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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012969 ID=TCONS_00012969|Name=TCONS_00012969|organism=Clytia hemisphaerica|type=transcript|length=6320bpRun BLAST on NCBI transcript from alignment at sc0000161:204151..246190+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012969 ID=TCONS_00012969|Name=TCONS_00012969|organism=Clytia hemisphaerica|type=transcript|length=42040bp|location=Sequence derived from alignment at sc0000161:204151..246190+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00012969 vs. Swiss-Prot (Human)
Match: LTBP4 (Latent-transforming growth factor beta-binding protein 4 OS=Homo sapiens GN=LTBP4 PE=1 SV=2) HSP 1 Score: 236.884 bits (603), Expect = 2.209e-62 Identity = 204/554 (36.82%), Postives = 267/554 (48.19%), Query Frame = 1
Query: 1 CNDINECLKDPCP-SNATCNNIQGSFGCTCKDGFTG--DGFNCTNINEC--LSSPCDANATCTDTIGSYTCKCNDGYFG--NGTVCNAL--CSSTGNDCVENATCTVDGSNTVCTCPVXXXXXXXXXXXXCSDINECDNDP--CSPNATCANTPGSFVCTCTNGFE--GTGLFCSDKNECLTDPCHPD---AECKNTFGSYLCKCKTGFTGD-GNTNCADINECDTDPCSPNASCNNTKGSFIC-TCNAGWKGNGTVCTDRDECLD--DPCDPNADCTNVVGSYECACKVGY---SGDGFTCKDKNECTNGENNCGPNADCRNTDGSFTCICQAGLTG--NGIVCEDINECLSDPCHPNATCTNTQRSYNCQCKPGFDGNG--THCDDVDECLNPLMNRCSPQKFCVNTLGAFKCV--CDQFYVTQSPFVCVDKDECLDTPCISPAICQ----NNIGSNYTC--SCPNGYNLNPSGNKCDDIDECASPTLNNCNPTLGVCKNIPGSFECSCKSGYQG--NGITCLDIDECATGDDNCSPRATCTNIPGSFTCKC 1551
C D++EC + P P + C N GSF C C GF C +++EC + PCD C +T GS+ C C GY +G C + C+ + C A + GS C CP G+ G + D++EC +P C P C NT GSF C C GF G G C D +EC P P C+NT GS+ C C GF + + C D++EC+ P C N+ GSF C TC +G + CTD DEC PC P+ CTN GS+ C+C GY SG C D NEC G + C P+ +C NTDGSF C C G G C D++EC + + CTNT S+ C C PG C DVDEC C Q+ C N+ G+++CV CD Y C D DEC + P IC N +Y C +C GY P G C D+DEC + + + VC+N+PGSF+C C GY+G +G C+D++EC T C A C N+ GSF C C
Sbjct: 585 CIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPRAAECLDVDECHRVPPPCDL-GRCENTPGSFLCVCPAGYQAAPHGASCQDVDECTQSPGLCGRGACKNLPGSFR-CVCPAGFRGSACE-----EDVDECAQEPPPCGP-GRCDNTAGSFHCACPAGFRSRGPGAPCQDVDECARSP--PPCTYGRCENTEGSFQCVCPMGFQPNTAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEG-DFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALCGSQR-CENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQE---YGPEICGAQRCENTPGSYRCTPACDPGYQPTPGGG-CQDVDECRNRSFCGAH---AVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECETLQGVCG-AALCENVEGSFLCVC 1118 HSP 2 Score: 224.942 bits (572), Expect = 9.505e-59 Identity = 191/520 (36.73%), Postives = 253/520 (48.65%), Query Frame = 1
Query: 364 CSDINECDN--DPCSPNATCANTPGSFVCTCTNGFEG--TGLFCSDKNECLTDPCHPD-AECKNTFGSYLCKCKTGFTGDGN-TNCADINECDTDP--CSPNASCNNTKGSFICTCNAGWKGNGTVCTDRDECLDDP--CDPNADCTNVVGSYECACKVGYS--GDGFTCKDKNECTNGENNCGPNADCRNTDGSFTCICQAGLTGN--GIVCEDINECLSDPCHPNATCTNTQRSYNCQ-CKPGFDGNGTHCDDVDECLNPLMNRCSPQKFCVNTLGAFKCVCDQFYVTQS--PFVCVDKDECLDTP-CISPAICQNNIGSNYTCSCPNGYNLNPSGNKCDDIDECASPTLNNCNPTLGVCKNIPGSFECSCKSGYQGNG--ITCLDIDECATGDDNCSPRATCTNIPGSFTC--KCNDGF-SGDGTSCQDIXXXXXXXXXXXXXXX-XXXXGSYVC--ACKTGFESTGLDICTNIDECLINNGGCDRNALCTDTFGSFTCECNKGYFG--DGFTCQTI 1839
C D++EC PC+P C N+PGSF C C GF C D +EC P D C+NT GS+LC C G+ + +C D++EC P C +C N GSF C C AG++G+ D DEC +P C P C N GS+ CAC G+ G G C+D +EC C C NT+GSF C+C G N G CED++EC + P C N+ S+ C+ C G + C DVDEC + C P C NT G+F+C C Y S P C D +ECL+ C C N GS + C+C GY P G C D+DEC+ L G+C N GSFEC C G++ +CLD+DEC C N PGS+ C C+ G+ +G +C D++EC + NT GSY C AC G++ T C ++DEC N C +A+C + GSF C C++GY G DG C +
Sbjct: 585 CIDVDECRRVPPPCAP-GRCENSPGSFRCVCGPGFRAGPRAAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGASCQDVDECTQSPGLCG-RGACKNLPGSFRCVCPAGFRGSACE-EDVDECAQEPPPCGP-GRCDNTAGSFHCACPAGFRSRGPGAPCQDVDECARSPPPCT-YGRCENTEGSFQCVCPMGFQPNTAGSECEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSS-GAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGS-FACTCAPGYRPGPRGASCLDVDECSEEDLCQ----SGICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQPTPGGGCQDVDECR-NRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDV 1092 HSP 3 Score: 213.386 bits (542), Expect = 3.355e-55 Identity = 205/614 (33.39%), Postives = 271/614 (44.14%), Query Frame = 1
Query: 46 ATCNNIQGSFGCTCKDGF--TGDGFNCTNINECLSSPCD-ANATCTDTIGSYTCKCNDGYFGNGTVCNALCSSTGNDCVENATCTVDGSNTVCTCPVXXXXXXXXXXXXCSDINECDN--DPCSPNATCANTPGSFVCTCTNGFEGT--GLFCSDKNECLTDP--CHPDAECKNTFGSYLCKCKTGFTGDGNTNCADINEC--DTDPCSPNASCNNTKGSFICTCNAGWK--GNGTVCTDRDECLDDPCD-PNADCTNVVGSYECACKVGYSGD--GFTCKDKNECTNGENNCGPNADCRNTDGSFTC-ICQAGLTGNGIVCEDINECLS--DPCHPNATCTNTQRSYNCQCKPGF---DGNGTHCDDVDECLNPLMNRCSPQKFCVNTLGAFKCVCDQFYVTQSPFV-CVDKDECLDTPCISPAICQNNIGSNYTCSCPNGYNLNPSGNKCDDIDECASPTLNNCNPTLGVCKNIPGSFEC--SCKSGYQ-GNGITCLDIDECATGDDNCSPRATCTNIPGSFTC--KCNDGFSG-DGTSCQDIXXXXXXXXXXXXXXXXXXXGSYVCACKTGFE-STGLDICTNIDECLINNGGCDRNALCTDTFGSFTCEC 1797
C + + C C GF + G C +++EC P A C ++ GS+ C C G+ G E C D++EC PC C NTPGSF+C C G++ G C D +EC P C A CKN GS+ C C GF G D++EC + PC P C+NT GSF C C AG++ G G C D DEC P C N GS++C C +G+ + G C+D +EC N + P +C N+ GSF C C +G + C D++EC S PC P+ CTNT+ S+ C C PG+ G C DV+ECL + C P C+NT G+F C C Y C+D DEC + IC N GS + C CP G+ P C D+DEC C C+N PGS+ C C GY G TC D+DEC C N PGS+ C C+ G+ G CQD++EC + C N GS+ C C G+E + C +++EC G C ALC + GSF C C
Sbjct: 559 GRCISRPSGYTCACDSGFRLSPQGTRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGF------------RAGPRAAE-----------------------------CLDVDECHRVPPPCD-LGRCENTPGSFLCVCPAGYQAAPHGASCQDVDECTQSPGLCGRGA-CKNLPGSFRCVCPAGFRGSACEE--DVDECAQEPPPCGP-GRCDNTAGSFHCACPAGFRSRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAGSECEDVDECEN--HLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLE--GDFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEEDLCQSGICTNTDGS-FECICPPGHRAGPDLASCLDVDECRERGPALCGSQR--CENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQPTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECETLQGVCG-AALCENVEGSFLCVC 1118 HSP 4 Score: 181.8 bits (460), Expect = 1.320e-45 Identity = 161/461 (34.92%), Postives = 219/461 (47.51%), Query Frame = 1
Query: 1 CNDINECLKDP--CPSNATCNNIQGSFGCTCKDGFTGDGFNCTNINECLSSPCD-ANATCTDTIGSYTCKCNDGYF--GNGTVCNAL--CSSTGNDCVENATCTVDGSNTVCTCPVXXXXXXXXXXXXCSDINECDNDPCSPNATCANTPGSFVC-TCTNGFEGTGLFCSDKNECLT--DPCHPDAECKNTFGSYLCKCKTGFTGDGNT--NCADINEC-DTDPCSPNASCNNTKGSFICTCNAGWK--GNGTVCTDRDECLDDPCDPNADCTNVVGSYECACKVGYSG--DGFTCKDKNECT-NGENNCGPNADCRNTDGSFTCI--CQAGL-TGNGIVCEDINECLS---DPCHPNATCTNTQRSYNC--QCKPGFDGN-GTHCDDVDECLNPLMNRCSPQKFCVNTLGAFKCVCDQFYV-TQSPFVCVDKDECLDTPCISPAICQNNIGSNYTCSCPN 1299
C D++EC + P C C N+ GSF C C GF G +++EC P C +T GS+ C C G+ G G C + C+ + C +GS C CP+G+ + C D++EC+N P C N+PGSF C TC +G C+D +EC + PC P C NT GS+ C C G+ CAD+NEC + D C P+ C NT GSF CTC G++ G C D DEC ++ + CTN GS+EC C G+ D +C D +EC G CG + C N+ GS+ C+ C G G C+D++EC + C C NT SY C C PG+ G C DVDEC N + C C N G+F+C+CDQ Y + CVD +EC + A N+ ++ C CPN
Sbjct: 669 CQDVDECTQSPGLC-GRGACKNLPGSFRCVCPAGFRGSACE-EDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQ-CVCPMGFQPNTAGSE--CEDVDECENHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALCG-SQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYGPEICG-AQRCENTPGSYRCTPACDPGYQPTPGGGCQDVDECRN--RSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECETLQGVCGAALCENVEGSFLCVCPN 1120 HSP 5 Score: 165.622 bits (418), Expect = 1.342e-40 Identity = 144/405 (35.56%), Postives = 198/405 (48.89%), Query Frame = 1
Query: 646 ASCNNTKGSFICTCNAGWK--GNGTVCTDRDEC--LDDPCDPNADCTNVVGSYECACKVGYSG--DGFTCKDKNECTNGENNCGPNADCRNTDGSFTCICQAGLTG--NGIVCEDINECLSDP--CHPNATCTNTQRSYNCQCKPGFDGNGTHCDDVDECLNPLMNRCSPQKFCVNTLGAFKCVCDQFYVTQSPFV-CVDKDECLDTPCI-SPAICQNNIGSNYTCSCPNGYNLNPSGNKCDDIDECASPTLNNCNPTLGVCKNIPGSFEC-SCKSGYQGNGITCLDIDECATGDDNCSPRATCTNIPGSFTCKCNDGF---SGDGTSCQDIXXXXXXXXXXXXXXXXXXXGSYVCACKTGFESTGLDI-CTNIDECLINNGGCDRNALCTDTFGSFTCECNKGY 1809
C + + C C++G++ GT C D DEC + PC P C N GS+ C C G+ C D +EC C C NT GSF C+C AG +G C+D++EC P C C N S+ C C GF G+ +DVDEC C P + C NT G+F C C + ++ P C D DEC +P + C+N GS + C CP G+ N +G++C+D+DEC N+ C N PGSF+C +C SG+ + C D+DEC++G C P CTN GSF C C G+ SG C D+NECL C NT+GS+ C C G+ C ++DEC + ++ +CT+T GSF C C G+
Sbjct: 559 GRCISRPSGYTCACDSGFRLSPQGTRCIDVDECRRVPPPCAP-GRCENSPGSFRCVCGPGFRAGPRAAECLDVDECHRVPPPCD-LGRCENTPGSFLCVCPAGYQAAPHGASCQDVDECTQSPGLCG-RGACKNLPGSFRCVCPAGFRGSACE-EDVDECAQ-EPPPCGPGR-CDNTAGSFHCACPAGFRSRGPGAPCQDVDECARSPPPCTYGRCENTEGS-FQCVCPMGFQPNTAGSECEDVDECE----NHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEED--LCQSGICTNTDGSFECICPPGH 950 HSP 6 Score: 162.155 bits (409), Expect = 1.518e-39 Identity = 143/440 (32.50%), Postives = 187/440 (42.50%), Query Frame = 1
Query: 4216 CLCPGGFTGSNCETNLQPCLDIPCFPDVKCTNNLTDPTAPVAQCDPCPPGF--EGDGRKCFDIDDCKTEANDCGQ-VCVNLLGSFRCECNPGFELETNGKNCSDIDECVRQPDICDADANSVCLNTVGSYSC-VCKTGFRRDENNICSDINECAEGTSGC--QYQCSNTVGSFTCSCPTGTNLNTTDLKTCIDINECLAKP-CDSNADCENVFGSFVCQCKTGFT--GNGKQCEDLDECKIPVQIELGITLNCSQICTNNVGSYICSCNPGFTLGTDKHTCV-------PNPNLC----------------------------LIDGGNPCDENGECLFDAIKNET-------SCKCIAGYRNIDSITCEDINECSTTNG-GCSQTCTNKPGTYECSCNSGFTLDVDGKTCVDIDECLTNNGGCTPILQLCVNTPGSFRC 5379
C+CP GF GS CE ++ C P C D TA C CP GF G G C D+D+C C C N GSF+C C GF+ T G C D+DEC A C+N+ GS+ C C +G C+D++EC+ G C C+NT GSF CSC G + C D+NECL C + +C N GSF C C G+ G C D+DEC + G ICTN GS+ C C PG G D +C+ P LC D + C E G + A + E + C GY+ C+D++EC + G C N PG+++C C+ G+ DG+ CVD++EC T G C LC N GSF C
Sbjct: 696 CVCPAGFRGSACEEDVDECAQEP----PPCGPGRCDNTAGSFHCA-CPAGFRSRGPGAPCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAGSECEDVDECENH----LACPGQECVNSPGSFQCRTCPSGHHLHRGR-CTDVDECSSGAPPCGPHGHCTNTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEEDLCQSG-------ICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALCGSQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQPTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECETLQGVCG--AALCENVEGSFLC 1116 HSP 7 Score: 139.043 bits (349), Expect = 1.708e-32 Identity = 124/388 (31.96%), Postives = 159/388 (40.98%), Query Frame = 1
Query: 4378 GRKCFDIDDCKTEANDCGQ-VCVNLLGSFRCECNPGFELETNGKNCSDIDECVRQPDICDAD---------------------------------------ANSVCLNTVGSYSCVCKTGFRRDENNIC-SDINECAEGTSGC-QYQCSNTVGSFTCSCPTGTNLNTTDLKTCIDINECLAKPCD-SNADCENVFGSFVCQCKTGFTGN--GKQCEDLDECKIPVQIELGITLNC-SQICTNNVGSYIC-SCNPGFTLGTDKHTCVPNPNLCLIDGGNPCDENGECLFDAIKNETSCKCIAGYRNIDSI--TCEDINECSTTNGGCSQ-TCTNKPGTYECSCNSGFTLDVDGKTCVDIDEC----LTNNGGCTPILQLCVNTPGSFRC 5379
G +C D+D+C+ C C N GSFRC C PGF C D+DEC R P CD C N GS+ CVC GFR + C D++ECA+ C +C NT GSF C+CP G C D++EC P + CEN GSF C C GF N G +CED+DEC+ L C Q C N+ GS+ C +C G L + T V G PC +G C + C C GYR C D+NEC + C N G++ C+C G+ G +C+D+DEC L +G +C NT GSF C
Sbjct: 582 GTRCIDVDECRRVPPPCAPGRCENSPGSFRCVCGPGFRAGPRAAECLDVDECHRVPPPCDLGRCENTPGSFLCVCPAGYQAAPHGASCQDVDECTQSPGLCGRGACKNLPGSFRCVCPAGFR---GSACEEDVDECAQEPPPCGPGRCDNTAGSFHCACPAGFRSRGPG-APCQDVDECARSPPPCTYGRCENTEGSFQCVCPMGFQPNTAGSECEDVDECE--------NHLACPGQECVNSPGSFQCRTCPSGHHLHRGRCTDVDE----CSSGAPPCGPHGHCT--NTEGSFRCSCAPGYRAPSGRPGPCADVNECLEGDFCFPHGECLNTDGSFACTCAPGYRPGPRGASCLDVDECSEEDLCQSG-------ICTNTDGSFEC 944 HSP 8 Score: 104.76 bits (260), Expect = 4.681e-22 Identity = 86/246 (34.96%), Postives = 119/246 (48.37%), Query Frame = 1
Query: 4285 CFPDVKCTNNLTDPTAPVAQCDPCPPGFEG--DGRKCFDIDDCKTEANDCGQVCVNLLGSFRCECNPGFELETNGKNCSDIDECV-RQPDICDADANSVCLNTVGSYSCV--CKTGFRRDENNICSDINECAE-GTSGCQYQ-CSNTVGSFTCSCPTGTNLNTTDLKTCIDINECLAKP-CDSNADCENVFGSFVCQCKTGFTG--NGKQCEDLDECKIPVQIELGITLNCSQICTNNVGSYICSC 4992
CFP +C N TD + C PG+ G C D+D+C E +C N GSF C C PG + +C D+DEC R P +C + C N+ GSY CV C G+ C D++EC E G C Q C NT GS+ C+ T C D++EC + C ++A C+N+ GSF C C G+ G +G+ C D++EC+ +Q G L C N GS++C C
Sbjct: 888 CFPHGECLN--TDGSFACT----CAPGYRPGPRGASCLDVDECSEEDLCQSGICTNTDGSFECICPPGHRAGPDLASCLDVDECRERGPALC---GSQRCENSPGSYRCVRDCDPGYHAGPEGTCDDVDECQEYGPEICGAQRCENTPGSYRCTPACDPGYQPTPGGGCQDVDECRNRSFCGAHAVCQNLPGSFQCLCDQGYEGARDGRHCVDVNECET-LQGVCGAAL-----CENVEGSFLCVC 1118 The following BLAST results are available for this feature:
BLAST of TCONS_00012969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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