttttctgtt
cgccttgaaatttaaaaaaattcttaacctaaggttgaactaccactggt
gtaaaaatgaacgttatagcataagtagaaaaaaagctcaatttttacaa
tcgcaaatttaaccgctaaaaatcgcgaatttttcaaccaaaaatacact
caaatatagcgcttttgattctctgaaacaagcaaataaaaattccataa
ttatatttgactatcaaaagttacaggcattcttgtttccactgccaatt
atatctggacagactttagaagCTTCATTGAAGCATATAATAACTATATA
TTCGAACTTCACACCTTCATAAAAACTAATAATTGTATCTCCGCTTTGAA
AAATCTAGGAGGGTTCTTACAGTAAAAATGATATAACCTATTCATCTCAA
ATTCAAGCACCAAATAAATAAATCCcacaaaatcattaaaaagcgttttc
atttttaaaatctaCTTGCATTGTTCTTTGTCAGACAATTCTACCATTCC
ACTAACAGCTGATTGAAAACCAGCATTAAATTCCAAATTGACTTCATTCG
TTTCATAATTAGCTCTTCGATCACTGAATCGATCAGTTTTACTGGGGCCA
CCAACCAATGCACCGTACAGAATCTGAGGATTTGGTTGGTTTGTAAAGAG
CTGATCTAGGCTGCATGAACCGGTTGATGGACAGGAGCTGGATTTATGGA
ACGGTTGCTGAGGTGGGTTCTCACCGAAGCCCACAACAAAGCTACGACCA
GTATCACCAAGGATATAGTTGATCTGACTGGTCGCGAATTGGTTAAAGAA
TTGAATATCCGCCCCTTCAATTTTGGCAGTAATAAGCGATAGGAAAGCCA
GATTTGATGCATATCTTAATGAGCCATATTTATCGACATAAAGAAGACCT
TTTGGTGTATATTCCGCATTACTCAAATACGATTTGAAGTCTTCAAAGAA
TGATTTGTCTGGATTCAAATTCAACTGCAATGCAAGGATCTTGACAGCTG
ACCATTTATCATCCCAGGAGAATACAGTTGGCTTATTTGGTgcattttca
acaaatttttgatAGTCGTCCTTATAGACTGGATCTCCAGTAGTCTTGTA
TAACCAAAGTGCTGCCCAGGCTAGCTCATCTTCAAATCCACTACTTATGT
AAACTGTAGCGTCGGTTATTGATTTATGATATTCGCCTTTAAATTCCTTA
GCAAATGAATATAATTCTTCAGCATGTTGTAGACATTCGTCAGCGTATAT
AGTATTACCATTGTTAAGAAACAAAATGGATCCTACAGCCAGAGCGGCAG
CCGTTTCCGCAGCAAGATCAGATCCAGGAAGTTGCTCATTGATCTCATAA
ACtggtcttgcaacattcatttCCTCAGGACGTCCCCAGAATCCATTATC
AAGGTCCTTATCGCCGACTTGTCCAAAGAATCGATTAGCAGAAGGGTGAC
ATTTGATGAAGTAATCAGTTCCCCATTTGATGGCTTTCAATCCATATTCA
TATTGTCCTGATGAGGTATAGCCTTTCTTGAATTCCAACATCCCCCATGC
AAGATTGGTGACAGTTGCAGCCATTGGAAAACCAAATTTGACATAGCTTG
CAGAGTCAAAATAACCACCACTTAGATCAAAACCAACCTGGGATCCATCA
TTCAAGGTTGAGTCCTTTCTCCATGTGACACGCTGGTCTATTGGGAGTTT
CCCTGATCTTTGAGCTTCGTAGAAAAGTAAGGATTTTTGTAACACATCAC
CATAGTCGTATAGACATAATTTAGATTGCGCTTGAGTTGTCGTTGTAGTG
GTTGGGGTGGACGTTGTCGTAGTAGGGgttgttgttgtcgttgttgtcgt
AGTTGGTGTGGTCGTAGTCGTAATAGGAGTGGTAGTTGTTGTAGttgggg
tggtcgttgtcgtagtTGGGGTGGTTGTTGTCGTAGTAGGAGTGGTAGTT
GTTGTAGttggggtggtcgttgtcgtaataggagtggtcgttgtcgtagt
aggactggttgttgttgtagttggtGTGGTCGTTGTCGTAGTTGGGGTGG
TTGTTGTGGTTGTCGTTGTAGTTGGcgtggtcgttgtcgttgtcGTTGTC
GTTGTCGTAGTTGGGTTGGTCGTAGCCCTGTGTCTACGCCGGCGTCGGGA
GCTCTTTGTTGTTCTCCGAGAGGCTCTTCTTCTACTCGTCGGTGTCGATC
TCCCAGATTTAGGTGTTGTCATTTTGTGTGTCGTATATTTGACTGTAGAA
TGGCTGTGTCTCCTTCGTGAAGTTGGGGTCGATTTAGGTCTATACGTCGT
AGCCCTGTGTCTACGCCGGCGTCGGGAGctctttgttgttctacggtgat
tatcatcatcatcgtcatcatcatcatcatcgtcgtcgtcgtcgtcgtcg
tcgtcgtcatCGTCACCATCAATCAAGTCAATTAGATTCCAACGCCCACC
ACGCCCACGTCCATGACCACGCCTGCCCTGTCTCCAAGGGCGCCCACCGT
TTCCTCTCCTTCCACCAATCACACGAAGATTAACTCCACCATTTTGTCTC
CCTCTTCCACGTCCTCGGCTATAACGTTTTcgaatttcaaatatttcatt
aTCATCATCGTTGTTATCCAATGTTTCACAAGTGTTCCGAACCGAATTTT
TAAATATTCCACAAAATCGGGCACATTTAAATAAGGTGTATAAACCTGTC
TTTCCGGTAACGTCAAAATTGAGACCAGTTTTCGTTAACAAAACAGCATC
CTTGCTTGAATCAGTAATCACTGATTTTCCATCTTCATTGCTAATTATTC
TTAAGTTTGGATGTTTCTCTGATAGCAGCAAAGAAGGATCGGCAAGTTCG
ATTCTCAGTTGCCAACTGGATACATCTTTTGGTGGTTCGATTGATACATG
GTAAACACAATTATCACCAGACTGCTCTGTCTTGATCTCCAAGTTGCCAT
AGTTACTTTTACAGCCAAAACATTTTGCTAATGACAGCAAAActaagaaa
aaaactgctttcGAATTTCTTTCCATTCTGACTTGCTCATAAATGACAAA
GAATAT Run BLAST on NCBI transcript from alignment at sc0000161:397990..401513+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012989 ID=TCONS_00012989|Name=TCONS_00012989|organism=Clytia hemisphaerica|type=transcript|length=3524bp|location=Sequence derived from alignment at sc0000161:397990..401513+ (Clytia hemisphaerica)
tgcaccaacactttccaacttttaattgcactgttcgaaatagataacat
aacccccgtttttagtaataagttggagatacgatatttcacagaaaagt
gctaccaaggggtatttcgggttcCATATCTttcgaaggacttttctgtt
cgccttgaaatttaaaaaaattcttaacctaaggttgaactaccactggt
gtaaaaatgaacgttatagcataagtagaaaaaaagctcaatttttacaa
tcgcaaatttaaccgctaaaaatcgcgaatttttcaaccaaaaatacact
caaatatagcgcttttgattctctgaaacaagcaaataaaaattccataa
ttatatttgactatcaaaagttacaggcattcttgtttccactgccaatt
atatctggacagactttagaagCTTCATTGAAGCATATAATAACTATATA
TTCGAACTTCACACCTTCATAAAAACTAATAATTGTATCTCCGCTTTGAA
AAATCTAGGAGGGTTCTTACAGTAAAAATGATATAACCTATTCATCTCAA
ATTCAAGCACCAAATAAATAAATCCcacaaaatcattaaaaagcgttttc
atttttaaaatctaCTTGCATTGTTCTTTGTCAGACAATTCTACCATTCC
ACTAACAGCTGATTGAAAACCAGCATTAAATTCCAAATTGACTTCATTCG
TTTCATAATTAGCTCTTCGATCACTGAATCGATCAGTTTTACTGGGGCCA
CCAACCAATGCACCGTACAGAATCTGAGGATTTGGTTGGTTTGTAAAGAG
CTGATCTAGGCTGCATGAACCGGTTGATGGACAGGAGCTGGATTTATGGA
ACGGTTGCTGAGGTGGGTTCTCACCGAAGCCCACAACAAAGCTACGACCA
GTATCACCAAGGATATAGTTGATCTGACTGGTCGCGAATTGGTTAAAGAA
TTGAATATCCGCCCCTTCAATTTTGGCAGTAATAAGCGATAGGAAAGCCA
GATTTGATGCATATCTTAATGAGCCATATTTATCGACATAAAGAAGACCT
TTTGGTGTATATTCCGCATTACTCAAATACGATTTGAAGTCTTCAAAGAA
TGATTTGTCTGGATTCAAATTCAACTGCAATGCAAGGATCTTGACAGCTG
ACCATTTATCATCCCAGGAGAATACAGTTGGCTTATTTGGTgcattttca
acaaatttttgatAGTCGTCCTTATAGACTGGATCTCCAGTAGTCTTGTA
TAACCAAAGTGCTGCCCAGGCTAGCTCATCTTCAAATCCACTACTTATGT
AAACTGTAGCGTCGGTTATTGATTTATGATATTCGCCTTTAAATTCCTTA
GCAAATGAATATAATTCTTCAGCATGTTGTAGACATTCGTCAGCGTATAT
AGTATTACCATTGTTAAGAAACAAAATGGATCCTACAGCCAGAGCGGCAG
CCGTTTCCGCAGCAAGATCAGATCCAGGAAGTTGCTCATTGATCTCATAA
ACtggtcttgcaacattcatttCCTCAGGACGTCCCCAGAATCCATTATC
AAGGTCCTTATCGCCGACTTGTCCAAAGAATCGATTAGCAGAAGGGTGAC
ATTTGATGAAGTAATCAGTTCCCCATTTGATGGCTTTCAATCCATATTCA
TATTGTCCTGATGAGGTATAGCCTTTCTTGAATTCCAACATCCCCCATGC
AAGATTGGTGACAGTTGCAGCCATTGGAAAACCAAATTTGACATAGCTTG
CAGAGTCAAAATAACCACCACTTAGATCAAAACCAACCTGGGATCCATCA
TTCAAGGTTGAGTCCTTTCTCCATGTGACACGCTGGTCTATTGGGAGTTT
CCCTGATCTTTGAGCTTCGTAGAAAAGTAAGGATTTTTGTAACACATCAC
CATAGTCGTATAGACATAATTTAGATTGCGCTTGAGTTGTCGTTGTAGTG
GTTGGGGTGGACGTTGTCGTAGTAGGGgttgttgttgtcgttgttgtcgt
AGTTGGTGTGGTCGTAGTCGTAATAGGAGTGGTAGTTGTTGTAGttgggg
tggtcgttgtcgtagtTGGGGTGGTTGTTGTCGTAGTAGGAGTGGTAGTT
GTTGTAGttggggtggtcgttgtcgtagttggggtggtcgttgtcgtagt
aGGAGTGGTTGTAGttggggtggtcgttgtcgtagttggggtggtcgttg
ttgtagtagGAGTGGTAGTTGTTGTAGttggggtggtcgttgtcgtagtt
gaggtggtcgttgtcgtaataggagtggtcgttgtcgtagtaggactggt
tgttgttgtagttggtGTGGTCGTTGTCGTAGTTGGGGTGGTTGTTGTGG
TTGTCGTTGTAGTTGGcgtggtcgttgtcgttgtcGTTGTCGTTGTCGTA
GTTGGGTTGGTCGTAGCCCTGTGTCTACGCCGGCGTCGGGAGCTCTTTGT
TGTTCTCCGAGAGGCTCTTCTTCTACTCGTCGGTGTCGATCTCCCAGATT
TAGGTGTTGTCATTTTGTGTGTCGTATATTTGACTGTAGAATGGCTGTGT
CTCCTTCGTGAAGTTGGGGTCGATTTAGGTCTATACGTCGTAGCCCTGTG
TCTACGCTGGCGGCGGGAGCTCTTTGTTGTTCTCCGAGAAGCTCTTCTTC
TACTCGTCGGTGTAGATCTCCTAGGTTTAGGTGTTGTCCTTTTGTGTGTC
GTATATTTGACTGTAGAATGCCTGTGTCTCCTTCGTGAAGTTGGGGTCGA
TCTAGGTCTATACGTCGTAGCCCTGTGTCTACGCCGGCGTCGGGAGctct
ttgttgttctacggtgattatcatcatcatcgtcatcatcatcatcatcg
tcgtcgtcgtcgtcgtcgtcgtcgtcatCGTCACCATCAATCAAGTCAAT
TAGATTCCAACGCCCACCACGCCCACGTCCATGACCACGCCTGCCCTGTC
TCCAAGGGCGCCCACCGTTTCCTCTCCTTCCACCAATCACACGAAGATTA
ACTCCACCATTTTGTCTCCCTCTTCCACGTCCTCGGCTATAACGTTTTcg
aatttcaaatatttcattaTCATCATCGTTGTTATCCAATGTTTCACAAG
TGTTCCGAACCGAATTTTTAAATATTCCACAAAATCGGGCACATTTAAAT
AAGGTGTATAAACCTGTCTTTCCGGTAACGTCAAAATTGAGACCAGTTTT
CGTTAACAAAACAGCATCCTTGCTTGAATCAGTAATCACTGATTTTCCAT
CTTCATTGCTAATTATTCTTAAGTTTGGATGTTTCTCTGATAGCAGCAAA
GAAGGATCGGCAAGTTCGATTCTCAGTTGCCAACTGGATACATCTTTTGG
TGGTTCGATTGATACATGGTAAACACAATTATCACCAGACTGCTCTGTCT
TGATCTCCAAGTTGCCATAGTTACTTTTACAGCCAAAACATTTTGCTAAT
GACAGCAAAActaagaaaaaaactgctttcGAATTTCTTTCCATTCTGAC
TTGCTCATAAATGACAAAGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012989-exon-sc0000161-1491911889:397990..400101 | TCONS_00012989-exon-sc0000161-1491911889:397990..400101 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1510915933:397990..400101 | TCONS_00012989-exon-sc0000161-1510915933:397990..400101 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1575043694:397990..400101 | TCONS_00012989-exon-sc0000161-1575043694:397990..400101 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1491911889:400243..400567 | TCONS_00012989-exon-sc0000161-1491911889:400243..400567 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1510915933:400243..400567 | TCONS_00012989-exon-sc0000161-1510915933:400243..400567 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1575043694:400243..400567 | TCONS_00012989-exon-sc0000161-1575043694:400243..400567 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1491911889:400745..401513 | TCONS_00012989-exon-sc0000161-1491911889:400745..401513 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1510915933:400745..401513 | TCONS_00012989-exon-sc0000161-1510915933:400745..401513 | Clytia hemisphaerica | exon |
| TCONS_00012989-exon-sc0000161-1575043694:400745..401513 | TCONS_00012989-exon-sc0000161-1575043694:400745..401513 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000161 | supercontig | sc0000161:397990..401513 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001701 | Glyco_hydro_9 |
| IPR008928 | 6-hairpin_glycosidase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
The following BLAST results are available for this feature:
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