TCONS_00012937 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012937
Unique NameTCONS_00012937
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012937 ID=TCONS_00012937|Name=TCONS_00012937|organism=Clytia hemisphaerica|type=transcript|length=491bp
ttggattattttataaaatatggaaaattacAATAACTgtgaattcaaaa
aaaatagtaTAATTTTACTCTACAAACAACGGGCACACCCTCCAAAGATA
CGAAAATTGGCTGGCTTTTAAAAGattacaatttttcaaaacagttGTCC
TATATTACAGCAATACTTTGCACATTTAGTATGAGCTCGGAGGCGAGTCA
TTCTGTCAGGATCTTGGCAATTTCTTTGAGAACAATCTAATGCACGGTCA
GTAAGATTGGAGCATTTTTCTTGTTCGCTCCCACGACATTTCCCACAAGA
TCGAATGCAAACATGACCGTATTTTGAACAATGTTGTGATGGATTAAATG
TTTCTGTCATGAAACAGAATGATGCTTTATCGCCACAGCTTGATGTCAAT
AATTCTGGAGTTGTTCGTGGTGGTTTTGTTGGGTTGGTTCTCTTTGGTTT
TGTTTTGGAGACTGTTGTAGTTGAAGCTTTTGTTGTTGGTA
Run BLAST on NCBI

protein sequence of TCONS_00012937-protein

>TCONS_00012937-protein ID=TCONS_00012937-protein|Name=TCONS_00012937-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
PTTKASTTTVSKTKPKRTNPTKPPRTTPELLTSSCGDKASFCFMTETFNP
SQHCSKYGHVCIRSCGKCRGSEQEKCSNLTDRALDCSQRNCQDPDRMTRL
RAHTKCAKYCCNIGQLF
Run BLAST on NCBI

transcript from alignment at sc0000157:441413..441903

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012937 ID=TCONS_00012937|Name=TCONS_00012937|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0000157:441413..441903 (Clytia hemisphaerica)
TACCAACAACAAAAGCTTCAACTACAACAGTCTCCAAAACAAAACCAAAG
AGAACCAACCCAACAAAACCACCACGAACAACTCCAGAATTATTGACATC
AAGCTGTGGCGATAAAGCATCATTCTGTTTCATGACAGAAACATTTAATC
CATCACAACATTGTTCAAAATACGGTCATGTTTGCATTCGATCTTGTGGG
AAATGTCGTGGGAGCGAACAAGAAAAATGCTCCAATCTTACTGACCGTGC
ATTAGATTGTTCTCAAAGAAATTGCCAAGATCCTGACAGAATGACTCGCC
TCCGAGCTCATACTAAATGTGCAAAGTATTGCTGTAATATAGGACaactg
ttttgaaaaattgtaatCTTTTAAAAGCCAGCCAATTTTCGTATCTTTGG
AGGGTGTGCCCGTTGTTTGTAGAGTAAAATTAtactattttttttgaatt
cacAGTTATTgtaattttccatattttataaaataatccaa

Coding sequence (CDS) from alignment at sc0000157:441413..441903

>TCONS_00012937 ID=TCONS_00012937|Name=TCONS_00012937|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000157:441413..441903 (Clytia hemisphaerica)
CCAACAACAAAAGCTTCAACTACAACAGTCTCCAAAACAAAACCAAAGAG
AACCAACCCAACAAAACCACCACGAACAACTCCAGAATTATTGACATCAA
GCTGTGGCGATAAAGCATCATTCTGTTTCATGACAGAAACATTTAATCCA
TCACAACATTGTTCAAAATACGGTCATGTTTGCATTCGATCTTGTGGGAA
ATGTCGTGGGAGCGAACAAGAAAAATGCTCCAATCTTACTGACCGTGCAT
TAGATTGTTCTCAAAGAAATTGCCAAGATCCTGACAGAATGACTCGCCTC
CGAGCTCATACTAAATGTGCAAAGTATTGCTGTAATATAGGACaactgtt
ttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007266XLOC_007266Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012937-proteinTCONS_00012937-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012937-exon-sc0000157-1491911889:441413..441903TCONS_00012937-exon-sc0000157-1491911889:441413..441903Clytia hemisphaericaexon
TCONS_00012937-exon-sc0000157-1510915933:441413..441903TCONS_00012937-exon-sc0000157-1510915933:441413..441903Clytia hemisphaericaexon
TCONS_00012937-exon-sc0000157-1575043694:441413..441903TCONS_00012937-exon-sc0000157-1575043694:441413..441903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000157supercontigsc0000157:441413..441903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.489787	0.74614	0	0.151505	0	0	0	0	0.106016	0.262635	0	0.0837872	0.167341	0	0	0.383318	0	0.290404	0.133736	0.839672	0	0	0.886298	0.568757	0	0.420614	5.82968	1.72351	0.178241	0.522723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012937 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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